Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00435 and ABID97_RS00440 overlap by 4 nucleotides ABID97_RS00440 and ABID97_RS00445 are separated by 240 nucleotides ABID97_RS00445 and ABID97_RS00450 are separated by 129 nucleotides
ABID97_RS00435: ABID97_RS00435 - sugar ABC transporter ATP-binding protein, at 97,155 to 98,693
_RS00435
ABID97_RS00440: ABID97_RS00440 - ROK family protein, at 98,690 to 99,859
_RS00440
ABID97_RS00445: ABID97_RS00445 - F0F1 ATP synthase subunit epsilon, at 100,100 to 100,519
_RS00445
ABID97_RS00450: ABID97_RS00450 - F0F1 ATP synthase subunit beta, at 100,649 to 102,064
_RS00450
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 98.086 kb on + strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.086 kb on + strand, within ABID97_RS00435 at 98.087 kb on - strand, within ABID97_RS00435 at 98.087 kb on - strand, within ABID97_RS00435 at 98.573 kb on - strand at 98.778 kb on + strand at 98.779 kb on - strand at 98.824 kb on - strand, within ABID97_RS00440 at 99.213 kb on + strand, within ABID97_RS00440 at 99.213 kb on + strand, within ABID97_RS00440 at 99.214 kb on - strand, within ABID97_RS00440 at 99.214 kb on - strand, within ABID97_RS00440 at 99.373 kb on - strand, within ABID97_RS00440 at 99.909 kb on - strand at 99.941 kb on + strand at 99.960 kb on + strand at 99.960 kb on + strand at 99.961 kb on - strand at 99.961 kb on - strand at 99.961 kb on - strand at 99.963 kb on + strand at 99.963 kb on + strand at 99.963 kb on + strand at 99.964 kb on - strand at 99.964 kb on - strand at 99.964 kb on - strand at 99.964 kb on - strand at 99.964 kb on - strand at 99.964 kb on - strand at 99.964 kb on - strand at 100.101 kb on + strand at 100.101 kb on + strand at 100.102 kb on - strand at 100.102 kb on - strand at 100.102 kb on - strand at 100.116 kb on + strand at 100.117 kb on - strand at 100.117 kb on - strand at 100.540 kb on - strand at 100.606 kb on - strand at 100.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 98,086 + ABID97_RS00435 0.60 -0.3 98,086 + ABID97_RS00435 0.60 -0.1 98,086 + ABID97_RS00435 0.60 +0.2 98,086 + ABID97_RS00435 0.60 -0.0 98,087 - ABID97_RS00435 0.61 +0.4 98,087 - ABID97_RS00435 0.61 +0.9 98,573 - -0.4 98,778 + +1.3 98,779 - -2.8 98,824 - ABID97_RS00440 0.11 -0.0 99,213 + ABID97_RS00440 0.45 -1.4 99,213 + ABID97_RS00440 0.45 -1.9 99,214 - ABID97_RS00440 0.45 -0.8 99,214 - ABID97_RS00440 0.45 +2.2 99,373 - ABID97_RS00440 0.58 -1.1 99,909 - -0.7 99,941 + -0.3 99,960 + -0.1 99,960 + +0.6 99,961 - -0.4 99,961 - +0.5 99,961 - -0.7 99,963 + -1.5 99,963 + -1.7 99,963 + -2.0 99,964 - -1.5 99,964 - -0.7 99,964 - -1.6 99,964 - -1.0 99,964 - -1.9 99,964 - -2.4 99,964 - -2.7 100,101 + +0.0 100,101 + -0.4 100,102 - +0.3 100,102 - -0.9 100,102 - -0.3 100,116 + +0.8 100,117 - +0.8 100,117 - +0.6 100,540 - +0.2 100,606 - +0.3 100,651 - -2.5
Or see this region's nucleotide sequence