Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02445 and ABID97_RS02450 are separated by 135 nucleotides ABID97_RS02450 and ABID97_RS02455 are separated by 23 nucleotides ABID97_RS02455 and ABID97_RS02460 overlap by 4 nucleotides
ABID97_RS02445: ABID97_RS02445 - transketolase, at 489,766 to 491,874
_RS02445
ABID97_RS02450: ABID97_RS02450 - adenosylmethionine decarboxylase, at 492,010 to 492,390
_RS02450
ABID97_RS02455: ABID97_RS02455 - nucleotidyltransferase family protein, at 492,414 to 493,124
_RS02455
ABID97_RS02460: ABID97_RS02460 - aminopeptidase P N-terminal domain-containing protein, at 493,121 to 494,515
_RS02460
Position (kb) 492
493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 491.996 kb on + strand at 491.996 kb on + strand at 491.996 kb on + strand at 491.996 kb on + strand at 491.996 kb on + strand at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.265 kb on + strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.266 kb on - strand, within ABID97_RS02450 at 492.909 kb on + strand, within ABID97_RS02455 at 492.909 kb on + strand, within ABID97_RS02455 at 492.909 kb on + strand, within ABID97_RS02455 at 492.909 kb on + strand, within ABID97_RS02455 at 492.910 kb on - strand, within ABID97_RS02455 at 492.933 kb on + strand, within ABID97_RS02455 at 493.060 kb on - strand at 493.060 kb on - strand at 493.060 kb on - strand at 493.145 kb on + strand at 493.145 kb on + strand at 493.145 kb on + strand at 493.265 kb on + strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.266 kb on - strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.271 kb on + strand, within ABID97_RS02460 at 493.272 kb on - strand, within ABID97_RS02460 at 493.272 kb on - strand, within ABID97_RS02460 at 493.272 kb on - strand, within ABID97_RS02460 at 493.272 kb on - strand, within ABID97_RS02460 at 493.272 kb on - strand, within ABID97_RS02460 at 493.274 kb on + strand, within ABID97_RS02460 at 493.274 kb on + strand, within ABID97_RS02460 at 493.931 kb on + strand, within ABID97_RS02460 at 493.942 kb on + strand, within ABID97_RS02460 at 493.997 kb on + strand, within ABID97_RS02460 at 493.998 kb on - strand, within ABID97_RS02460
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 491,996 + +0.1 491,996 + -0.3 491,996 + -0.4 491,996 + -0.4 491,996 + -0.0 492,265 + ABID97_RS02450 0.67 +0.1 492,265 + ABID97_RS02450 0.67 -1.6 492,265 + ABID97_RS02450 0.67 -0.5 492,265 + ABID97_RS02450 0.67 +0.3 492,265 + ABID97_RS02450 0.67 +1.7 492,265 + ABID97_RS02450 0.67 -0.0 492,265 + ABID97_RS02450 0.67 +0.1 492,265 + ABID97_RS02450 0.67 -0.4 492,265 + ABID97_RS02450 0.67 -0.4 492,266 - ABID97_RS02450 0.67 +0.1 492,266 - ABID97_RS02450 0.67 -0.4 492,266 - ABID97_RS02450 0.67 -0.4 492,266 - ABID97_RS02450 0.67 +0.5 492,266 - ABID97_RS02450 0.67 -0.3 492,266 - ABID97_RS02450 0.67 +0.0 492,266 - ABID97_RS02450 0.67 -1.1 492,266 - ABID97_RS02450 0.67 -0.4 492,266 - ABID97_RS02450 0.67 +0.0 492,909 + ABID97_RS02455 0.70 -1.9 492,909 + ABID97_RS02455 0.70 -1.6 492,909 + ABID97_RS02455 0.70 -2.6 492,909 + ABID97_RS02455 0.70 -0.7 492,910 - ABID97_RS02455 0.70 -2.6 492,933 + ABID97_RS02455 0.73 -1.7 493,060 - -1.6 493,060 - -1.0 493,060 - -1.4 493,145 + -1.6 493,145 + -3.3 493,145 + -2.6 493,265 + ABID97_RS02460 0.10 -1.4 493,266 - ABID97_RS02460 0.10 -0.9 493,266 - ABID97_RS02460 0.10 -1.7 493,266 - ABID97_RS02460 0.10 -2.4 493,266 - ABID97_RS02460 0.10 -3.5 493,266 - ABID97_RS02460 0.10 +0.7 493,266 - ABID97_RS02460 0.10 +0.5 493,266 - ABID97_RS02460 0.10 +0.4 493,266 - ABID97_RS02460 0.10 -3.3 493,266 - ABID97_RS02460 0.10 -0.4 493,266 - ABID97_RS02460 0.10 -0.9 493,271 + ABID97_RS02460 0.11 -2.0 493,271 + ABID97_RS02460 0.11 -3.0 493,271 + ABID97_RS02460 0.11 -1.0 493,271 + ABID97_RS02460 0.11 +1.3 493,271 + ABID97_RS02460 0.11 -1.7 493,271 + ABID97_RS02460 0.11 -3.8 493,271 + ABID97_RS02460 0.11 -2.2 493,271 + ABID97_RS02460 0.11 -0.1 493,272 - ABID97_RS02460 0.11 -1.5 493,272 - ABID97_RS02460 0.11 -2.7 493,272 - ABID97_RS02460 0.11 -1.5 493,272 - ABID97_RS02460 0.11 -1.4 493,272 - ABID97_RS02460 0.11 +0.3 493,274 + ABID97_RS02460 0.11 -0.6 493,274 + ABID97_RS02460 0.11 -0.8 493,931 + ABID97_RS02460 0.58 -1.5 493,942 + ABID97_RS02460 0.59 -1.1 493,997 + ABID97_RS02460 0.63 -1.6 493,998 - ABID97_RS02460 0.63 -0.0
Or see this region's nucleotide sequence