Strain Fitness in Escherichia coli BW25113 around b0215
Experiment: Cisplatin 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.05 mg/ml |
---|---|---|---|---|---|
remove | |||||
235,257 | + | yafS | b0213 | 0.61 | -0.1 |
235,257 | + | yafS | b0213 | 0.61 | +0.3 |
235,325 | + | yafS | b0213 | 0.70 | -0.9 |
235,333 | - | yafS | b0213 | 0.72 | -1.3 |
235,379 | + | yafS | b0213 | 0.78 | +0.4 |
235,519 | + | -0.1 | |||
235,527 | - | -1.1 | |||
235,569 | - | -0.7 | |||
235,569 | - | +0.8 | |||
236,069 | + | -0.2 | |||
236,072 | - | -1.9 | |||
236,876 | + | -1.3 | |||
236,876 | + | -0.0 | |||
236,910 | + | +0.2 | |||
236,910 | + | +0.2 | |||
236,917 | + | -0.3 | |||
236,965 | + | aspV | b0216 | 0.44 | +1.1 |
236,965 | + | aspV | b0216 | 0.44 | +0.8 |
236,968 | + | aspV | b0216 | 0.48 | +0.1 |
236,985 | + | aspV | b0216 | 0.70 | +0.6 |
236,985 | + | aspV | b0216 | 0.70 | -1.8 |
236,993 | + | aspV | b0216 | 0.81 | +0.8 |
236,994 | + | aspV | b0216 | 0.82 | -2.2 |
237,008 | + | -1.3 | |||
237,008 | + | +0.8 | |||
237,027 | + | +1.1 | |||
237,027 | + | -0.4 | |||
237,110 | + | +0.2 | |||
237,110 | + | -0.2 | |||
237,122 | + | -0.7 | |||
237,131 | + | -0.9 | |||
237,163 | + | +1.5 | |||
237,576 | - | yafT | b0217 | 0.31 | -0.5 |
237,576 | - | yafT | b0217 | 0.31 | +0.6 |
237,619 | - | yafT | b0217 | 0.36 | +0.0 |
237,669 | - | yafT | b0217 | 0.42 | -0.7 |
237,674 | - | yafT | b0217 | 0.43 | -2.6 |
237,687 | + | yafT | b0217 | 0.45 | -0.3 |
237,689 | - | yafT | b0217 | 0.45 | +0.4 |
237,689 | - | yafT | b0217 | 0.45 | +0.8 |
237,741 | + | yafT | b0217 | 0.52 | -1.9 |
237,741 | + | yafT | b0217 | 0.52 | -1.0 |
237,775 | + | yafT | b0217 | 0.56 | +0.3 |
Or see this region's nucleotide sequence