Strain Fitness in Escherichia coli BW25113 around b1808
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,888,428 | - | yeaY | b1806 | 0.78 | +0.1 |
1,888,428 | - | yeaY | b1806 | 0.78 | +0.8 |
1,888,463 | + | yeaY | b1806 | 0.84 | -0.5 |
1,888,586 | + | +0.1 | |||
1,888,586 | + | -0.5 | |||
1,889,333 | - | +0.8 | |||
1,889,364 | - | -1.0 | |||
1,889,751 | + | yoaA | b1808 | 0.21 | -0.4 |
1,889,811 | - | yoaA | b1808 | 0.24 | -0.3 |
1,889,917 | + | yoaA | b1808 | 0.30 | -0.2 |
1,889,917 | + | yoaA | b1808 | 0.30 | -0.2 |
1,890,135 | - | yoaA | b1808 | 0.41 | +0.7 |
1,890,148 | - | yoaA | b1808 | 0.42 | -0.4 |
1,890,187 | + | yoaA | b1808 | 0.44 | +0.5 |
1,890,311 | + | yoaA | b1808 | 0.50 | -1.8 |
1,890,503 | - | yoaA | b1808 | 0.60 | -0.8 |
1,890,762 | - | yoaA | b1808 | 0.74 | -1.8 |
1,890,858 | - | yoaA | b1808 | 0.79 | +0.1 |
1,890,993 | + | yoaA | b1808 | 0.86 | +0.1 |
1,891,001 | - | yoaA | b1808 | 0.86 | -0.7 |
1,891,001 | - | yoaA | b1808 | 0.86 | -0.5 |
1,891,023 | - | yoaA | b1808 | 0.88 | +0.5 |
1,891,209 | + | +0.8 | |||
1,891,209 | + | -1.2 | |||
1,891,260 | + | -0.9 | |||
1,891,403 | - | -1.1 | |||
1,891,519 | + | b1809 | b1809 | 0.37 | +1.3 |
1,891,533 | - | b1809 | b1809 | 0.41 | -0.4 |
1,891,533 | - | b1809 | b1809 | 0.41 | -0.1 |
1,891,630 | + | b1809 | b1809 | 0.69 | -0.3 |
1,891,632 | + | b1809 | b1809 | 0.70 | -0.3 |
1,891,632 | + | b1809 | b1809 | 0.70 | +0.6 |
1,891,657 | - | b1809 | b1809 | 0.77 | +1.1 |
1,891,658 | + | b1809 | b1809 | 0.77 | +0.2 |
1,891,673 | + | b1809 | b1809 | 0.82 | -0.0 |
1,891,673 | + | b1809 | b1809 | 0.82 | +1.4 |
1,891,673 | + | b1809 | b1809 | 0.82 | +0.5 |
1,891,673 | + | b1809 | b1809 | 0.82 | +0.5 |
1,891,673 | + | b1809 | b1809 | 0.82 | +0.7 |
1,891,673 | + | b1809 | b1809 | 0.82 | -0.6 |
1,891,673 | + | b1809 | b1809 | 0.82 | -0.5 |
1,891,679 | - | b1809 | b1809 | 0.83 | +0.1 |
1,891,681 | - | b1809 | b1809 | 0.84 | -1.1 |
1,891,730 | + | +0.8 | |||
1,891,730 | + | -0.5 | |||
1,891,730 | + | -0.4 | |||
1,891,737 | - | -2.5 | |||
1,891,738 | - | -2.8 | |||
1,891,750 | + | -0.2 | |||
1,891,887 | + | +0.1 | |||
1,891,887 | + | -0.7 | |||
1,891,892 | + | -0.8 | |||
1,891,892 | + | +0.5 | |||
1,891,913 | - | +1.5 | |||
1,891,932 | - | -0.6 | |||
1,891,951 | + | -0.3 | |||
1,891,959 | - | -0.4 | |||
1,891,965 | + | -0.2 | |||
1,891,981 | - | -0.7 | |||
1,892,003 | + | +0.2 | |||
1,892,008 | + | -0.4 | |||
1,892,010 | + | +0.1 | |||
1,892,016 | - | -1.3 | |||
1,892,016 | - | -0.5 | |||
1,892,032 | + | +1.1 | |||
1,892,032 | + | +0.8 | |||
1,892,046 | + | -1.7 | |||
1,892,046 | + | -1.1 | |||
1,892,102 | + | -0.2 | |||
1,892,102 | + | -0.2 | |||
1,892,153 | + | +0.4 | |||
1,892,166 | + | +0.5 | |||
1,892,178 | + | +0.5 | |||
1,892,178 | + | -0.7 | |||
1,892,196 | + | yoaC | b1810 | 0.13 | +0.5 |
1,892,196 | + | yoaC | b1810 | 0.13 | -0.7 |
1,892,199 | + | yoaC | b1810 | 0.14 | +0.2 |
1,892,201 | + | yoaC | b1810 | 0.15 | +1.9 |
1,892,226 | - | yoaC | b1810 | 0.23 | +0.5 |
1,892,226 | - | yoaC | b1810 | 0.23 | -1.1 |
1,892,230 | - | yoaC | b1810 | 0.24 | -1.2 |
Or see this region's nucleotide sequence