Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01155 and ABID97_RS01160 are separated by 142 nucleotides ABID97_RS01160 and ABID97_RS01165 are separated by 40 nucleotides ABID97_RS01165 and ABID97_RS01170 are separated by 1 nucleotides
ABID97_RS01155: ABID97_RS01155 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 235,936 to 238,380
_RS01155
ABID97_RS01160: ABID97_RS01160 - ROK family transcriptional regulator, at 238,523 to 239,683
_RS01160
ABID97_RS01165: ABID97_RS01165 - ATP-binding cassette domain-containing protein, at 239,724 to 240,500
_RS01165
ABID97_RS01170: ABID97_RS01170 - ABC transporter permease, at 240,502 to 241,692
_RS01170
Position (kb) 238
239
240 Strain fitness (log2 ratio) -1
0
1
2
3 at 237.527 kb on + strand, within ABID97_RS01155 at 237.527 kb on + strand, within ABID97_RS01155 at 237.527 kb on + strand, within ABID97_RS01155 at 237.588 kb on - strand, within ABID97_RS01155 at 237.801 kb on - strand, within ABID97_RS01155 at 237.828 kb on - strand, within ABID97_RS01155 at 238.169 kb on + strand at 238.244 kb on + strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.245 kb on - strand at 238.248 kb on - strand at 238.248 kb on - strand at 238.438 kb on - strand at 238.438 kb on - strand at 238.599 kb on + strand at 238.599 kb on + strand at 239.071 kb on - strand, within ABID97_RS01160 at 239.879 kb on + strand, within ABID97_RS01165 at 240.229 kb on + strand, within ABID97_RS01165 at 240.230 kb on - strand, within ABID97_RS01165 at 240.230 kb on - strand, within ABID97_RS01165 at 240.323 kb on - strand, within ABID97_RS01165
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 237,527 + ABID97_RS01155 0.65 +1.2 237,527 + ABID97_RS01155 0.65 -1.1 237,527 + ABID97_RS01155 0.65 -1.2 237,588 - ABID97_RS01155 0.68 +1.2 237,801 - ABID97_RS01155 0.76 +0.2 237,828 - ABID97_RS01155 0.77 -0.1 238,169 + +0.6 238,244 + +0.7 238,245 - -0.7 238,245 - +0.2 238,245 - -0.6 238,245 - -0.0 238,245 - -1.4 238,248 - +1.9 238,248 - -0.3 238,438 - +1.0 238,438 - +0.0 238,599 + -0.5 238,599 + -0.5 239,071 - ABID97_RS01160 0.47 -0.9 239,879 + ABID97_RS01165 0.20 +3.6 240,229 + ABID97_RS01165 0.65 +3.3 240,230 - ABID97_RS01165 0.65 +3.4 240,230 - ABID97_RS01165 0.65 +3.3 240,323 - ABID97_RS01165 0.77 +3.6
Or see this region's nucleotide sequence