Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00345

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00335 and ABID97_RS00340 are separated by 70 nucleotidesABID97_RS00340 and ABID97_RS00345 are separated by 5 nucleotidesABID97_RS00345 and ABID97_RS00350 are separated by 21 nucleotidesABID97_RS00350 and ABID97_RS00355 are separated by 46 nucleotides ABID97_RS00335: ABID97_RS00335 - c-type cytochrome, at 77,401 to 78,027 _RS00335 ABID97_RS00340: ABID97_RS00340 - DUF2946 family protein, at 78,098 to 78,646 _RS00340 ABID97_RS00345: ABID97_RS00345 - alpha/beta fold hydrolase, at 78,652 to 79,662 _RS00345 ABID97_RS00350: ABID97_RS00350 - nuclear transport factor 2 family protein, at 79,684 to 80,136 _RS00350 ABID97_RS00355: ABID97_RS00355 - hypothetical protein, at 80,183 to 80,959 _RS00355 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1at 77.800 kb on + strand, within ABID97_RS00335at 77.899 kb on + strand, within ABID97_RS00335at 77.899 kb on + strand, within ABID97_RS00335at 77.900 kb on - strand, within ABID97_RS00335at 78.025 kb on + strandat 78.025 kb on + strandat 78.025 kb on + strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.108 kb on - strandat 78.273 kb on + strand, within ABID97_RS00340at 78.273 kb on + strand, within ABID97_RS00340at 78.274 kb on - strand, within ABID97_RS00340at 78.274 kb on - strand, within ABID97_RS00340at 78.402 kb on + strand, within ABID97_RS00340at 78.402 kb on + strand, within ABID97_RS00340at 78.403 kb on - strand, within ABID97_RS00340at 78.403 kb on - strand, within ABID97_RS00340at 78.403 kb on - strand, within ABID97_RS00340at 78.456 kb on + strand, within ABID97_RS00340at 78.456 kb on + strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.591 kb on + strand, within ABID97_RS00340at 78.653 kb on + strandat 78.654 kb on - strandat 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 79.088 kb on + strand, within ABID97_RS00345at 79.089 kb on - strand, within ABID97_RS00345at 79.334 kb on + strand, within ABID97_RS00345at 79.334 kb on + strand, within ABID97_RS00345at 79.335 kb on - strand, within ABID97_RS00345at 79.436 kb on + strand, within ABID97_RS00345at 79.436 kb on + strand, within ABID97_RS00345at 79.436 kb on + strand, within ABID97_RS00345at 79.436 kb on + strand, within ABID97_RS00345at 79.437 kb on - strand, within ABID97_RS00345at 79.437 kb on - strand, within ABID97_RS00345at 79.437 kb on - strand, within ABID97_RS00345at 79.437 kb on - strand, within ABID97_RS00345at 79.598 kb on + strandat 79.598 kb on + strandat 79.598 kb on + strandat 79.598 kb on + strandat 79.787 kb on + strand, within ABID97_RS00350at 79.787 kb on + strand, within ABID97_RS00350at 79.787 kb on + strand, within ABID97_RS00350at 79.787 kb on + strand, within ABID97_RS00350at 79.788 kb on - strand, within ABID97_RS00350at 80.066 kb on + strand, within ABID97_RS00350at 80.066 kb on + strand, within ABID97_RS00350at 80.066 kb on + strand, within ABID97_RS00350at 80.066 kb on + strand, within ABID97_RS00350at 80.066 kb on + strand, within ABID97_RS00350at 80.066 kb on + strand, within ABID97_RS00350at 80.067 kb on - strand, within ABID97_RS00350at 80.067 kb on - strand, within ABID97_RS00350at 80.067 kb on - strand, within ABID97_RS00350at 80.067 kb on - strand, within ABID97_RS00350at 80.067 kb on - strand, within ABID97_RS00350at 80.067 kb on - strand, within ABID97_RS00350at 80.658 kb on + strand, within ABID97_RS00355

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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77,800 + ABID97_RS00335 0.64 -0.7
77,899 + ABID97_RS00335 0.79 -0.9
77,899 + ABID97_RS00335 0.79 -0.6
77,900 - ABID97_RS00335 0.80 -0.8
78,025 + -0.6
78,025 + -0.5
78,025 + -1.3
78,026 - +0.5
78,026 - -0.4
78,026 - -0.9
78,026 - -0.7
78,108 - +0.6
78,273 + ABID97_RS00340 0.32 -1.1
78,273 + ABID97_RS00340 0.32 -1.5
78,274 - ABID97_RS00340 0.32 -0.3
78,274 - ABID97_RS00340 0.32 -1.0
78,402 + ABID97_RS00340 0.55 -1.4
78,402 + ABID97_RS00340 0.55 -0.1
78,403 - ABID97_RS00340 0.56 -1.7
78,403 - ABID97_RS00340 0.56 -1.0
78,403 - ABID97_RS00340 0.56 -0.2
78,456 + ABID97_RS00340 0.65 +0.5
78,456 + ABID97_RS00340 0.65 +0.0
78,457 - ABID97_RS00340 0.65 +0.8
78,457 - ABID97_RS00340 0.65 -1.0
78,457 - ABID97_RS00340 0.65 -0.9
78,457 - ABID97_RS00340 0.65 -0.8
78,457 - ABID97_RS00340 0.65 +0.2
78,556 - ABID97_RS00340 0.83 -2.1
78,556 - ABID97_RS00340 0.83 -0.8
78,556 - ABID97_RS00340 0.83 -2.2
78,556 - ABID97_RS00340 0.83 -0.9
78,591 + ABID97_RS00340 0.90 -0.6
78,653 + -0.4
78,654 - -0.3
78,983 + ABID97_RS00345 0.33 -1.3
78,983 + ABID97_RS00345 0.33 +0.8
78,983 + ABID97_RS00345 0.33 -0.4
78,983 + ABID97_RS00345 0.33 -0.4
78,983 + ABID97_RS00345 0.33 -0.6
78,984 - ABID97_RS00345 0.33 +0.5
78,984 - ABID97_RS00345 0.33 -0.6
78,984 - ABID97_RS00345 0.33 -0.4
78,984 - ABID97_RS00345 0.33 +0.2
78,984 - ABID97_RS00345 0.33 -1.0
78,984 - ABID97_RS00345 0.33 +0.1
79,088 + ABID97_RS00345 0.43 +0.3
79,089 - ABID97_RS00345 0.43 +0.2
79,334 + ABID97_RS00345 0.67 +0.1
79,334 + ABID97_RS00345 0.67 +0.2
79,335 - ABID97_RS00345 0.68 +0.0
79,436 + ABID97_RS00345 0.78 -0.3
79,436 + ABID97_RS00345 0.78 +0.3
79,436 + ABID97_RS00345 0.78 -0.2
79,436 + ABID97_RS00345 0.78 -0.2
79,437 - ABID97_RS00345 0.78 +1.5
79,437 - ABID97_RS00345 0.78 +0.2
79,437 - ABID97_RS00345 0.78 -0.6
79,437 - ABID97_RS00345 0.78 -1.4
79,598 + -1.0
79,598 + -0.3
79,598 + +0.8
79,598 + +0.5
79,787 + ABID97_RS00350 0.23 +0.2
79,787 + ABID97_RS00350 0.23 +1.6
79,787 + ABID97_RS00350 0.23 +0.3
79,787 + ABID97_RS00350 0.23 +0.4
79,788 - ABID97_RS00350 0.23 -0.0
80,066 + ABID97_RS00350 0.84 +0.9
80,066 + ABID97_RS00350 0.84 -0.4
80,066 + ABID97_RS00350 0.84 +0.1
80,066 + ABID97_RS00350 0.84 +0.0
80,066 + ABID97_RS00350 0.84 -0.1
80,066 + ABID97_RS00350 0.84 -0.3
80,067 - ABID97_RS00350 0.85 +0.3
80,067 - ABID97_RS00350 0.85 +0.3
80,067 - ABID97_RS00350 0.85 +0.2
80,067 - ABID97_RS00350 0.85 -0.1
80,067 - ABID97_RS00350 0.85 -0.7
80,067 - ABID97_RS00350 0.85 +0.2
80,658 + ABID97_RS00355 0.61 +0.6

Or see this region's nucleotide sequence