Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02490

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS02485 and ABID97_RS02490 are separated by 7 nucleotidesABID97_RS02490 and ABID97_RS02495 are separated by 14 nucleotidesABID97_RS02495 and ABID97_RS02500 are separated by 59 nucleotides ABID97_RS02485: ABID97_RS02485 - FAD-dependent oxidoreductase, at 505,261 to 506,874 _RS02485 ABID97_RS02490: ABID97_RS02490 - polyamine aminopropyltransferase, at 506,882 to 508,423 _RS02490 ABID97_RS02495: ABID97_RS02495 - DUF350 domain-containing protein, at 508,438 to 508,656 _RS02495 ABID97_RS02500: ABID97_RS02500 - DUF4178 domain-containing protein, at 508,716 to 510,194 _RS02500 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -1 0 1at 506.144 kb on + strand, within ABID97_RS02485at 506.163 kb on - strand, within ABID97_RS02485at 506.172 kb on - strand, within ABID97_RS02485at 506.444 kb on + strand, within ABID97_RS02485at 506.524 kb on + strand, within ABID97_RS02485at 506.735 kb on - strandat 506.884 kb on - strandat 506.916 kb on + strandat 506.916 kb on + strandat 506.917 kb on - strandat 506.917 kb on - strandat 506.917 kb on - strandat 506.917 kb on - strandat 506.917 kb on - strandat 506.917 kb on - strandat 506.917 kb on - strandat 506.917 kb on - strandat 507.081 kb on + strand, within ABID97_RS02490at 507.081 kb on + strand, within ABID97_RS02490at 507.081 kb on + strand, within ABID97_RS02490at 507.081 kb on + strand, within ABID97_RS02490at 507.082 kb on - strand, within ABID97_RS02490at 507.082 kb on - strand, within ABID97_RS02490at 507.117 kb on + strand, within ABID97_RS02490at 507.213 kb on + strand, within ABID97_RS02490at 507.214 kb on - strand, within ABID97_RS02490at 507.214 kb on - strand, within ABID97_RS02490at 507.250 kb on - strand, within ABID97_RS02490at 507.264 kb on + strand, within ABID97_RS02490at 507.264 kb on + strand, within ABID97_RS02490at 507.264 kb on + strand, within ABID97_RS02490at 507.265 kb on - strand, within ABID97_RS02490at 507.489 kb on + strand, within ABID97_RS02490at 507.490 kb on - strand, within ABID97_RS02490at 507.490 kb on - strand, within ABID97_RS02490at 508.114 kb on - strand, within ABID97_RS02490at 508.114 kb on - strand, within ABID97_RS02490at 508.114 kb on - strand, within ABID97_RS02490at 508.251 kb on + strand, within ABID97_RS02490at 508.251 kb on + strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.252 kb on - strand, within ABID97_RS02490at 508.299 kb on + strandat 508.300 kb on - strandat 508.300 kb on - strandat 508.329 kb on + strandat 508.330 kb on - strandat 508.544 kb on + strand, within ABID97_RS02495at 508.545 kb on - strand, within ABID97_RS02495at 508.545 kb on - strand, within ABID97_RS02495at 508.607 kb on + strand, within ABID97_RS02495at 508.607 kb on + strand, within ABID97_RS02495at 508.607 kb on + strand, within ABID97_RS02495at 508.608 kb on - strand, within ABID97_RS02495at 508.608 kb on - strand, within ABID97_RS02495at 508.608 kb on - strand, within ABID97_RS02495at 508.608 kb on - strand, within ABID97_RS02495at 508.608 kb on - strand, within ABID97_RS02495at 508.673 kb on - strandat 508.673 kb on - strandat 508.673 kb on - strandat 508.682 kb on - strandat 508.682 kb on - strandat 508.684 kb on + strandat 508.684 kb on + strandat 508.684 kb on + strandat 508.684 kb on + strandat 508.684 kb on + strandat 508.684 kb on + strandat 508.684 kb on + strandat 508.685 kb on - strandat 508.685 kb on - strandat 508.750 kb on + strandat 508.751 kb on - strandat 509.068 kb on + strand, within ABID97_RS02500at 509.069 kb on - strand, within ABID97_RS02500at 509.069 kb on - strand, within ABID97_RS02500at 509.069 kb on - strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.086 kb on + strand, within ABID97_RS02500at 509.087 kb on - strand, within ABID97_RS02500at 509.087 kb on - strand, within ABID97_RS02500at 509.087 kb on - strand, within ABID97_RS02500at 509.104 kb on + strand, within ABID97_RS02500at 509.104 kb on + strand, within ABID97_RS02500at 509.105 kb on - strand, within ABID97_RS02500at 509.110 kb on + strand, within ABID97_RS02500at 509.110 kb on + strand, within ABID97_RS02500at 509.111 kb on - strand, within ABID97_RS02500at 509.122 kb on + strand, within ABID97_RS02500at 509.122 kb on + strand, within ABID97_RS02500at 509.123 kb on - strand, within ABID97_RS02500at 509.123 kb on - strand, within ABID97_RS02500at 509.123 kb on - strand, within ABID97_RS02500at 509.123 kb on - strand, within ABID97_RS02500at 509.137 kb on + strand, within ABID97_RS02500at 509.137 kb on + strand, within ABID97_RS02500at 509.137 kb on + strand, within ABID97_RS02500at 509.137 kb on + strand, within ABID97_RS02500at 509.137 kb on + strand, within ABID97_RS02500at 509.138 kb on - strand, within ABID97_RS02500at 509.138 kb on - strand, within ABID97_RS02500at 509.138 kb on - strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.248 kb on + strand, within ABID97_RS02500at 509.249 kb on - strand, within ABID97_RS02500at 509.257 kb on + strand, within ABID97_RS02500at 509.257 kb on + strand, within ABID97_RS02500at 509.258 kb on - strand, within ABID97_RS02500at 509.258 kb on - strand, within ABID97_RS02500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
506,144 + ABID97_RS02485 0.55 +0.2
506,163 - ABID97_RS02485 0.56 -0.3
506,172 - ABID97_RS02485 0.56 -0.3
506,444 + ABID97_RS02485 0.73 +0.2
506,524 + ABID97_RS02485 0.78 -0.9
506,735 - -0.1
506,884 - +0.2
506,916 + +0.4
506,916 + -0.7
506,917 - +0.0
506,917 - +0.1
506,917 - -0.8
506,917 - -0.1
506,917 - -0.7
506,917 - -0.2
506,917 - -0.1
506,917 - -0.1
507,081 + ABID97_RS02490 0.13 -0.6
507,081 + ABID97_RS02490 0.13 -0.2
507,081 + ABID97_RS02490 0.13 -0.9
507,081 + ABID97_RS02490 0.13 -0.6
507,082 - ABID97_RS02490 0.13 -0.1
507,082 - ABID97_RS02490 0.13 +0.6
507,117 + ABID97_RS02490 0.15 -1.5
507,213 + ABID97_RS02490 0.21 -0.1
507,214 - ABID97_RS02490 0.22 -0.2
507,214 - ABID97_RS02490 0.22 +0.9
507,250 - ABID97_RS02490 0.24 -0.8
507,264 + ABID97_RS02490 0.25 -0.5
507,264 + ABID97_RS02490 0.25 -0.1
507,264 + ABID97_RS02490 0.25 +0.6
507,265 - ABID97_RS02490 0.25 +0.1
507,489 + ABID97_RS02490 0.39 -1.4
507,490 - ABID97_RS02490 0.39 -0.0
507,490 - ABID97_RS02490 0.39 -0.6
508,114 - ABID97_RS02490 0.80 +0.1
508,114 - ABID97_RS02490 0.80 -0.6
508,114 - ABID97_RS02490 0.80 -0.2
508,251 + ABID97_RS02490 0.89 -0.5
508,251 + ABID97_RS02490 0.89 -0.1
508,252 - ABID97_RS02490 0.89 +0.1
508,252 - ABID97_RS02490 0.89 -0.1
508,252 - ABID97_RS02490 0.89 -0.3
508,252 - ABID97_RS02490 0.89 -0.1
508,252 - ABID97_RS02490 0.89 -0.4
508,252 - ABID97_RS02490 0.89 -0.1
508,252 - ABID97_RS02490 0.89 -0.2
508,299 + -0.4
508,300 - -0.2
508,300 - +0.4
508,329 + +0.4
508,330 - -0.4
508,544 + ABID97_RS02495 0.48 -1.0
508,545 - ABID97_RS02495 0.49 -0.4
508,545 - ABID97_RS02495 0.49 -0.2
508,607 + ABID97_RS02495 0.77 -0.1
508,607 + ABID97_RS02495 0.77 +0.4
508,607 + ABID97_RS02495 0.77 -0.0
508,608 - ABID97_RS02495 0.78 -0.4
508,608 - ABID97_RS02495 0.78 +0.2
508,608 - ABID97_RS02495 0.78 -0.2
508,608 - ABID97_RS02495 0.78 -0.0
508,608 - ABID97_RS02495 0.78 +0.5
508,673 - +0.3
508,673 - -0.6
508,673 - -0.0
508,682 - -0.3
508,682 - -1.2
508,684 + +0.0
508,684 + -1.0
508,684 + -1.6
508,684 + +0.6
508,684 + -0.4
508,684 + +1.4
508,684 + -0.2
508,685 - +0.3
508,685 - -0.3
508,750 + -0.2
508,751 - +0.4
509,068 + ABID97_RS02500 0.24 +0.7
509,069 - ABID97_RS02500 0.24 -0.3
509,069 - ABID97_RS02500 0.24 +0.0
509,069 - ABID97_RS02500 0.24 -0.3
509,086 + ABID97_RS02500 0.25 +0.5
509,086 + ABID97_RS02500 0.25 +0.0
509,086 + ABID97_RS02500 0.25 -0.8
509,086 + ABID97_RS02500 0.25 -0.1
509,086 + ABID97_RS02500 0.25 +0.6
509,086 + ABID97_RS02500 0.25 +1.0
509,086 + ABID97_RS02500 0.25 -0.5
509,087 - ABID97_RS02500 0.25 +0.2
509,087 - ABID97_RS02500 0.25 +0.2
509,087 - ABID97_RS02500 0.25 -0.3
509,104 + ABID97_RS02500 0.26 -0.4
509,104 + ABID97_RS02500 0.26 +1.0
509,105 - ABID97_RS02500 0.26 -0.3
509,110 + ABID97_RS02500 0.27 -0.1
509,110 + ABID97_RS02500 0.27 -0.6
509,111 - ABID97_RS02500 0.27 -1.3
509,122 + ABID97_RS02500 0.27 -0.5
509,122 + ABID97_RS02500 0.27 +0.1
509,123 - ABID97_RS02500 0.28 +0.5
509,123 - ABID97_RS02500 0.28 -0.0
509,123 - ABID97_RS02500 0.28 -0.3
509,123 - ABID97_RS02500 0.28 -0.1
509,137 + ABID97_RS02500 0.28 +0.2
509,137 + ABID97_RS02500 0.28 +0.4
509,137 + ABID97_RS02500 0.28 +0.4
509,137 + ABID97_RS02500 0.28 +0.3
509,137 + ABID97_RS02500 0.28 -0.2
509,138 - ABID97_RS02500 0.29 +0.2
509,138 - ABID97_RS02500 0.29 -0.1
509,138 - ABID97_RS02500 0.29 +0.5
509,248 + ABID97_RS02500 0.36 -0.1
509,248 + ABID97_RS02500 0.36 +0.2
509,248 + ABID97_RS02500 0.36 -0.6
509,248 + ABID97_RS02500 0.36 -0.7
509,248 + ABID97_RS02500 0.36 +0.2
509,248 + ABID97_RS02500 0.36 +0.3
509,249 - ABID97_RS02500 0.36 +0.2
509,257 + ABID97_RS02500 0.37 +0.6
509,257 + ABID97_RS02500 0.37 -0.0
509,258 - ABID97_RS02500 0.37 -0.6
509,258 - ABID97_RS02500 0.37 -0.1

Or see this region's nucleotide sequence