Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02105 and ABID97_RS02110 are separated by 128 nucleotides ABID97_RS02110 and ABID97_RS02115 overlap by 4 nucleotides
ABID97_RS02105: ABID97_RS02105 - Wzy polymerase domain-containing protein, at 421,946 to 423,682
_RS02105
ABID97_RS02110: ABID97_RS02110 - type IV pilus modification protein PilV, at 423,811 to 424,398
_RS02110
ABID97_RS02115: ABID97_RS02115 - PilW family protein, at 424,395 to 425,426
_RS02115
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 422.887 kb on - strand, within ABID97_RS02105 at 423.125 kb on + strand, within ABID97_RS02105 at 423.189 kb on + strand, within ABID97_RS02105 at 423.190 kb on - strand, within ABID97_RS02105 at 423.246 kb on + strand, within ABID97_RS02105 at 423.246 kb on + strand, within ABID97_RS02105 at 423.246 kb on + strand, within ABID97_RS02105 at 423.247 kb on - strand, within ABID97_RS02105 at 423.250 kb on - strand, within ABID97_RS02105 at 423.250 kb on - strand, within ABID97_RS02105 at 423.319 kb on + strand, within ABID97_RS02105 at 423.319 kb on + strand, within ABID97_RS02105 at 423.721 kb on - strand at 423.879 kb on - strand, within ABID97_RS02110 at 423.879 kb on - strand, within ABID97_RS02110 at 423.917 kb on + strand, within ABID97_RS02110 at 423.918 kb on - strand, within ABID97_RS02110 at 423.918 kb on - strand, within ABID97_RS02110 at 423.980 kb on + strand, within ABID97_RS02110 at 423.980 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.096 kb on + strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.097 kb on - strand, within ABID97_RS02110 at 424.229 kb on - strand, within ABID97_RS02110 at 424.771 kb on - strand, within ABID97_RS02115 at 424.771 kb on - strand, within ABID97_RS02115 at 424.788 kb on + strand, within ABID97_RS02115 at 424.789 kb on - strand, within ABID97_RS02115 at 424.915 kb on - strand, within ABID97_RS02115 at 424.984 kb on - strand, within ABID97_RS02115 at 424.984 kb on - strand, within ABID97_RS02115 at 424.984 kb on - strand, within ABID97_RS02115 at 425.081 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.127 kb on + strand, within ABID97_RS02115 at 425.128 kb on - strand, within ABID97_RS02115 at 425.128 kb on - strand, within ABID97_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 422,887 - ABID97_RS02105 0.54 -0.2 423,125 + ABID97_RS02105 0.68 +0.2 423,189 + ABID97_RS02105 0.72 +0.1 423,190 - ABID97_RS02105 0.72 -0.3 423,246 + ABID97_RS02105 0.75 +0.5 423,246 + ABID97_RS02105 0.75 -0.5 423,246 + ABID97_RS02105 0.75 -1.1 423,247 - ABID97_RS02105 0.75 -0.4 423,250 - ABID97_RS02105 0.75 +0.8 423,250 - ABID97_RS02105 0.75 +0.0 423,319 + ABID97_RS02105 0.79 +0.5 423,319 + ABID97_RS02105 0.79 -0.5 423,721 - -1.8 423,879 - ABID97_RS02110 0.12 -1.9 423,879 - ABID97_RS02110 0.12 -2.4 423,917 + ABID97_RS02110 0.18 +0.4 423,918 - ABID97_RS02110 0.18 -2.1 423,918 - ABID97_RS02110 0.18 +0.4 423,980 + ABID97_RS02110 0.29 -1.5 423,980 + ABID97_RS02110 0.29 -2.0 424,096 + ABID97_RS02110 0.48 -3.6 424,096 + ABID97_RS02110 0.48 -0.3 424,096 + ABID97_RS02110 0.48 -2.6 424,096 + ABID97_RS02110 0.48 -2.1 424,096 + ABID97_RS02110 0.48 -1.5 424,096 + ABID97_RS02110 0.48 -1.6 424,096 + ABID97_RS02110 0.48 -0.8 424,096 + ABID97_RS02110 0.48 -1.4 424,096 + ABID97_RS02110 0.48 -2.5 424,096 + ABID97_RS02110 0.48 -2.0 424,096 + ABID97_RS02110 0.48 -1.0 424,097 - ABID97_RS02110 0.49 +0.0 424,097 - ABID97_RS02110 0.49 -3.5 424,097 - ABID97_RS02110 0.49 -1.8 424,097 - ABID97_RS02110 0.49 -1.7 424,097 - ABID97_RS02110 0.49 -1.8 424,097 - ABID97_RS02110 0.49 -0.5 424,097 - ABID97_RS02110 0.49 -1.2 424,097 - ABID97_RS02110 0.49 -1.7 424,097 - ABID97_RS02110 0.49 -1.7 424,097 - ABID97_RS02110 0.49 -2.1 424,097 - ABID97_RS02110 0.49 -0.9 424,229 - ABID97_RS02110 0.71 -1.5 424,771 - ABID97_RS02115 0.36 -2.1 424,771 - ABID97_RS02115 0.36 -2.6 424,788 + ABID97_RS02115 0.38 -2.0 424,789 - ABID97_RS02115 0.38 -1.2 424,915 - ABID97_RS02115 0.50 -1.2 424,984 - ABID97_RS02115 0.57 -1.7 424,984 - ABID97_RS02115 0.57 -2.8 424,984 - ABID97_RS02115 0.57 -1.0 425,081 + ABID97_RS02115 0.66 -1.0 425,127 + ABID97_RS02115 0.71 -1.8 425,127 + ABID97_RS02115 0.71 -1.6 425,127 + ABID97_RS02115 0.71 -2.4 425,127 + ABID97_RS02115 0.71 -1.2 425,128 - ABID97_RS02115 0.71 -1.1 425,128 - ABID97_RS02115 0.71 -1.7
Or see this region's nucleotide sequence