Strain Fitness in Escherichia coli BW25113 around b0997
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,057,487 | + | torC | b0996 | 0.15 | -0.2 |
1,057,487 | + | torC | b0996 | 0.15 | +0.7 |
1,057,562 | + | torC | b0996 | 0.22 | +0.2 |
1,057,562 | + | torC | b0996 | 0.22 | +0.2 |
1,057,765 | + | torC | b0996 | 0.39 | +0.9 |
1,057,980 | + | torC | b0996 | 0.57 | -1.5 |
1,057,988 | - | torC | b0996 | 0.58 | +0.0 |
1,057,988 | - | torC | b0996 | 0.58 | -0.3 |
1,058,141 | - | torC | b0996 | 0.71 | -0.5 |
1,058,187 | - | torC | b0996 | 0.75 | -0.2 |
1,058,259 | + | torC | b0996 | 0.81 | +0.4 |
1,058,294 | + | torC | b0996 | 0.84 | -0.4 |
1,058,453 | - | +1.9 | |||
1,058,453 | - | +1.7 | |||
1,058,656 | + | -1.0 | |||
1,058,889 | + | torA | b0997 | 0.16 | -0.3 |
1,058,907 | - | torA | b0997 | 0.17 | -0.1 |
1,058,976 | + | torA | b0997 | 0.20 | -2.0 |
1,058,976 | + | torA | b0997 | 0.20 | +1.4 |
1,058,984 | - | torA | b0997 | 0.20 | +0.6 |
1,059,020 | + | torA | b0997 | 0.21 | -1.2 |
1,059,020 | + | torA | b0997 | 0.21 | -0.5 |
1,059,048 | + | torA | b0997 | 0.22 | +0.1 |
1,059,048 | + | torA | b0997 | 0.22 | +0.4 |
1,059,109 | - | torA | b0997 | 0.25 | +0.3 |
1,059,314 | - | torA | b0997 | 0.33 | -1.3 |
1,059,336 | - | torA | b0997 | 0.34 | +0.1 |
1,059,336 | - | torA | b0997 | 0.34 | +0.3 |
1,059,388 | + | torA | b0997 | 0.36 | +0.2 |
1,059,601 | + | torA | b0997 | 0.44 | +0.7 |
1,059,625 | - | torA | b0997 | 0.45 | +0.3 |
1,059,637 | - | torA | b0997 | 0.45 | +0.3 |
1,059,637 | - | torA | b0997 | 0.45 | +0.7 |
1,059,706 | + | torA | b0997 | 0.48 | -1.4 |
1,059,706 | + | torA | b0997 | 0.48 | +0.5 |
1,059,784 | + | torA | b0997 | 0.51 | +0.4 |
1,059,826 | - | torA | b0997 | 0.53 | -0.1 |
1,060,001 | + | torA | b0997 | 0.60 | -0.3 |
1,060,001 | + | torA | b0997 | 0.60 | +1.3 |
1,060,234 | - | torA | b0997 | 0.69 | -1.1 |
1,060,234 | - | torA | b0997 | 0.69 | -0.3 |
1,060,302 | - | torA | b0997 | 0.72 | +0.2 |
1,060,302 | - | torA | b0997 | 0.72 | -0.6 |
1,060,512 | + | torA | b0997 | 0.80 | +0.3 |
1,060,744 | - | torA | b0997 | 0.89 | +0.1 |
1,060,754 | + | torA | b0997 | 0.89 | +1.7 |
1,060,754 | + | torA | b0997 | 0.89 | +0.1 |
1,060,803 | + | +1.2 | |||
1,060,826 | - | +0.5 | |||
1,060,826 | - | +0.7 | |||
1,060,847 | - | +0.1 | |||
1,060,940 | + | -0.4 | |||
1,060,989 | + | +0.7 | |||
1,061,073 | + | +0.4 | |||
1,061,083 | - | torD | b0998 | 0.10 | +0.7 |
1,061,747 | - | +0.7 | |||
1,061,789 | - | +1.8 | |||
1,061,879 | - | cbpM | b0999 | 0.35 | +0.8 |
1,061,889 | - | cbpM | b0999 | 0.38 | -0.6 |
1,061,978 | - | cbpM | b0999 | 0.67 | -0.3 |
1,061,978 | - | cbpM | b0999 | 0.67 | -1.5 |
Or see this region's nucleotide sequence