Strain Fitness in Escherichia coli BW25113 around b1808

Experiment: Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaY and yeaZ are separated by 39 nucleotidesyeaZ and yoaA are separated by 57 nucleotidesyoaA and b1809 are separated by 131 nucleotidesb1809 and yoaC are separated by 421 nucleotides b1806: yeaY - predicted lipoprotein (NCBI), at 1,887,975 to 1,888,556 yeaY b1807: yeaZ - predicted peptidase (NCBI), at 1,888,596 to 1,889,291 yeaZ b1808: yoaA - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 1,889,349 to 1,891,259 yoaA b1809: b1809 - orf, hypothetical protein (VIMSS), at 1,891,391 to 1,891,735 b1809 b1810: yoaC - predicted protein (RefSeq), at 1,892,157 to 1,892,456 yoaC Position (kb) 1889 1890 1891 1892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1888.428 kb on - strand, within yeaYat 1888.428 kb on - strand, within yeaYat 1888.463 kb on + strand, within yeaYat 1888.586 kb on + strandat 1888.586 kb on + strandat 1889.333 kb on - strandat 1889.364 kb on - strandat 1889.751 kb on + strand, within yoaAat 1889.811 kb on - strand, within yoaAat 1889.917 kb on + strand, within yoaAat 1889.917 kb on + strand, within yoaAat 1890.135 kb on - strand, within yoaAat 1890.148 kb on - strand, within yoaAat 1890.187 kb on + strand, within yoaAat 1890.311 kb on + strand, within yoaAat 1890.503 kb on - strand, within yoaAat 1890.762 kb on - strand, within yoaAat 1890.858 kb on - strand, within yoaAat 1890.993 kb on + strand, within yoaAat 1891.001 kb on - strand, within yoaAat 1891.001 kb on - strand, within yoaAat 1891.023 kb on - strand, within yoaAat 1891.209 kb on + strandat 1891.209 kb on + strandat 1891.260 kb on + strandat 1891.403 kb on - strandat 1891.519 kb on + strand, within b1809at 1891.533 kb on - strand, within b1809at 1891.533 kb on - strand, within b1809at 1891.630 kb on + strand, within b1809at 1891.632 kb on + strand, within b1809at 1891.632 kb on + strand, within b1809at 1891.657 kb on - strand, within b1809at 1891.658 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.673 kb on + strand, within b1809at 1891.679 kb on - strand, within b1809at 1891.681 kb on - strand, within b1809at 1891.730 kb on + strandat 1891.730 kb on + strandat 1891.730 kb on + strandat 1891.737 kb on - strandat 1891.738 kb on - strandat 1891.750 kb on + strandat 1891.887 kb on + strandat 1891.887 kb on + strandat 1891.892 kb on + strandat 1891.892 kb on + strandat 1891.913 kb on - strandat 1891.932 kb on - strandat 1891.951 kb on + strandat 1891.959 kb on - strandat 1891.965 kb on + strandat 1891.981 kb on - strandat 1892.003 kb on + strandat 1892.008 kb on + strandat 1892.010 kb on + strandat 1892.016 kb on - strandat 1892.016 kb on - strandat 1892.032 kb on + strandat 1892.032 kb on + strandat 1892.046 kb on + strandat 1892.046 kb on + strandat 1892.102 kb on + strandat 1892.102 kb on + strandat 1892.153 kb on + strandat 1892.166 kb on + strandat 1892.178 kb on + strandat 1892.178 kb on + strandat 1892.196 kb on + strand, within yoaCat 1892.196 kb on + strand, within yoaCat 1892.199 kb on + strand, within yoaCat 1892.201 kb on + strand, within yoaCat 1892.226 kb on - strand, within yoaCat 1892.226 kb on - strand, within yoaCat 1892.230 kb on - strand, within yoaC

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.05 mg/ml
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1,888,428 - yeaY b1806 0.78 +0.1
1,888,428 - yeaY b1806 0.78 +0.8
1,888,463 + yeaY b1806 0.84 -0.5
1,888,586 + +0.1
1,888,586 + -0.5
1,889,333 - +0.8
1,889,364 - -1.0
1,889,751 + yoaA b1808 0.21 -0.4
1,889,811 - yoaA b1808 0.24 -0.3
1,889,917 + yoaA b1808 0.30 -0.2
1,889,917 + yoaA b1808 0.30 -0.2
1,890,135 - yoaA b1808 0.41 +0.7
1,890,148 - yoaA b1808 0.42 -0.4
1,890,187 + yoaA b1808 0.44 +0.5
1,890,311 + yoaA b1808 0.50 -1.8
1,890,503 - yoaA b1808 0.60 -0.8
1,890,762 - yoaA b1808 0.74 -1.8
1,890,858 - yoaA b1808 0.79 +0.1
1,890,993 + yoaA b1808 0.86 +0.1
1,891,001 - yoaA b1808 0.86 -0.7
1,891,001 - yoaA b1808 0.86 -0.5
1,891,023 - yoaA b1808 0.88 +0.5
1,891,209 + +0.8
1,891,209 + -1.2
1,891,260 + -0.9
1,891,403 - -1.1
1,891,519 + b1809 b1809 0.37 +1.3
1,891,533 - b1809 b1809 0.41 -0.4
1,891,533 - b1809 b1809 0.41 -0.1
1,891,630 + b1809 b1809 0.69 -0.3
1,891,632 + b1809 b1809 0.70 -0.3
1,891,632 + b1809 b1809 0.70 +0.6
1,891,657 - b1809 b1809 0.77 +1.1
1,891,658 + b1809 b1809 0.77 +0.2
1,891,673 + b1809 b1809 0.82 -0.0
1,891,673 + b1809 b1809 0.82 +1.4
1,891,673 + b1809 b1809 0.82 +0.5
1,891,673 + b1809 b1809 0.82 +0.5
1,891,673 + b1809 b1809 0.82 +0.7
1,891,673 + b1809 b1809 0.82 -0.6
1,891,673 + b1809 b1809 0.82 -0.5
1,891,679 - b1809 b1809 0.83 +0.1
1,891,681 - b1809 b1809 0.84 -1.1
1,891,730 + +0.8
1,891,730 + -0.5
1,891,730 + -0.4
1,891,737 - -2.5
1,891,738 - -2.8
1,891,750 + -0.2
1,891,887 + +0.1
1,891,887 + -0.7
1,891,892 + -0.8
1,891,892 + +0.5
1,891,913 - +1.5
1,891,932 - -0.6
1,891,951 + -0.3
1,891,959 - -0.4
1,891,965 + -0.2
1,891,981 - -0.7
1,892,003 + +0.2
1,892,008 + -0.4
1,892,010 + +0.1
1,892,016 - -1.3
1,892,016 - -0.5
1,892,032 + +1.1
1,892,032 + +0.8
1,892,046 + -1.7
1,892,046 + -1.1
1,892,102 + -0.2
1,892,102 + -0.2
1,892,153 + +0.4
1,892,166 + +0.5
1,892,178 + +0.5
1,892,178 + -0.7
1,892,196 + yoaC b1810 0.13 +0.5
1,892,196 + yoaC b1810 0.13 -0.7
1,892,199 + yoaC b1810 0.14 +0.2
1,892,201 + yoaC b1810 0.15 +1.9
1,892,226 - yoaC b1810 0.23 +0.5
1,892,226 - yoaC b1810 0.23 -1.1
1,892,230 - yoaC b1810 0.24 -1.2

Or see this region's nucleotide sequence