Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02760 and ABID97_RS02765 are separated by 7 nucleotides ABID97_RS02765 and ABID97_RS02770 overlap by 20 nucleotides ABID97_RS02770 and ABID97_RS02775 are separated by 20 nucleotides
ABID97_RS02760: ABID97_RS02760 - biosynthetic peptidoglycan transglycosylase, at 561,997 to 563,265
_RS02760
ABID97_RS02765: ABID97_RS02765 - hypothetical protein, at 563,273 to 563,842
_RS02765
ABID97_RS02770: ABID97_RS02770 - exosortase Q, at 563,823 to 564,752
_RS02770
ABID97_RS02775: ABID97_RS02775 - VIT and VWA domain-containing protein, at 564,773 to 566,848
_RS02775
Position (kb) 563
564 Strain fitness (log2 ratio) -1
0
1 at 562.286 kb on + strand, within ABID97_RS02760 at 562.337 kb on + strand, within ABID97_RS02760 at 562.337 kb on + strand, within ABID97_RS02760 at 562.338 kb on - strand, within ABID97_RS02760 at 562.338 kb on - strand, within ABID97_RS02760 at 563.238 kb on - strand at 563.340 kb on + strand, within ABID97_RS02765 at 563.340 kb on + strand, within ABID97_RS02765 at 563.340 kb on + strand, within ABID97_RS02765 at 563.341 kb on - strand, within ABID97_RS02765 at 564.136 kb on + strand, within ABID97_RS02770 at 564.286 kb on + strand, within ABID97_RS02770 at 564.485 kb on + strand, within ABID97_RS02770
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 562,286 + ABID97_RS02760 0.23 +1.5 562,337 + ABID97_RS02760 0.27 -1.2 562,337 + ABID97_RS02760 0.27 -1.3 562,338 - ABID97_RS02760 0.27 -1.1 562,338 - ABID97_RS02760 0.27 +0.4 563,238 - +0.1 563,340 + ABID97_RS02765 0.12 +1.1 563,340 + ABID97_RS02765 0.12 -1.5 563,340 + ABID97_RS02765 0.12 -0.6 563,341 - ABID97_RS02765 0.12 -0.8 564,136 + ABID97_RS02770 0.34 -1.7 564,286 + ABID97_RS02770 0.50 -0.1 564,485 + ABID97_RS02770 0.71 -0.9
Or see this region's nucleotide sequence