Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01710 and ABID97_RS01715 are separated by 126 nucleotides ABID97_RS01715 and ABID97_RS01720 are separated by 41 nucleotides ABID97_RS01720 and ABID97_RS01725 are separated by 62 nucleotides ABID97_RS01725 and ABID97_RS01730 are separated by 25 nucleotides
ABID97_RS01710: ABID97_RS01710 - tetratricopeptide repeat protein, at 335,806 to 336,726
_RS01710
ABID97_RS01715: ABID97_RS01715 - helix-turn-helix transcriptional regulator, at 336,853 to 337,161
_RS01715
ABID97_RS01720: ABID97_RS01720 - HipA domain-containing protein, at 337,203 to 338,483
_RS01720
ABID97_RS01725: ABID97_RS01725 - META domain-containing protein, at 338,546 to 338,986
_RS01725
ABID97_RS01730: ABID97_RS01730 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 339,012 to 339,917
_RS01730
Position (kb) 337
338
339 Strain fitness (log2 ratio) -1
0
1
2 at 336.277 kb on + strand, within ABID97_RS01710 at 336.278 kb on - strand, within ABID97_RS01710 at 336.604 kb on + strand, within ABID97_RS01710 at 336.604 kb on + strand, within ABID97_RS01710 at 336.604 kb on + strand, within ABID97_RS01710 at 336.604 kb on + strand, within ABID97_RS01710 at 336.605 kb on - strand, within ABID97_RS01710 at 336.605 kb on - strand, within ABID97_RS01710 at 336.692 kb on - strand at 336.717 kb on - strand at 337.206 kb on + strand at 337.206 kb on + strand at 337.207 kb on - strand at 337.257 kb on + strand at 337.258 kb on - strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.293 kb on + strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.294 kb on - strand at 337.422 kb on + strand, within ABID97_RS01720 at 337.422 kb on + strand, within ABID97_RS01720 at 337.422 kb on + strand, within ABID97_RS01720 at 337.422 kb on + strand, within ABID97_RS01720 at 337.716 kb on + strand, within ABID97_RS01720 at 337.983 kb on + strand, within ABID97_RS01720 at 337.983 kb on + strand, within ABID97_RS01720 at 337.983 kb on + strand, within ABID97_RS01720 at 338.001 kb on + strand, within ABID97_RS01720 at 338.001 kb on + strand, within ABID97_RS01720 at 338.001 kb on + strand, within ABID97_RS01720 at 338.002 kb on - strand, within ABID97_RS01720 at 338.196 kb on + strand, within ABID97_RS01720 at 338.196 kb on + strand, within ABID97_RS01720 at 338.247 kb on + strand, within ABID97_RS01720 at 338.248 kb on - strand, within ABID97_RS01720 at 338.482 kb on - strand at 338.497 kb on - strand at 338.903 kb on + strand, within ABID97_RS01725 at 339.164 kb on - strand, within ABID97_RS01730
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 336,277 + ABID97_RS01710 0.51 +0.1 336,278 - ABID97_RS01710 0.51 +0.3 336,604 + ABID97_RS01710 0.87 +1.5 336,604 + ABID97_RS01710 0.87 +0.1 336,604 + ABID97_RS01710 0.87 +0.8 336,604 + ABID97_RS01710 0.87 +0.9 336,605 - ABID97_RS01710 0.87 -0.2 336,605 - ABID97_RS01710 0.87 -0.6 336,692 - +0.4 336,717 - +0.5 337,206 + -0.6 337,206 + +0.6 337,207 - -0.3 337,257 + +0.7 337,258 - -0.4 337,293 + +0.2 337,293 + -0.2 337,293 + +2.4 337,293 + -0.2 337,293 + +0.1 337,293 + -0.4 337,293 + -0.3 337,293 + -0.4 337,294 - -0.0 337,294 - -0.1 337,294 - -0.7 337,294 - -0.2 337,294 - +0.4 337,294 - -0.9 337,294 - -0.4 337,294 - +0.6 337,294 - -0.4 337,422 + ABID97_RS01720 0.17 -0.1 337,422 + ABID97_RS01720 0.17 -0.7 337,422 + ABID97_RS01720 0.17 -0.3 337,422 + ABID97_RS01720 0.17 -0.0 337,716 + ABID97_RS01720 0.40 -0.1 337,983 + ABID97_RS01720 0.61 +0.9 337,983 + ABID97_RS01720 0.61 -0.0 337,983 + ABID97_RS01720 0.61 -1.5 338,001 + ABID97_RS01720 0.62 -0.2 338,001 + ABID97_RS01720 0.62 -0.9 338,001 + ABID97_RS01720 0.62 +0.3 338,002 - ABID97_RS01720 0.62 +0.0 338,196 + ABID97_RS01720 0.78 -0.2 338,196 + ABID97_RS01720 0.78 +0.0 338,247 + ABID97_RS01720 0.81 -1.2 338,248 - ABID97_RS01720 0.82 -1.2 338,482 - +1.8 338,497 - -0.5 338,903 + ABID97_RS01725 0.81 -1.1 339,164 - ABID97_RS01730 0.17 +0.5
Or see this region's nucleotide sequence