Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01385 and ABID97_RS01390 are separated by 2 nucleotides ABID97_RS01390 and ABID97_RS01395 are separated by 12 nucleotides ABID97_RS01395 and ABID97_RS01400 are separated by 7 nucleotides ABID97_RS01400 and ABID97_RS01405 are separated by 117 nucleotides
ABID97_RS01385: ABID97_RS01385 - thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha, at 280,497 to 281,522
_RS01385
ABID97_RS01390: ABID97_RS01390 - transketolase C-terminal domain-containing protein, at 281,525 to 282,481
_RS01390
ABID97_RS01395: ABID97_RS01395 - MarR family transcriptional regulator, at 282,494 to 282,916
_RS01395
ABID97_RS01400: ABID97_RS01400 - SDR family oxidoreductase, at 282,924 to 283,685
_RS01400
ABID97_RS01405: ABID97_RS01405 - LysR family transcriptional regulator, at 283,803 to 284,729
_RS01405
Position (kb) 282
283 Strain fitness (log2 ratio) -1
0
1 at 281.540 kb on + strand at 281.541 kb on - strand at 281.642 kb on + strand, within ABID97_RS01390 at 281.984 kb on + strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 281.985 kb on - strand, within ABID97_RS01390 at 282.029 kb on + strand, within ABID97_RS01390 at 282.405 kb on - strand at 282.761 kb on + strand, within ABID97_RS01395 at 282.762 kb on - strand, within ABID97_RS01395 at 283.201 kb on + strand, within ABID97_RS01400 at 283.555 kb on + strand, within ABID97_RS01400 at 283.556 kb on - strand, within ABID97_RS01400 at 283.556 kb on - strand, within ABID97_RS01400
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 281,540 + +0.8 281,541 - +0.1 281,642 + ABID97_RS01390 0.12 +0.2 281,984 + ABID97_RS01390 0.48 +1.4 281,985 - ABID97_RS01390 0.48 +0.4 281,985 - ABID97_RS01390 0.48 -0.0 281,985 - ABID97_RS01390 0.48 +0.1 281,985 - ABID97_RS01390 0.48 +0.7 281,985 - ABID97_RS01390 0.48 +0.2 282,029 + ABID97_RS01390 0.53 +0.7 282,405 - +0.5 282,761 + ABID97_RS01395 0.63 +0.1 282,762 - ABID97_RS01395 0.63 -0.2 283,201 + ABID97_RS01400 0.36 -0.3 283,555 + ABID97_RS01400 0.83 -0.1 283,556 - ABID97_RS01400 0.83 +0.7 283,556 - ABID97_RS01400 0.83 -0.6
Or see this region's nucleotide sequence