Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01830 and ABID97_RS01835 are separated by 73 nucleotides ABID97_RS01835 and ABID97_RS01840 are separated by 18 nucleotides ABID97_RS01840 and ABID97_RS01845 are separated by 138 nucleotides
ABID97_RS01830: ABID97_RS01830 - DNA-processing protein DprA, at 357,606 to 358,766
_RS01830
ABID97_RS01835: ABID97_RS01835 - DUF494 domain-containing protein, at 358,840 to 359,358
_RS01835
ABID97_RS01840: ABID97_RS01840 - DUF1631 family protein, at 359,377 to 361,728
_RS01840
ABID97_RS01845: ABID97_RS01845 - protein translocase subunit SecF, at 361,867 to 362,820
_RS01845
Position (kb) 359
360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.764 kb on + strand at 358.828 kb on + strand at 358.829 kb on - strand at 358.829 kb on - strand at 358.830 kb on + strand at 358.830 kb on + strand at 358.831 kb on - strand at 359.104 kb on + strand, within ABID97_RS01835 at 359.105 kb on - strand, within ABID97_RS01835 at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.486 kb on + strand at 359.487 kb on - strand at 359.487 kb on - strand at 359.512 kb on + strand at 359.513 kb on - strand at 360.185 kb on + strand, within ABID97_RS01840 at 360.185 kb on + strand, within ABID97_RS01840 at 360.185 kb on + strand, within ABID97_RS01840 at 360.186 kb on - strand, within ABID97_RS01840 at 360.186 kb on - strand, within ABID97_RS01840 at 360.266 kb on + strand, within ABID97_RS01840 at 360.266 kb on + strand, within ABID97_RS01840 at 360.266 kb on + strand, within ABID97_RS01840 at 360.267 kb on - strand, within ABID97_RS01840 at 360.630 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.707 kb on + strand, within ABID97_RS01840 at 360.708 kb on - strand, within ABID97_RS01840 at 360.708 kb on - strand, within ABID97_RS01840 at 360.708 kb on - strand, within ABID97_RS01840 at 360.729 kb on - strand, within ABID97_RS01840 at 361.815 kb on + strand at 361.815 kb on + strand at 361.815 kb on + strand at 361.815 kb on + strand at 361.816 kb on - strand at 361.816 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 358,764 + -0.2 358,828 + +0.3 358,829 - -0.0 358,829 - -0.2 358,830 + -0.0 358,830 + -0.9 358,831 - -1.4 359,104 + ABID97_RS01835 0.51 -0.0 359,105 - ABID97_RS01835 0.51 +0.1 359,378 + +0.0 359,378 + +0.1 359,378 + +0.1 359,378 + +0.2 359,378 + -0.4 359,378 + -0.0 359,378 + -0.3 359,379 - -0.0 359,379 - -0.2 359,379 - +0.1 359,379 - -0.5 359,379 - -0.0 359,486 + -2.6 359,487 - -0.7 359,487 - -1.3 359,512 + -0.0 359,513 - -1.7 360,185 + ABID97_RS01840 0.34 -1.6 360,185 + ABID97_RS01840 0.34 -1.7 360,185 + ABID97_RS01840 0.34 -0.5 360,186 - ABID97_RS01840 0.34 -1.2 360,186 - ABID97_RS01840 0.34 -1.2 360,266 + ABID97_RS01840 0.38 -1.4 360,266 + ABID97_RS01840 0.38 -1.1 360,266 + ABID97_RS01840 0.38 -1.7 360,267 - ABID97_RS01840 0.38 -0.4 360,630 + ABID97_RS01840 0.53 -2.0 360,707 + ABID97_RS01840 0.57 -1.8 360,707 + ABID97_RS01840 0.57 -3.2 360,707 + ABID97_RS01840 0.57 -1.5 360,707 + ABID97_RS01840 0.57 -0.3 360,707 + ABID97_RS01840 0.57 -1.8 360,707 + ABID97_RS01840 0.57 -1.3 360,707 + ABID97_RS01840 0.57 -1.8 360,707 + ABID97_RS01840 0.57 -1.5 360,707 + ABID97_RS01840 0.57 -0.5 360,707 + ABID97_RS01840 0.57 -2.9 360,707 + ABID97_RS01840 0.57 +0.9 360,708 - ABID97_RS01840 0.57 -1.4 360,708 - ABID97_RS01840 0.57 -1.8 360,708 - ABID97_RS01840 0.57 -3.0 360,729 - ABID97_RS01840 0.57 -1.1 361,815 + +0.1 361,815 + -1.1 361,815 + -0.6 361,815 + -0.5 361,816 - +1.0 361,816 - +1.9
Or see this region's nucleotide sequence