Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02790 and ABID97_RS02795 are separated by 103 nucleotides ABID97_RS02795 and ABID97_RS02800 are separated by 6 nucleotides ABID97_RS02800 and ABID97_RS02805 overlap by 4 nucleotides
ABID97_RS02790: ABID97_RS02790 - penicillin-binding protein 1A, at 569,779 to 572,184
_RS02790
ABID97_RS02795: ABID97_RS02795 - hypothetical protein, at 572,288 to 572,893
_RS02795
ABID97_RS02800: ABID97_RS02800 - two-component system sensor histidine kinase CreC, at 572,900 to 574,345
_RS02800
ABID97_RS02805: ABID97_RS02805 - two-component system response regulator CreB, at 574,342 to 575,127
_RS02805
Position (kb) 572
573
574
575 Strain fitness (log2 ratio) -1
0
1 at 571.948 kb on + strand at 571.949 kb on - strand at 572.029 kb on + strand at 572.029 kb on + strand at 572.182 kb on + strand at 572.241 kb on + strand at 572.241 kb on + strand at 572.241 kb on + strand at 572.242 kb on - strand at 572.330 kb on + strand at 572.330 kb on + strand at 572.331 kb on - strand at 572.393 kb on + strand, within ABID97_RS02795 at 572.393 kb on + strand, within ABID97_RS02795 at 572.393 kb on + strand, within ABID97_RS02795 at 572.393 kb on + strand, within ABID97_RS02795 at 572.394 kb on - strand, within ABID97_RS02795 at 572.394 kb on - strand, within ABID97_RS02795 at 572.432 kb on + strand, within ABID97_RS02795 at 572.600 kb on + strand, within ABID97_RS02795 at 572.825 kb on + strand, within ABID97_RS02795 at 572.871 kb on - strand at 572.871 kb on - strand at 572.871 kb on - strand at 573.066 kb on + strand, within ABID97_RS02800 at 573.097 kb on - strand, within ABID97_RS02800 at 573.097 kb on - strand, within ABID97_RS02800 at 573.097 kb on - strand, within ABID97_RS02800 at 573.571 kb on - strand, within ABID97_RS02800 at 573.582 kb on + strand, within ABID97_RS02800 at 573.582 kb on + strand, within ABID97_RS02800 at 573.582 kb on + strand, within ABID97_RS02800 at 573.582 kb on + strand, within ABID97_RS02800 at 573.583 kb on - strand, within ABID97_RS02800 at 573.583 kb on - strand, within ABID97_RS02800 at 573.583 kb on - strand, within ABID97_RS02800 at 573.583 kb on - strand, within ABID97_RS02800 at 573.699 kb on + strand, within ABID97_RS02800 at 573.900 kb on + strand, within ABID97_RS02800 at 573.900 kb on + strand, within ABID97_RS02800 at 573.900 kb on + strand, within ABID97_RS02800 at 573.900 kb on + strand, within ABID97_RS02800 at 573.900 kb on + strand, within ABID97_RS02800 at 573.900 kb on + strand, within ABID97_RS02800 at 573.901 kb on - strand, within ABID97_RS02800 at 573.901 kb on - strand, within ABID97_RS02800 at 573.901 kb on - strand, within ABID97_RS02800 at 573.901 kb on - strand, within ABID97_RS02800 at 573.954 kb on + strand, within ABID97_RS02800 at 573.955 kb on - strand, within ABID97_RS02800 at 573.996 kb on + strand, within ABID97_RS02800 at 573.997 kb on - strand, within ABID97_RS02800 at 574.059 kb on + strand, within ABID97_RS02800 at 574.060 kb on - strand, within ABID97_RS02800 at 574.060 kb on - strand, within ABID97_RS02800 at 574.060 kb on - strand, within ABID97_RS02800 at 574.060 kb on - strand, within ABID97_RS02800 at 574.060 kb on - strand, within ABID97_RS02800 at 574.095 kb on + strand, within ABID97_RS02800 at 574.096 kb on - strand, within ABID97_RS02800 at 574.096 kb on - strand, within ABID97_RS02800 at 574.096 kb on - strand, within ABID97_RS02800 at 574.096 kb on - strand, within ABID97_RS02800 at 574.122 kb on + strand, within ABID97_RS02800 at 574.122 kb on + strand, within ABID97_RS02800 at 574.123 kb on - strand, within ABID97_RS02800 at 574.302 kb on + strand at 574.303 kb on - strand at 574.380 kb on - strand at 574.572 kb on - strand, within ABID97_RS02805 at 574.604 kb on + strand, within ABID97_RS02805 at 574.604 kb on + strand, within ABID97_RS02805 at 574.604 kb on + strand, within ABID97_RS02805 at 574.808 kb on + strand, within ABID97_RS02805 at 574.808 kb on + strand, within ABID97_RS02805 at 574.808 kb on + strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.809 kb on - strand, within ABID97_RS02805 at 574.882 kb on + strand, within ABID97_RS02805 at 575.063 kb on + strand at 575.063 kb on + strand at 575.063 kb on + strand at 575.064 kb on - strand at 575.064 kb on - strand at 575.064 kb on - strand at 575.139 kb on - strand at 575.240 kb on + strand at 575.241 kb on - strand at 575.241 kb on - strand at 575.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 571,948 + -0.3 571,949 - -1.0 572,029 + -0.1 572,029 + +1.3 572,182 + +0.5 572,241 + -0.0 572,241 + -0.0 572,241 + -0.3 572,242 - -0.2 572,330 + -0.1 572,330 + +1.0 572,331 - -0.2 572,393 + ABID97_RS02795 0.17 -0.7 572,393 + ABID97_RS02795 0.17 -0.5 572,393 + ABID97_RS02795 0.17 +0.2 572,393 + ABID97_RS02795 0.17 -0.5 572,394 - ABID97_RS02795 0.17 +0.0 572,394 - ABID97_RS02795 0.17 -0.0 572,432 + ABID97_RS02795 0.24 -0.8 572,600 + ABID97_RS02795 0.51 -0.6 572,825 + ABID97_RS02795 0.89 -0.3 572,871 - -0.6 572,871 - -1.6 572,871 - -1.3 573,066 + ABID97_RS02800 0.11 +1.1 573,097 - ABID97_RS02800 0.14 +0.2 573,097 - ABID97_RS02800 0.14 +1.2 573,097 - ABID97_RS02800 0.14 +1.7 573,571 - ABID97_RS02800 0.46 -1.5 573,582 + ABID97_RS02800 0.47 -1.5 573,582 + ABID97_RS02800 0.47 +0.0 573,582 + ABID97_RS02800 0.47 -1.7 573,582 + ABID97_RS02800 0.47 -0.8 573,583 - ABID97_RS02800 0.47 +0.4 573,583 - ABID97_RS02800 0.47 +0.3 573,583 - ABID97_RS02800 0.47 +0.0 573,583 - ABID97_RS02800 0.47 +0.1 573,699 + ABID97_RS02800 0.55 +0.1 573,900 + ABID97_RS02800 0.69 -0.4 573,900 + ABID97_RS02800 0.69 +0.2 573,900 + ABID97_RS02800 0.69 +0.3 573,900 + ABID97_RS02800 0.69 -0.1 573,900 + ABID97_RS02800 0.69 -1.2 573,900 + ABID97_RS02800 0.69 +0.2 573,901 - ABID97_RS02800 0.69 -0.5 573,901 - ABID97_RS02800 0.69 +0.4 573,901 - ABID97_RS02800 0.69 -0.3 573,901 - ABID97_RS02800 0.69 +0.7 573,954 + ABID97_RS02800 0.73 -1.1 573,955 - ABID97_RS02800 0.73 +0.6 573,996 + ABID97_RS02800 0.76 +1.0 573,997 - ABID97_RS02800 0.76 +1.0 574,059 + ABID97_RS02800 0.80 -0.6 574,060 - ABID97_RS02800 0.80 +0.0 574,060 - ABID97_RS02800 0.80 +0.1 574,060 - ABID97_RS02800 0.80 +1.1 574,060 - ABID97_RS02800 0.80 +1.1 574,060 - ABID97_RS02800 0.80 -0.1 574,095 + ABID97_RS02800 0.83 -0.6 574,096 - ABID97_RS02800 0.83 +0.9 574,096 - ABID97_RS02800 0.83 -0.2 574,096 - ABID97_RS02800 0.83 +0.2 574,096 - ABID97_RS02800 0.83 -0.9 574,122 + ABID97_RS02800 0.85 -0.1 574,122 + ABID97_RS02800 0.85 -0.8 574,123 - ABID97_RS02800 0.85 +0.1 574,302 + -1.6 574,303 - -0.2 574,380 - +1.1 574,572 - ABID97_RS02805 0.29 -0.0 574,604 + ABID97_RS02805 0.33 -0.0 574,604 + ABID97_RS02805 0.33 -0.3 574,604 + ABID97_RS02805 0.33 -0.4 574,808 + ABID97_RS02805 0.59 -0.2 574,808 + ABID97_RS02805 0.59 +0.3 574,808 + ABID97_RS02805 0.59 -1.2 574,809 - ABID97_RS02805 0.59 +0.4 574,809 - ABID97_RS02805 0.59 +1.3 574,809 - ABID97_RS02805 0.59 +0.1 574,809 - ABID97_RS02805 0.59 +0.7 574,809 - ABID97_RS02805 0.59 -0.7 574,882 + ABID97_RS02805 0.69 -1.4 575,063 + +0.1 575,063 + +1.1 575,063 + +0.4 575,064 - +1.4 575,064 - +0.2 575,064 - +0.1 575,139 - +0.8 575,240 + -1.3 575,241 - -0.8 575,241 - +0.1 575,241 - +0.5
Or see this region's nucleotide sequence