Strain Fitness in Escherichia coli BW25113 around b3640
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,812,407 | + | -0.9 | |||
3,812,413 | - | +0.2 | |||
3,812,413 | - | -1.4 | |||
3,812,424 | + | -0.7 | |||
3,812,567 | + | -1.4 | |||
3,812,567 | + | +0.0 | |||
3,812,604 | - | ttk | b3641 | 0.15 | +0.2 |
3,812,662 | + | ttk | b3641 | 0.24 | -0.7 |
3,812,662 | + | ttk | b3641 | 0.24 | +0.0 |
3,812,700 | - | ttk | b3641 | 0.31 | -1.2 |
3,812,700 | - | ttk | b3641 | 0.31 | -1.4 |
3,812,759 | + | ttk | b3641 | 0.41 | +0.0 |
3,812,759 | + | ttk | b3641 | 0.41 | +1.4 |
3,812,816 | + | ttk | b3641 | 0.50 | -0.4 |
3,812,821 | + | ttk | b3641 | 0.51 | -0.7 |
3,812,824 | - | ttk | b3641 | 0.51 | -1.7 |
3,812,860 | + | +2.2 | |||
3,812,873 | - | ttk | b3641 | 0.60 | -0.9 |
3,812,883 | - | ttk | b3641 | 0.61 | -1.8 |
3,812,883 | - | ttk | b3641 | 0.61 | -0.6 |
3,812,957 | + | ttk | b3641 | 0.74 | -0.8 |
3,812,963 | + | ttk | b3641 | 0.75 | +0.0 |
3,812,963 | + | ttk | b3641 | 0.75 | +1.2 |
3,812,971 | - | ttk | b3641 | 0.76 | -0.3 |
3,812,984 | - | ttk | b3641 | 0.78 | -0.8 |
3,812,984 | - | ttk | b3641 | 0.78 | -0.9 |
3,813,018 | + | ttk | b3641 | 0.84 | -1.4 |
3,813,018 | + | ttk | b3641 | 0.84 | +0.6 |
3,813,018 | + | ttk | b3641 | 0.84 | -1.5 |
3,813,054 | - | -1.8 | |||
3,813,168 | + | -0.1 | |||
3,813,172 | - | -0.8 | |||
3,813,175 | + | -1.0 | |||
3,813,183 | - | +0.7 | |||
3,813,183 | - | -0.1 | |||
3,813,183 | - | -0.6 | |||
3,813,236 | + | pyrE | b3642 | 0.13 | +0.6 |
3,813,305 | + | pyrE | b3642 | 0.24 | -0.4 |
3,813,320 | + | pyrE | b3642 | 0.26 | +1.0 |
3,813,328 | - | pyrE | b3642 | 0.28 | -0.4 |
Or see this region's nucleotide sequence