Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01145 and ABID97_RS01150 are separated by 160 nucleotides ABID97_RS01150 and ABID97_RS01155 are separated by 7 nucleotides
ABID97_RS01145: ABID97_RS01145 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 232,382 to 234,502
_RS01145
ABID97_RS01150: ABID97_RS01150 - helix-turn-helix domain-containing protein, at 234,663 to 235,928
_RS01150
ABID97_RS01155: ABID97_RS01155 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 235,936 to 238,380
_RS01155
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 233.923 kb on - strand, within ABID97_RS01145 at 233.923 kb on - strand, within ABID97_RS01145 at 233.923 kb on - strand, within ABID97_RS01145 at 234.018 kb on + strand, within ABID97_RS01145 at 234.019 kb on - strand, within ABID97_RS01145 at 234.171 kb on + strand, within ABID97_RS01145 at 234.171 kb on + strand, within ABID97_RS01145 at 234.172 kb on - strand, within ABID97_RS01145 at 234.231 kb on + strand, within ABID97_RS01145 at 234.318 kb on + strand at 234.318 kb on + strand at 234.319 kb on - strand at 234.319 kb on - strand at 235.164 kb on + strand, within ABID97_RS01150 at 235.164 kb on + strand, within ABID97_RS01150 at 235.299 kb on + strand, within ABID97_RS01150 at 235.300 kb on - strand, within ABID97_RS01150 at 235.300 kb on - strand, within ABID97_RS01150 at 236.021 kb on + strand at 236.021 kb on + strand at 236.022 kb on - strand at 236.117 kb on + strand at 236.118 kb on - strand at 236.301 kb on - strand, within ABID97_RS01155 at 236.301 kb on - strand, within ABID97_RS01155 at 236.432 kb on + strand, within ABID97_RS01155 at 236.909 kb on + strand, within ABID97_RS01155 at 236.909 kb on + strand, within ABID97_RS01155
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 233,923 - ABID97_RS01145 0.73 +0.2 233,923 - ABID97_RS01145 0.73 +0.6 233,923 - ABID97_RS01145 0.73 -0.4 234,018 + ABID97_RS01145 0.77 +0.1 234,019 - ABID97_RS01145 0.77 +0.4 234,171 + ABID97_RS01145 0.84 -0.8 234,171 + ABID97_RS01145 0.84 -0.4 234,172 - ABID97_RS01145 0.84 -1.2 234,231 + ABID97_RS01145 0.87 +0.2 234,318 + -0.5 234,318 + -0.5 234,319 - -0.2 234,319 - +0.8 235,164 + ABID97_RS01150 0.40 -0.8 235,164 + ABID97_RS01150 0.40 -0.4 235,299 + ABID97_RS01150 0.50 -0.8 235,300 - ABID97_RS01150 0.50 +0.4 235,300 - ABID97_RS01150 0.50 +0.2 236,021 + +0.7 236,021 + +0.4 236,022 - +0.2 236,117 + -2.3 236,118 - -0.0 236,301 - ABID97_RS01155 0.15 +0.7 236,301 - ABID97_RS01155 0.15 +0.1 236,432 + ABID97_RS01155 0.20 -0.1 236,909 + ABID97_RS01155 0.40 +0.5 236,909 + ABID97_RS01155 0.40 +1.7
Or see this region's nucleotide sequence