Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01325 and ABID97_RS01330 overlap by 28 nucleotides ABID97_RS01330 and ABID97_RS01335 are separated by 51 nucleotides ABID97_RS01335 and ABID97_RS01340 are separated by 23 nucleotides ABID97_RS01340 and ABID97_RS01345 are separated by 47 nucleotides
ABID97_RS01325: ABID97_RS01325 - branched-chain amino acid ABC transporter permease, at 269,365 to 270,219
_RS01325
ABID97_RS01330: ABID97_RS01330 - branched-chain amino acid ABC transporter permease, at 270,192 to 271,130
_RS01330
ABID97_RS01335: ABID97_RS01335 - flavin-dependent oxidoreductase, at 271,182 to 272,456
_RS01335
ABID97_RS01340: ABID97_RS01340 - RidA family protein, at 272,480 to 273,049
_RS01340
ABID97_RS01345: ABID97_RS01345 - coniferyl-alcohol dehydrogenase, at 273,097 to 273,900
_RS01345
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.361 kb on + strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.362 kb on - strand, within ABID97_RS01330 at 270.856 kb on + strand, within ABID97_RS01330 at 270.857 kb on - strand, within ABID97_RS01330 at 270.857 kb on - strand, within ABID97_RS01330 at 270.896 kb on - strand, within ABID97_RS01330 at 271.078 kb on + strand at 271.079 kb on - strand at 271.939 kb on + strand, within ABID97_RS01335 at 272.449 kb on - strand at 272.589 kb on + strand, within ABID97_RS01340 at 272.590 kb on - strand, within ABID97_RS01340 at 272.664 kb on + strand, within ABID97_RS01340 at 272.767 kb on - strand, within ABID97_RS01340 at 273.318 kb on - strand, within ABID97_RS01345 at 273.419 kb on + strand, within ABID97_RS01345 at 273.420 kb on - strand, within ABID97_RS01345
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 270,361 + ABID97_RS01330 0.18 -1.7 270,362 - ABID97_RS01330 0.18 +0.4 270,362 - ABID97_RS01330 0.18 +0.1 270,856 + ABID97_RS01330 0.71 -0.1 270,857 - ABID97_RS01330 0.71 +2.1 270,857 - ABID97_RS01330 0.71 -0.1 270,896 - ABID97_RS01330 0.75 -0.4 271,078 + +0.2 271,079 - -0.3 271,939 + ABID97_RS01335 0.59 -1.2 272,449 - +0.2 272,589 + ABID97_RS01340 0.19 -1.8 272,590 - ABID97_RS01340 0.19 +0.1 272,664 + ABID97_RS01340 0.32 +0.3 272,767 - ABID97_RS01340 0.50 -1.3 273,318 - ABID97_RS01345 0.27 +0.3 273,419 + ABID97_RS01345 0.40 +0.3 273,420 - ABID97_RS01345 0.40 +0.2
Or see this region's nucleotide sequence