Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02115 and ABID97_RS02120 overlap by 4 nucleotides ABID97_RS02120 and ABID97_RS02125 are separated by 13 nucleotides
ABID97_RS02115: ABID97_RS02115 - PilW family protein, at 424,395 to 425,426
_RS02115
ABID97_RS02120: ABID97_RS02120 - PilX N-terminal domain-containing pilus assembly protein, at 425,423 to 426,046
_RS02120
ABID97_RS02125: ABID97_RS02125 - PilC/PilY family type IV pilus protein, at 426,060 to 430,451
_RS02125
Position (kb) 425
426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 424.771 kb on - strand, within ABID97_RS02115 at 424.771 kb on - strand, within ABID97_RS02115 at 424.788 kb on + strand, within ABID97_RS02115 at 424.789 kb on - strand, within ABID97_RS02115 at 424.915 kb on - strand, within ABID97_RS02115 at 424.984 kb on - strand, within ABID97_RS02115 at 424.984 kb on - strand, within ABID97_RS02115 at 424.984 kb on - strand, within ABID97_RS02115 at 425.081 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.128 kb on - strand, within ABID97_RS02115 at 425.128 kb on - strand, within ABID97_RS02115 at 425.422 kb on + strand at 425.422 kb on + strand at 425.423 kb on - strand at 425.423 kb on - strand at 425.423 kb on - strand at 425.429 kb on + strand at 425.429 kb on + strand at 425.429 kb on + strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.430 kb on - strand at 425.903 kb on + strand, within ABID97_RS02120 at 425.904 kb on - strand, within ABID97_RS02120 at 425.904 kb on - strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.966 kb on + strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 425.967 kb on - strand, within ABID97_RS02120 at 426.273 kb on + strand at 426.348 kb on + strand at 426.348 kb on + strand at 426.349 kb on - strand at 426.349 kb on - strand at 426.378 kb on + strand at 426.379 kb on - strand at 426.397 kb on - strand at 426.406 kb on - strand at 426.406 kb on - strand at 426.409 kb on - strand at 426.433 kb on - strand at 426.433 kb on - strand at 426.433 kb on - strand at 426.484 kb on - strand at 426.484 kb on - strand at 426.628 kb on - strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.840 kb on + strand, within ABID97_RS02125 at 426.841 kb on - strand, within ABID97_RS02125 at 426.841 kb on - strand, within ABID97_RS02125 at 426.886 kb on - strand, within ABID97_RS02125
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 424,771 - ABID97_RS02115 0.36 -2.1 424,771 - ABID97_RS02115 0.36 -2.6 424,788 + ABID97_RS02115 0.38 -2.0 424,789 - ABID97_RS02115 0.38 -1.2 424,915 - ABID97_RS02115 0.50 -1.2 424,984 - ABID97_RS02115 0.57 -1.7 424,984 - ABID97_RS02115 0.57 -2.8 424,984 - ABID97_RS02115 0.57 -1.0 425,081 + ABID97_RS02115 0.66 -1.0 425,127 + ABID97_RS02115 0.71 -1.8 425,127 + ABID97_RS02115 0.71 -1.6 425,127 + ABID97_RS02115 0.71 -2.4 425,127 + ABID97_RS02115 0.71 -1.2 425,128 - ABID97_RS02115 0.71 -1.1 425,128 - ABID97_RS02115 0.71 -1.7 425,422 + -0.1 425,422 + -0.4 425,423 - -1.6 425,423 - -3.6 425,423 - -1.1 425,429 + -1.9 425,429 + -1.1 425,429 + -1.6 425,430 - -2.2 425,430 - -1.8 425,430 - -1.2 425,430 - +0.0 425,430 - -1.6 425,903 + ABID97_RS02120 0.77 -3.2 425,904 - ABID97_RS02120 0.77 -1.8 425,904 - ABID97_RS02120 0.77 -0.8 425,966 + ABID97_RS02120 0.87 +1.1 425,966 + ABID97_RS02120 0.87 -0.8 425,966 + ABID97_RS02120 0.87 -1.6 425,966 + ABID97_RS02120 0.87 +0.0 425,966 + ABID97_RS02120 0.87 -0.5 425,967 - ABID97_RS02120 0.87 -2.5 425,967 - ABID97_RS02120 0.87 -2.5 425,967 - ABID97_RS02120 0.87 -2.7 425,967 - ABID97_RS02120 0.87 +0.5 425,967 - ABID97_RS02120 0.87 -2.3 425,967 - ABID97_RS02120 0.87 -0.9 425,967 - ABID97_RS02120 0.87 -0.2 425,967 - ABID97_RS02120 0.87 -2.4 425,967 - ABID97_RS02120 0.87 -2.8 426,273 + -2.2 426,348 + -0.9 426,348 + -1.8 426,349 - -3.7 426,349 - -3.5 426,378 + -0.6 426,379 - -2.1 426,397 - -2.3 426,406 - -0.9 426,406 - -2.1 426,409 - -0.3 426,433 - -2.6 426,433 - -2.0 426,433 - -1.9 426,484 - +1.1 426,484 - -0.6 426,628 - ABID97_RS02125 0.13 -1.7 426,840 + ABID97_RS02125 0.18 -1.3 426,840 + ABID97_RS02125 0.18 -2.0 426,840 + ABID97_RS02125 0.18 -1.9 426,840 + ABID97_RS02125 0.18 -1.5 426,841 - ABID97_RS02125 0.18 +0.3 426,841 - ABID97_RS02125 0.18 -1.9 426,886 - ABID97_RS02125 0.19 -1.8
Or see this region's nucleotide sequence