Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00950 and ABID97_RS00955 are separated by 268 nucleotides ABID97_RS00955 and ABID97_RS00960 are separated by 19 nucleotides ABID97_RS00960 and ABID97_RS00965 are separated by 134 nucleotides
ABID97_RS00950: ABID97_RS00950 - ABC transporter substrate-binding protein, at 192,142 to 193,188
_RS00950
ABID97_RS00955: ABID97_RS00955 - aquaporin Z, at 193,457 to 194,167
_RS00955
ABID97_RS00960: ABID97_RS00960 - hypothetical protein, at 194,187 to 194,525
_RS00960
ABID97_RS00965: ABID97_RS00965 - ATP-binding protein, at 194,660 to 196,048
_RS00965
Position (kb) 194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 193.396 kb on + strand at 193.396 kb on + strand at 193.397 kb on - strand at 193.397 kb on - strand at 193.397 kb on - strand at 193.472 kb on + strand at 193.472 kb on + strand at 193.473 kb on - strand at 193.473 kb on - strand at 193.626 kb on - strand, within ABID97_RS00955 at 193.770 kb on - strand, within ABID97_RS00955 at 193.827 kb on - strand, within ABID97_RS00955 at 193.851 kb on - strand, within ABID97_RS00955 at 194.132 kb on + strand at 194.269 kb on + strand, within ABID97_RS00960 at 194.269 kb on + strand, within ABID97_RS00960 at 194.269 kb on + strand, within ABID97_RS00960 at 194.270 kb on - strand, within ABID97_RS00960 at 194.425 kb on + strand, within ABID97_RS00960
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 193,396 + +0.6 193,396 + -0.5 193,397 - -1.3 193,397 - +0.1 193,397 - +0.7 193,472 + +0.5 193,472 + +0.4 193,473 - -1.3 193,473 - -1.7 193,626 - ABID97_RS00955 0.24 +1.7 193,770 - ABID97_RS00955 0.44 -0.5 193,827 - ABID97_RS00955 0.52 -1.0 193,851 - ABID97_RS00955 0.55 -0.3 194,132 + -1.3 194,269 + ABID97_RS00960 0.24 -0.4 194,269 + ABID97_RS00960 0.24 +0.2 194,269 + ABID97_RS00960 0.24 -0.7 194,270 - ABID97_RS00960 0.24 -2.8 194,425 + ABID97_RS00960 0.70 +0.3
Or see this region's nucleotide sequence