Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01615 and ABID97_RS01620 are separated by 47 nucleotides ABID97_RS01620 and ABID97_RS01625 overlap by 4 nucleotides ABID97_RS01625 and ABID97_RS01630 are separated by 37 nucleotides
ABID97_RS01615: ABID97_RS01615 - serine endopeptidase, at 317,626 to 318,735
_RS01615
ABID97_RS01620: ABID97_RS01620 - DUF2145 domain-containing protein, at 318,783 to 319,577
_RS01620
ABID97_RS01625: ABID97_RS01625 - hypothetical protein, at 319,574 to 320,035
_RS01625
ABID97_RS01630: ABID97_RS01630 - YiaA/YiaB family inner membrane protein, at 320,073 to 320,576
_RS01630
Position (kb) 318
319
320 Strain fitness (log2 ratio) -1
0
1
2 at 317.892 kb on - strand, within ABID97_RS01615 at 317.892 kb on - strand, within ABID97_RS01615 at 317.892 kb on - strand, within ABID97_RS01615 at 317.911 kb on + strand, within ABID97_RS01615 at 317.978 kb on + strand, within ABID97_RS01615 at 318.017 kb on + strand, within ABID97_RS01615 at 318.018 kb on - strand, within ABID97_RS01615 at 318.114 kb on - strand, within ABID97_RS01615 at 318.784 kb on + strand at 318.784 kb on + strand at 318.785 kb on - strand at 318.785 kb on - strand at 319.082 kb on - strand, within ABID97_RS01620 at 319.099 kb on + strand, within ABID97_RS01620 at 319.099 kb on + strand, within ABID97_RS01620 at 319.099 kb on + strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.100 kb on - strand, within ABID97_RS01620 at 319.114 kb on + strand, within ABID97_RS01620 at 319.261 kb on + strand, within ABID97_RS01620 at 319.333 kb on + strand, within ABID97_RS01620 at 319.334 kb on - strand, within ABID97_RS01620 at 319.334 kb on - strand, within ABID97_RS01620 at 319.366 kb on + strand, within ABID97_RS01620 at 319.366 kb on + strand, within ABID97_RS01620 at 319.366 kb on + strand, within ABID97_RS01620 at 319.779 kb on + strand, within ABID97_RS01625 at 319.779 kb on + strand, within ABID97_RS01625 at 319.779 kb on + strand, within ABID97_RS01625 at 319.780 kb on - strand, within ABID97_RS01625 at 319.780 kb on - strand, within ABID97_RS01625 at 319.780 kb on - strand, within ABID97_RS01625 at 319.780 kb on - strand, within ABID97_RS01625 at 320.236 kb on + strand, within ABID97_RS01630 at 320.236 kb on + strand, within ABID97_RS01630 at 320.237 kb on - strand, within ABID97_RS01630 at 320.237 kb on - strand, within ABID97_RS01630 at 320.237 kb on - strand, within ABID97_RS01630 at 320.237 kb on - strand, within ABID97_RS01630 at 320.416 kb on + strand, within ABID97_RS01630 at 320.416 kb on + strand, within ABID97_RS01630 at 320.416 kb on + strand, within ABID97_RS01630 at 320.416 kb on + strand, within ABID97_RS01630 at 320.416 kb on + strand, within ABID97_RS01630 at 320.417 kb on - strand, within ABID97_RS01630 at 320.417 kb on - strand, within ABID97_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 317,892 - ABID97_RS01615 0.24 +1.9 317,892 - ABID97_RS01615 0.24 -0.1 317,892 - ABID97_RS01615 0.24 -0.5 317,911 + ABID97_RS01615 0.26 -0.9 317,978 + ABID97_RS01615 0.32 +0.6 318,017 + ABID97_RS01615 0.35 -0.3 318,018 - ABID97_RS01615 0.35 -0.1 318,114 - ABID97_RS01615 0.44 -0.5 318,784 + +0.1 318,784 + -1.5 318,785 - -0.2 318,785 - -1.1 319,082 - ABID97_RS01620 0.38 -0.2 319,099 + ABID97_RS01620 0.40 +0.8 319,099 + ABID97_RS01620 0.40 -1.0 319,099 + ABID97_RS01620 0.40 -0.3 319,100 - ABID97_RS01620 0.40 -0.3 319,100 - ABID97_RS01620 0.40 -0.3 319,100 - ABID97_RS01620 0.40 +0.2 319,100 - ABID97_RS01620 0.40 -0.0 319,114 + ABID97_RS01620 0.42 -1.2 319,261 + ABID97_RS01620 0.60 -0.0 319,333 + ABID97_RS01620 0.69 +1.0 319,334 - ABID97_RS01620 0.69 +0.1 319,334 - ABID97_RS01620 0.69 +0.9 319,366 + ABID97_RS01620 0.73 -0.6 319,366 + ABID97_RS01620 0.73 -0.5 319,366 + ABID97_RS01620 0.73 -1.2 319,779 + ABID97_RS01625 0.44 -0.1 319,779 + ABID97_RS01625 0.44 +0.1 319,779 + ABID97_RS01625 0.44 +0.5 319,780 - ABID97_RS01625 0.45 -0.7 319,780 - ABID97_RS01625 0.45 +0.4 319,780 - ABID97_RS01625 0.45 -0.1 319,780 - ABID97_RS01625 0.45 -0.3 320,236 + ABID97_RS01630 0.32 -0.4 320,236 + ABID97_RS01630 0.32 -0.8 320,237 - ABID97_RS01630 0.33 +2.2 320,237 - ABID97_RS01630 0.33 +0.6 320,237 - ABID97_RS01630 0.33 -0.5 320,237 - ABID97_RS01630 0.33 -0.7 320,416 + ABID97_RS01630 0.68 +0.3 320,416 + ABID97_RS01630 0.68 -0.2 320,416 + ABID97_RS01630 0.68 +0.5 320,416 + ABID97_RS01630 0.68 -0.7 320,416 + ABID97_RS01630 0.68 -0.1 320,417 - ABID97_RS01630 0.68 -0.2 320,417 - ABID97_RS01630 0.68 +0.4
Or see this region's nucleotide sequence