Strain Fitness in Escherichia coli BW25113 around b2496

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfgC and yfgD are separated by 20 nucleotidesyfgD and hda are separated by 137 nucleotideshda and uraA are separated by 94 nucleotides b2494: yfgC - predicted peptidase (NCBI), at 2,614,116 to 2,615,579 yfgC b2495: yfgD - predicted oxidoreductase (NCBI), at 2,615,600 to 2,615,959 yfgD b2496: hda - ATPase regulatory factor involved in DnaA inactivation (RefSeq), at 2,616,097 to 2,616,798 hda b2497: uraA - uracil transporter (NCBI), at 2,616,893 to 2,618,182 uraA Position (kb) 2616 2617Strain fitness (log2 ratio) -1 0 1at 2615.356 kb on - strand, within yfgCat 2615.392 kb on - strand, within yfgCat 2615.403 kb on - strand, within yfgCat 2615.463 kb on - strandat 2615.463 kb on - strandat 2615.470 kb on + strandat 2615.470 kb on - strandat 2615.470 kb on - strandat 2615.719 kb on - strand, within yfgDat 2615.756 kb on + strand, within yfgDat 2615.766 kb on - strand, within yfgDat 2615.766 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.826 kb on - strand, within yfgDat 2615.857 kb on - strand, within yfgDat 2615.857 kb on - strand, within yfgDat 2615.898 kb on - strand, within yfgDat 2615.953 kb on - strandat 2615.966 kb on - strandat 2616.025 kb on + strandat 2616.867 kb on + strandat 2616.867 kb on + strandat 2616.869 kb on + strandat 2616.955 kb on - strandat 2616.955 kb on - strandat 2617.019 kb on - strandat 2617.096 kb on - strand, within uraAat 2617.336 kb on - strand, within uraAat 2617.346 kb on - strand, within uraAat 2617.391 kb on + strand, within uraAat 2617.399 kb on - strand, within uraAat 2617.399 kb on - strand, within uraAat 2617.404 kb on - strand, within uraAat 2617.436 kb on - strand, within uraAat 2617.492 kb on - strand, within uraAat 2617.572 kb on + strand, within uraAat 2617.675 kb on - strand, within uraAat 2617.675 kb on - strand, within uraAat 2617.690 kb on + strand, within uraAat 2617.695 kb on + strand, within uraA

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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2,615,356 - yfgC b2494 0.85 -0.5
2,615,392 - yfgC b2494 0.87 -0.5
2,615,403 - yfgC b2494 0.88 +1.0
2,615,463 - +0.4
2,615,463 - +0.4
2,615,470 + -0.7
2,615,470 - -1.7
2,615,470 - +1.0
2,615,719 - yfgD b2495 0.33 -1.4
2,615,756 + yfgD b2495 0.43 +0.5
2,615,766 - yfgD b2495 0.46 -0.5
2,615,766 - yfgD b2495 0.46 +0.0
2,615,826 - yfgD b2495 0.63 +1.0
2,615,826 - yfgD b2495 0.63 +0.7
2,615,826 - yfgD b2495 0.63 -0.2
2,615,826 - yfgD b2495 0.63 -0.5
2,615,857 - yfgD b2495 0.71 +0.3
2,615,857 - yfgD b2495 0.71 -0.6
2,615,898 - yfgD b2495 0.83 -0.6
2,615,953 - +0.2
2,615,966 - +0.2
2,616,025 + -1.6
2,616,867 + +0.5
2,616,867 + -0.1
2,616,869 + +0.2
2,616,955 - +0.3
2,616,955 - -0.9
2,617,019 - +0.7
2,617,096 - uraA b2497 0.16 +0.1
2,617,336 - uraA b2497 0.34 -0.2
2,617,346 - uraA b2497 0.35 +1.3
2,617,391 + uraA b2497 0.39 +1.0
2,617,399 - uraA b2497 0.39 -0.3
2,617,399 - uraA b2497 0.39 -1.3
2,617,404 - uraA b2497 0.40 +0.3
2,617,436 - uraA b2497 0.42 -0.1
2,617,492 - uraA b2497 0.46 +1.3
2,617,572 + uraA b2497 0.53 -0.5
2,617,675 - uraA b2497 0.61 -0.6
2,617,675 - uraA b2497 0.61 +0.2
2,617,690 + uraA b2497 0.62 -0.7
2,617,695 + uraA b2497 0.62 -1.1

Or see this region's nucleotide sequence