Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02125

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02115 and ABID97_RS02120 overlap by 4 nucleotidesABID97_RS02120 and ABID97_RS02125 are separated by 13 nucleotidesABID97_RS02125 and ABID97_RS02130 overlap by 4 nucleotidesABID97_RS02130 and ABID97_RS02135 overlap by 4 nucleotides ABID97_RS02115: ABID97_RS02115 - PilW family protein, at 424,395 to 425,426 _RS02115 ABID97_RS02120: ABID97_RS02120 - PilX N-terminal domain-containing pilus assembly protein, at 425,423 to 426,046 _RS02120 ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451 _RS02125 ABID97_RS02130: ABID97_RS02130 - type IV pilin protein, at 430,448 to 430,909 _RS02130 ABID97_RS02135: ABID97_RS02135 - GspH/FimT family pseudopilin, at 430,906 to 431,481 _RS02135 Position (kb) 426 427 428 429 430 431Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 425.081 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.127 kb on + strand, within ABID97_RS02115at 425.128 kb on - strand, within ABID97_RS02115at 425.128 kb on - strand, within ABID97_RS02115at 425.422 kb on + strandat 425.422 kb on + strandat 425.423 kb on - strandat 425.423 kb on - strandat 425.423 kb on - strandat 425.429 kb on + strandat 425.429 kb on + strandat 425.429 kb on + strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.430 kb on - strandat 425.903 kb on + strand, within ABID97_RS02120at 425.904 kb on - strand, within ABID97_RS02120at 425.904 kb on - strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.966 kb on + strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 425.967 kb on - strand, within ABID97_RS02120at 426.273 kb on + strandat 426.348 kb on + strandat 426.348 kb on + strandat 426.349 kb on - strandat 426.349 kb on - strandat 426.378 kb on + strandat 426.379 kb on - strandat 426.397 kb on - strandat 426.406 kb on - strandat 426.406 kb on - strandat 426.409 kb on - strandat 426.433 kb on - strandat 426.433 kb on - strandat 426.433 kb on - strandat 426.484 kb on - strandat 426.484 kb on - strandat 426.628 kb on - strand, within ABID97_RS02125at 426.840 kb on + strand, within ABID97_RS02125at 426.840 kb on + strand, within ABID97_RS02125at 426.840 kb on + strand, within ABID97_RS02125at 426.840 kb on + strand, within ABID97_RS02125at 426.841 kb on - strand, within ABID97_RS02125at 426.841 kb on - strand, within ABID97_RS02125at 426.886 kb on - strand, within ABID97_RS02125at 427.119 kb on + strand, within ABID97_RS02125at 427.176 kb on + strand, within ABID97_RS02125at 427.177 kb on - strand, within ABID97_RS02125at 427.296 kb on + strand, within ABID97_RS02125at 427.297 kb on - strand, within ABID97_RS02125at 427.353 kb on + strand, within ABID97_RS02125at 427.399 kb on - strand, within ABID97_RS02125at 427.421 kb on + strand, within ABID97_RS02125at 427.421 kb on + strand, within ABID97_RS02125at 427.422 kb on - strand, within ABID97_RS02125at 427.425 kb on + strand, within ABID97_RS02125at 427.425 kb on + strand, within ABID97_RS02125at 427.425 kb on + strand, within ABID97_RS02125at 427.425 kb on + strand, within ABID97_RS02125at 427.426 kb on - strand, within ABID97_RS02125at 427.542 kb on + strand, within ABID97_RS02125at 427.581 kb on + strand, within ABID97_RS02125at 427.582 kb on - strand, within ABID97_RS02125at 427.582 kb on - strand, within ABID97_RS02125at 427.612 kb on - strand, within ABID97_RS02125at 427.614 kb on + strand, within ABID97_RS02125at 427.629 kb on + strand, within ABID97_RS02125at 427.629 kb on + strand, within ABID97_RS02125at 427.629 kb on + strand, within ABID97_RS02125at 427.629 kb on + strand, within ABID97_RS02125at 427.630 kb on - strand, within ABID97_RS02125at 427.630 kb on - strand, within ABID97_RS02125at 427.630 kb on - strand, within ABID97_RS02125at 427.705 kb on - strand, within ABID97_RS02125at 427.705 kb on - strand, within ABID97_RS02125at 427.761 kb on + strand, within ABID97_RS02125at 427.761 kb on + strand, within ABID97_RS02125at 427.761 kb on + strand, within ABID97_RS02125at 427.762 kb on - strand, within ABID97_RS02125at 427.861 kb on + strand, within ABID97_RS02125at 427.914 kb on + strand, within ABID97_RS02125at 427.914 kb on + strand, within ABID97_RS02125at 427.914 kb on + strand, within ABID97_RS02125at 427.914 kb on + strand, within ABID97_RS02125at 427.915 kb on - strand, within ABID97_RS02125at 427.916 kb on + strand, within ABID97_RS02125at 427.916 kb on + strand, within ABID97_RS02125at 428.004 kb on + strand, within ABID97_RS02125at 428.005 kb on - strand, within ABID97_RS02125at 428.172 kb on + strand, within ABID97_RS02125at 428.222 kb on + strand, within ABID97_RS02125at 428.223 kb on - strand, within ABID97_RS02125at 428.223 kb on - strand, within ABID97_RS02125at 428.223 kb on - strand, within ABID97_RS02125at 428.310 kb on + strand, within ABID97_RS02125at 428.310 kb on + strand, within ABID97_RS02125at 428.311 kb on - strand, within ABID97_RS02125at 428.311 kb on - strand, within ABID97_RS02125at 428.311 kb on - strand, within ABID97_RS02125at 428.311 kb on - strand, within ABID97_RS02125at 428.311 kb on - strand, within ABID97_RS02125at 428.313 kb on + strand, within ABID97_RS02125at 428.313 kb on + strand, within ABID97_RS02125at 428.314 kb on - strand, within ABID97_RS02125at 428.442 kb on + strand, within ABID97_RS02125at 428.443 kb on - strand, within ABID97_RS02125at 428.649 kb on - strand, within ABID97_RS02125at 428.649 kb on - strand, within ABID97_RS02125at 428.742 kb on + strand, within ABID97_RS02125at 428.742 kb on + strand, within ABID97_RS02125at 428.742 kb on + strand, within ABID97_RS02125at 428.743 kb on - strand, within ABID97_RS02125at 428.871 kb on + strand, within ABID97_RS02125at 428.871 kb on + strand, within ABID97_RS02125at 428.872 kb on - strand, within ABID97_RS02125at 428.982 kb on + strand, within ABID97_RS02125at 428.982 kb on + strand, within ABID97_RS02125at 428.983 kb on - strand, within ABID97_RS02125at 428.983 kb on - strand, within ABID97_RS02125at 429.034 kb on - strand, within ABID97_RS02125at 429.034 kb on - strand, within ABID97_RS02125at 429.034 kb on - strand, within ABID97_RS02125at 429.034 kb on - strand, within ABID97_RS02125at 429.034 kb on - strand, within ABID97_RS02125at 429.034 kb on - strand, within ABID97_RS02125at 429.054 kb on + strand, within ABID97_RS02125at 429.054 kb on + strand, within ABID97_RS02125at 429.054 kb on + strand, within ABID97_RS02125at 429.055 kb on - strand, within ABID97_RS02125at 429.055 kb on - strand, within ABID97_RS02125at 429.055 kb on - strand, within ABID97_RS02125at 429.315 kb on + strand, within ABID97_RS02125at 429.315 kb on + strand, within ABID97_RS02125at 429.316 kb on - strand, within ABID97_RS02125at 429.316 kb on - strand, within ABID97_RS02125at 429.316 kb on - strand, within ABID97_RS02125at 429.354 kb on + strand, within ABID97_RS02125at 429.354 kb on + strand, within ABID97_RS02125at 429.355 kb on - strand, within ABID97_RS02125at 429.355 kb on - strand, within ABID97_RS02125at 429.462 kb on + strand, within ABID97_RS02125at 429.731 kb on + strand, within ABID97_RS02125at 429.731 kb on + strand, within ABID97_RS02125at 429.780 kb on + strand, within ABID97_RS02125at 429.781 kb on - strand, within ABID97_RS02125at 429.804 kb on + strand, within ABID97_RS02125at 429.849 kb on + strand, within ABID97_RS02125at 429.849 kb on + strand, within ABID97_RS02125at 429.849 kb on + strand, within ABID97_RS02125at 429.850 kb on - strand, within ABID97_RS02125at 430.425 kb on + strandat 430.425 kb on + strandat 430.425 kb on + strandat 430.425 kb on + strandat 430.426 kb on - strandat 430.622 kb on + strand, within ABID97_RS02130at 430.622 kb on + strand, within ABID97_RS02130at 430.623 kb on - strand, within ABID97_RS02130at 430.624 kb on + strand, within ABID97_RS02130at 430.625 kb on - strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.643 kb on + strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.644 kb on - strand, within ABID97_RS02130at 430.647 kb on + strand, within ABID97_RS02130at 430.839 kb on + strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.840 kb on - strand, within ABID97_RS02130at 430.852 kb on + strand, within ABID97_RS02130at 431.165 kb on + strand, within ABID97_RS02135at 431.165 kb on + strand, within ABID97_RS02135at 431.236 kb on + strand, within ABID97_RS02135at 431.236 kb on + strand, within ABID97_RS02135at 431.237 kb on - strand, within ABID97_RS02135at 431.281 kb on + strand, within ABID97_RS02135

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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425,081 + ABID97_RS02115 0.66 -1.0
425,127 + ABID97_RS02115 0.71 -1.8
425,127 + ABID97_RS02115 0.71 -1.6
425,127 + ABID97_RS02115 0.71 -2.4
425,127 + ABID97_RS02115 0.71 -1.2
425,128 - ABID97_RS02115 0.71 -1.1
425,128 - ABID97_RS02115 0.71 -1.7
425,422 + -0.1
425,422 + -0.4
425,423 - -1.6
425,423 - -3.6
425,423 - -1.1
425,429 + -1.9
425,429 + -1.1
425,429 + -1.6
425,430 - -2.2
425,430 - -1.8
425,430 - -1.2
425,430 - +0.0
425,430 - -1.6
425,903 + ABID97_RS02120 0.77 -3.2
425,904 - ABID97_RS02120 0.77 -1.8
425,904 - ABID97_RS02120 0.77 -0.8
425,966 + ABID97_RS02120 0.87 +1.1
425,966 + ABID97_RS02120 0.87 -0.8
425,966 + ABID97_RS02120 0.87 -1.6
425,966 + ABID97_RS02120 0.87 +0.0
425,966 + ABID97_RS02120 0.87 -0.5
425,967 - ABID97_RS02120 0.87 -2.5
425,967 - ABID97_RS02120 0.87 -2.5
425,967 - ABID97_RS02120 0.87 -2.7
425,967 - ABID97_RS02120 0.87 +0.5
425,967 - ABID97_RS02120 0.87 -2.3
425,967 - ABID97_RS02120 0.87 -0.9
425,967 - ABID97_RS02120 0.87 -0.2
425,967 - ABID97_RS02120 0.87 -2.4
425,967 - ABID97_RS02120 0.87 -2.8
426,273 + -2.2
426,348 + -0.9
426,348 + -1.8
426,349 - -3.7
426,349 - -3.5
426,378 + -0.6
426,379 - -2.1
426,397 - -2.3
426,406 - -0.9
426,406 - -2.1
426,409 - -0.3
426,433 - -2.6
426,433 - -2.0
426,433 - -1.9
426,484 - +1.1
426,484 - -0.6
426,628 - ABID97_RS02125 0.13 -1.7
426,840 + ABID97_RS02125 0.18 -1.3
426,840 + ABID97_RS02125 0.18 -2.0
426,840 + ABID97_RS02125 0.18 -1.9
426,840 + ABID97_RS02125 0.18 -1.5
426,841 - ABID97_RS02125 0.18 +0.3
426,841 - ABID97_RS02125 0.18 -1.9
426,886 - ABID97_RS02125 0.19 -1.8
427,119 + ABID97_RS02125 0.24 -1.6
427,176 + ABID97_RS02125 0.25 +0.2
427,177 - ABID97_RS02125 0.25 -2.2
427,296 + ABID97_RS02125 0.28 -2.3
427,297 - ABID97_RS02125 0.28 -1.4
427,353 + ABID97_RS02125 0.29 -1.6
427,399 - ABID97_RS02125 0.30 -0.4
427,421 + ABID97_RS02125 0.31 -0.6
427,421 + ABID97_RS02125 0.31 -0.3
427,422 - ABID97_RS02125 0.31 -2.6
427,425 + ABID97_RS02125 0.31 -1.9
427,425 + ABID97_RS02125 0.31 -2.1
427,425 + ABID97_RS02125 0.31 -0.5
427,425 + ABID97_RS02125 0.31 -0.1
427,426 - ABID97_RS02125 0.31 -0.8
427,542 + ABID97_RS02125 0.34 -1.8
427,581 + ABID97_RS02125 0.35 -2.8
427,582 - ABID97_RS02125 0.35 -0.9
427,582 - ABID97_RS02125 0.35 -1.6
427,612 - ABID97_RS02125 0.35 -1.6
427,614 + ABID97_RS02125 0.35 -2.4
427,629 + ABID97_RS02125 0.36 -1.2
427,629 + ABID97_RS02125 0.36 -1.2
427,629 + ABID97_RS02125 0.36 -0.6
427,629 + ABID97_RS02125 0.36 -1.8
427,630 - ABID97_RS02125 0.36 -1.7
427,630 - ABID97_RS02125 0.36 -0.8
427,630 - ABID97_RS02125 0.36 -2.7
427,705 - ABID97_RS02125 0.37 -1.3
427,705 - ABID97_RS02125 0.37 -1.5
427,761 + ABID97_RS02125 0.39 -1.6
427,761 + ABID97_RS02125 0.39 -3.2
427,761 + ABID97_RS02125 0.39 -1.7
427,762 - ABID97_RS02125 0.39 -1.3
427,861 + ABID97_RS02125 0.41 +1.1
427,914 + ABID97_RS02125 0.42 -2.2
427,914 + ABID97_RS02125 0.42 -2.0
427,914 + ABID97_RS02125 0.42 -3.8
427,914 + ABID97_RS02125 0.42 -1.4
427,915 - ABID97_RS02125 0.42 -2.0
427,916 + ABID97_RS02125 0.42 +0.8
427,916 + ABID97_RS02125 0.42 -1.8
428,004 + ABID97_RS02125 0.44 -1.7
428,005 - ABID97_RS02125 0.44 -2.0
428,172 + ABID97_RS02125 0.48 -0.8
428,222 + ABID97_RS02125 0.49 -2.3
428,223 - ABID97_RS02125 0.49 +1.1
428,223 - ABID97_RS02125 0.49 -0.8
428,223 - ABID97_RS02125 0.49 -2.1
428,310 + ABID97_RS02125 0.51 -2.2
428,310 + ABID97_RS02125 0.51 -3.1
428,311 - ABID97_RS02125 0.51 -0.5
428,311 - ABID97_RS02125 0.51 -3.7
428,311 - ABID97_RS02125 0.51 -3.3
428,311 - ABID97_RS02125 0.51 +0.5
428,311 - ABID97_RS02125 0.51 -1.4
428,313 + ABID97_RS02125 0.51 -1.0
428,313 + ABID97_RS02125 0.51 -2.0
428,314 - ABID97_RS02125 0.51 -3.6
428,442 + ABID97_RS02125 0.54 -0.7
428,443 - ABID97_RS02125 0.54 +0.9
428,649 - ABID97_RS02125 0.59 -2.0
428,649 - ABID97_RS02125 0.59 +0.2
428,742 + ABID97_RS02125 0.61 +0.0
428,742 + ABID97_RS02125 0.61 +0.6
428,742 + ABID97_RS02125 0.61 -1.3
428,743 - ABID97_RS02125 0.61 -1.8
428,871 + ABID97_RS02125 0.64 -0.8
428,871 + ABID97_RS02125 0.64 -0.9
428,872 - ABID97_RS02125 0.64 -2.0
428,982 + ABID97_RS02125 0.67 -0.8
428,982 + ABID97_RS02125 0.67 -3.0
428,983 - ABID97_RS02125 0.67 -1.2
428,983 - ABID97_RS02125 0.67 -1.9
429,034 - ABID97_RS02125 0.68 -2.7
429,034 - ABID97_RS02125 0.68 -1.1
429,034 - ABID97_RS02125 0.68 -2.4
429,034 - ABID97_RS02125 0.68 -2.2
429,034 - ABID97_RS02125 0.68 -0.8
429,034 - ABID97_RS02125 0.68 -2.2
429,054 + ABID97_RS02125 0.68 -0.7
429,054 + ABID97_RS02125 0.68 -0.3
429,054 + ABID97_RS02125 0.68 -1.6
429,055 - ABID97_RS02125 0.68 -2.5
429,055 - ABID97_RS02125 0.68 -1.4
429,055 - ABID97_RS02125 0.68 -0.9
429,315 + ABID97_RS02125 0.74 -2.7
429,315 + ABID97_RS02125 0.74 -0.1
429,316 - ABID97_RS02125 0.74 -1.2
429,316 - ABID97_RS02125 0.74 -0.6
429,316 - ABID97_RS02125 0.74 -2.1
429,354 + ABID97_RS02125 0.75 -1.6
429,354 + ABID97_RS02125 0.75 +0.0
429,355 - ABID97_RS02125 0.75 -3.4
429,355 - ABID97_RS02125 0.75 -2.5
429,462 + ABID97_RS02125 0.77 -2.1
429,731 + ABID97_RS02125 0.84 -0.9
429,731 + ABID97_RS02125 0.84 -0.1
429,780 + ABID97_RS02125 0.85 -2.5
429,781 - ABID97_RS02125 0.85 -1.1
429,804 + ABID97_RS02125 0.85 -2.2
429,849 + ABID97_RS02125 0.86 -0.6
429,849 + ABID97_RS02125 0.86 -2.6
429,849 + ABID97_RS02125 0.86 -0.9
429,850 - ABID97_RS02125 0.86 +0.2
430,425 + -1.6
430,425 + -1.9
430,425 + -2.3
430,425 + -1.0
430,426 - +0.0
430,622 + ABID97_RS02130 0.38 -2.0
430,622 + ABID97_RS02130 0.38 -1.9
430,623 - ABID97_RS02130 0.38 -1.9
430,624 + ABID97_RS02130 0.38 -3.0
430,625 - ABID97_RS02130 0.38 -1.8
430,643 + ABID97_RS02130 0.42 -1.2
430,643 + ABID97_RS02130 0.42 -1.0
430,643 + ABID97_RS02130 0.42 -0.5
430,643 + ABID97_RS02130 0.42 -2.2
430,643 + ABID97_RS02130 0.42 -2.4
430,644 - ABID97_RS02130 0.42 -0.7
430,644 - ABID97_RS02130 0.42 -1.3
430,644 - ABID97_RS02130 0.42 -1.9
430,644 - ABID97_RS02130 0.42 -0.9
430,644 - ABID97_RS02130 0.42 -0.8
430,644 - ABID97_RS02130 0.42 -1.9
430,644 - ABID97_RS02130 0.42 -3.0
430,644 - ABID97_RS02130 0.42 -0.4
430,647 + ABID97_RS02130 0.43 -1.2
430,839 + ABID97_RS02130 0.85 +0.9
430,840 - ABID97_RS02130 0.85 -1.1
430,840 - ABID97_RS02130 0.85 -0.6
430,840 - ABID97_RS02130 0.85 -0.4
430,852 + ABID97_RS02130 0.87 -0.4
431,165 + ABID97_RS02135 0.45 -1.4
431,165 + ABID97_RS02135 0.45 -1.4
431,236 + ABID97_RS02135 0.57 -1.2
431,236 + ABID97_RS02135 0.57 -2.9
431,237 - ABID97_RS02135 0.57 -0.5
431,281 + ABID97_RS02135 0.65 -2.2

Or see this region's nucleotide sequence