Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01170 and ABID97_RS01175 are separated by 9 nucleotides ABID97_RS01175 and ABID97_RS01180 are separated by 192 nucleotides ABID97_RS01180 and ABID97_RS01185 are separated by 35 nucleotides
ABID97_RS01170: ABID97_RS01170 - ABC transporter permease, at 240,502 to 241,692
_RS01170
ABID97_RS01175: ABID97_RS01175 - D-xylose ABC transporter substrate-binding protein, at 241,702 to 242,724
_RS01175
ABID97_RS01180: ABID97_RS01180 - hypothetical protein, at 242,917 to 243,255
_RS01180
ABID97_RS01185: ABID97_RS01185 - NAD(P)-dependent oxidoreductase, at 243,291 to 244,193
_RS01185
Position (kb) 241
242
243 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 240.719 kb on + strand, within ABID97_RS01170 at 240.719 kb on + strand, within ABID97_RS01170 at 240.719 kb on + strand, within ABID97_RS01170 at 240.719 kb on + strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.720 kb on - strand, within ABID97_RS01170 at 240.846 kb on + strand at 241.349 kb on + strand, within ABID97_RS01170 at 241.350 kb on - strand, within ABID97_RS01170 at 241.350 kb on - strand, within ABID97_RS01170 at 241.427 kb on + strand, within ABID97_RS01170 at 241.553 kb on + strand, within ABID97_RS01170 at 241.704 kb on - strand at 242.175 kb on - strand, within ABID97_RS01175 at 242.291 kb on + strand, within ABID97_RS01175 at 242.291 kb on + strand, within ABID97_RS01175 at 242.291 kb on + strand, within ABID97_RS01175 at 242.292 kb on - strand, within ABID97_RS01175 at 242.292 kb on - strand, within ABID97_RS01175 at 242.292 kb on - strand, within ABID97_RS01175 at 242.367 kb on - strand, within ABID97_RS01175 at 242.367 kb on - strand, within ABID97_RS01175 at 242.561 kb on + strand, within ABID97_RS01175 at 242.737 kb on + strand at 242.767 kb on + strand at 242.796 kb on + strand at 242.796 kb on + strand at 242.796 kb on + strand at 242.797 kb on - strand at 242.797 kb on - strand at 243.694 kb on + strand, within ABID97_RS01185
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 240,719 + ABID97_RS01170 0.18 +3.5 240,719 + ABID97_RS01170 0.18 +3.7 240,719 + ABID97_RS01170 0.18 +3.5 240,719 + ABID97_RS01170 0.18 +2.2 240,720 - ABID97_RS01170 0.18 +3.5 240,720 - ABID97_RS01170 0.18 +3.2 240,720 - ABID97_RS01170 0.18 +3.8 240,720 - ABID97_RS01170 0.18 +2.6 240,720 - ABID97_RS01170 0.18 +3.1 240,846 + +4.7 241,349 + ABID97_RS01170 0.71 +0.8 241,350 - ABID97_RS01170 0.71 +3.1 241,350 - ABID97_RS01170 0.71 +2.9 241,427 + ABID97_RS01170 0.78 +3.1 241,553 + ABID97_RS01170 0.88 +2.8 241,704 - +3.8 242,175 - ABID97_RS01175 0.46 +1.6 242,291 + ABID97_RS01175 0.58 +3.0 242,291 + ABID97_RS01175 0.58 +3.3 242,291 + ABID97_RS01175 0.58 +3.5 242,292 - ABID97_RS01175 0.58 +3.5 242,292 - ABID97_RS01175 0.58 +4.1 242,292 - ABID97_RS01175 0.58 +3.4 242,367 - ABID97_RS01175 0.65 +3.2 242,367 - ABID97_RS01175 0.65 +3.6 242,561 + ABID97_RS01175 0.84 +3.3 242,737 + +3.0 242,767 + +3.7 242,796 + +2.7 242,796 + +2.1 242,796 + +2.7 242,797 - -3.6 242,797 - +1.1 243,694 + ABID97_RS01185 0.45 -0.4
Or see this region's nucleotide sequence