Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02590 and ABID97_RS02595 are separated by 34 nucleotides ABID97_RS02595 and ABID97_RS02600 overlap by 4 nucleotides ABID97_RS02600 and ABID97_RS02605 are separated by 127 nucleotides
ABID97_RS02590: ABID97_RS02590 - YigZ family protein, at 530,084 to 530,674
_RS02590
ABID97_RS02595: ABID97_RS02595 - methionine biosynthesis protein MetW, at 530,709 to 531,296
_RS02595
ABID97_RS02600: ABID97_RS02600 - homoserine O-acetyltransferase, at 531,293 to 532,471
_RS02600
ABID97_RS02605: ABID97_RS02605 - TMEM165/GDT1 family protein, at 532,599 to 533,162
_RS02605
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.346 kb on + strand, within ABID97_RS02590 at 530.347 kb on - strand, within ABID97_RS02590 at 530.391 kb on + strand, within ABID97_RS02590 at 531.343 kb on - strand at 531.363 kb on + strand at 531.363 kb on + strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.420 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.610 kb on - strand, within ABID97_RS02600 at 531.610 kb on - strand, within ABID97_RS02600 at 531.610 kb on - strand, within ABID97_RS02600 at 531.627 kb on + strand, within ABID97_RS02600 at 531.628 kb on - strand, within ABID97_RS02600 at 531.628 kb on - strand, within ABID97_RS02600 at 531.660 kb on + strand, within ABID97_RS02600 at 531.783 kb on + strand, within ABID97_RS02600 at 531.784 kb on - strand, within ABID97_RS02600 at 531.784 kb on - strand, within ABID97_RS02600 at 531.784 kb on - strand, within ABID97_RS02600 at 531.784 kb on - strand, within ABID97_RS02600 at 531.847 kb on - strand, within ABID97_RS02600 at 531.847 kb on - strand, within ABID97_RS02600 at 531.975 kb on + strand, within ABID97_RS02600 at 532.120 kb on - strand, within ABID97_RS02600 at 532.120 kb on - strand, within ABID97_RS02600 at 532.120 kb on - strand, within ABID97_RS02600 at 532.278 kb on + strand, within ABID97_RS02600 at 532.278 kb on + strand, within ABID97_RS02600 at 532.278 kb on + strand, within ABID97_RS02600 at 532.278 kb on + strand, within ABID97_RS02600 at 532.279 kb on - strand, within ABID97_RS02600 at 532.279 kb on - strand, within ABID97_RS02600 at 532.279 kb on - strand, within ABID97_RS02600 at 532.279 kb on - strand, within ABID97_RS02600 at 532.359 kb on + strand at 532.359 kb on + strand at 532.360 kb on - strand at 532.381 kb on - strand at 532.381 kb on - strand at 532.381 kb on - strand at 532.530 kb on + strand at 532.530 kb on + strand at 532.540 kb on + strand at 532.540 kb on + strand at 532.541 kb on - strand at 532.541 kb on - strand at 532.542 kb on + strand at 532.542 kb on + strand at 532.542 kb on + strand at 532.543 kb on - strand at 532.543 kb on - strand at 532.561 kb on - strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.583 kb on + strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.584 kb on - strand at 532.585 kb on + strand at 532.585 kb on + strand at 532.585 kb on + strand at 532.585 kb on + strand at 532.586 kb on - strand at 532.586 kb on - strand at 532.600 kb on + strand at 532.762 kb on + strand, within ABID97_RS02605 at 532.762 kb on + strand, within ABID97_RS02605 at 532.763 kb on - strand, within ABID97_RS02605 at 532.763 kb on - strand, within ABID97_RS02605 at 532.763 kb on - strand, within ABID97_RS02605 at 532.763 kb on - strand, within ABID97_RS02605 at 532.763 kb on - strand, within ABID97_RS02605 at 532.763 kb on - strand, within ABID97_RS02605 at 532.864 kb on + strand, within ABID97_RS02605 at 532.864 kb on + strand, within ABID97_RS02605 at 532.865 kb on - strand, within ABID97_RS02605 at 532.865 kb on - strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.990 kb on + strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 532.991 kb on - strand, within ABID97_RS02605 at 533.221 kb on + strand at 533.336 kb on + strand at 533.336 kb on + strand at 533.337 kb on - strand at 533.361 kb on + strand at 533.361 kb on + strand at 533.361 kb on + strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.362 kb on - strand at 533.432 kb on - strand at 533.466 kb on + strand at 533.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 530,346 + ABID97_RS02590 0.44 -0.1 530,347 - ABID97_RS02590 0.45 -0.1 530,391 + ABID97_RS02590 0.52 +0.6 531,343 - -1.2 531,363 + -0.9 531,363 + +0.9 531,364 - +1.6 531,364 - +0.3 531,364 - +1.1 531,364 - -1.9 531,364 - -1.0 531,364 - +0.0 531,420 + ABID97_RS02600 0.11 +0.6 531,609 + ABID97_RS02600 0.27 -0.1 531,609 + ABID97_RS02600 0.27 -0.5 531,609 + ABID97_RS02600 0.27 +0.0 531,609 + ABID97_RS02600 0.27 -0.2 531,609 + ABID97_RS02600 0.27 +0.4 531,610 - ABID97_RS02600 0.27 -1.7 531,610 - ABID97_RS02600 0.27 -0.1 531,610 - ABID97_RS02600 0.27 -0.9 531,627 + ABID97_RS02600 0.28 +0.3 531,628 - ABID97_RS02600 0.28 -1.6 531,628 - ABID97_RS02600 0.28 -0.2 531,660 + ABID97_RS02600 0.31 +1.0 531,783 + ABID97_RS02600 0.42 -1.9 531,784 - ABID97_RS02600 0.42 +0.5 531,784 - ABID97_RS02600 0.42 +0.7 531,784 - ABID97_RS02600 0.42 -0.1 531,784 - ABID97_RS02600 0.42 +1.0 531,847 - ABID97_RS02600 0.47 -1.4 531,847 - ABID97_RS02600 0.47 -1.3 531,975 + ABID97_RS02600 0.58 -1.2 532,120 - ABID97_RS02600 0.70 +0.7 532,120 - ABID97_RS02600 0.70 +0.6 532,120 - ABID97_RS02600 0.70 -0.4 532,278 + ABID97_RS02600 0.84 -0.8 532,278 + ABID97_RS02600 0.84 -1.0 532,278 + ABID97_RS02600 0.84 +0.7 532,278 + ABID97_RS02600 0.84 -0.7 532,279 - ABID97_RS02600 0.84 -0.4 532,279 - ABID97_RS02600 0.84 -1.5 532,279 - ABID97_RS02600 0.84 -1.7 532,279 - ABID97_RS02600 0.84 -0.4 532,359 + +0.1 532,359 + -0.9 532,360 - -1.0 532,381 - -0.3 532,381 - -0.3 532,381 - -0.2 532,530 + -0.4 532,530 + +0.7 532,540 + +0.5 532,540 + +0.0 532,541 - +0.1 532,541 - +0.3 532,542 + -0.8 532,542 + -1.6 532,542 + -0.4 532,543 - +0.7 532,543 - +1.8 532,561 - -0.1 532,583 + +0.9 532,583 + +1.0 532,583 + +0.6 532,583 + -0.2 532,583 + +1.9 532,583 + +1.9 532,583 + +0.7 532,583 + +0.7 532,583 + +0.1 532,583 + +1.9 532,584 - +0.4 532,584 - +0.6 532,584 - +0.3 532,584 - +0.2 532,584 - +0.5 532,584 - +0.2 532,584 - +0.0 532,584 - +2.0 532,584 - +1.1 532,584 - +0.3 532,584 - +0.4 532,584 - +0.5 532,584 - +0.3 532,584 - +0.6 532,585 + +0.5 532,585 + +0.4 532,585 + +0.8 532,585 + -0.5 532,586 - +0.2 532,586 - +0.4 532,600 + +1.2 532,762 + ABID97_RS02605 0.29 +0.5 532,762 + ABID97_RS02605 0.29 +0.8 532,763 - ABID97_RS02605 0.29 +0.6 532,763 - ABID97_RS02605 0.29 +1.0 532,763 - ABID97_RS02605 0.29 +1.5 532,763 - ABID97_RS02605 0.29 +1.2 532,763 - ABID97_RS02605 0.29 -0.4 532,763 - ABID97_RS02605 0.29 +1.8 532,864 + ABID97_RS02605 0.47 +0.6 532,864 + ABID97_RS02605 0.47 +1.4 532,865 - ABID97_RS02605 0.47 +1.2 532,865 - ABID97_RS02605 0.47 +1.0 532,990 + ABID97_RS02605 0.69 +1.3 532,990 + ABID97_RS02605 0.69 +0.8 532,990 + ABID97_RS02605 0.69 +0.8 532,990 + ABID97_RS02605 0.69 +0.6 532,990 + ABID97_RS02605 0.69 +1.1 532,990 + ABID97_RS02605 0.69 +1.5 532,990 + ABID97_RS02605 0.69 +0.9 532,990 + ABID97_RS02605 0.69 +0.9 532,990 + ABID97_RS02605 0.69 +0.7 532,990 + ABID97_RS02605 0.69 +0.2 532,990 + ABID97_RS02605 0.69 -0.1 532,990 + ABID97_RS02605 0.69 +0.7 532,990 + ABID97_RS02605 0.69 +1.2 532,990 + ABID97_RS02605 0.69 +0.8 532,990 + ABID97_RS02605 0.69 -0.5 532,991 - ABID97_RS02605 0.70 -0.4 532,991 - ABID97_RS02605 0.70 +0.9 532,991 - ABID97_RS02605 0.70 +0.3 532,991 - ABID97_RS02605 0.70 +0.9 532,991 - ABID97_RS02605 0.70 +0.9 532,991 - ABID97_RS02605 0.70 +0.9 532,991 - ABID97_RS02605 0.70 +0.3 533,221 + -0.7 533,336 + +0.5 533,336 + +0.3 533,337 - +0.5 533,361 + +0.4 533,361 + -0.2 533,361 + -1.3 533,362 - +0.8 533,362 - -0.3 533,362 - +0.2 533,362 - +0.3 533,362 - +1.8 533,362 - +0.5 533,362 - +0.4 533,362 - +0.6 533,432 - +2.0 533,466 + +1.1 533,467 - +1.7
Or see this region's nucleotide sequence