Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4458 and Echvi_4459 are separated by 14 nucleotides Echvi_4459 and Echvi_4460 are separated by 7 nucleotides Echvi_4460 and Echvi_4461 overlap by 4 nucleotides
Echvi_4458: Echvi_4458 - hypothetical protein, at 5,335,913 to 5,336,529
_4458
Echvi_4459: Echvi_4459 - Protein of unknown function (DUF3703)., at 5,336,544 to 5,336,894
_4459
Echvi_4460: Echvi_4460 - Putative protein-S-isoprenylcysteine methyltransferase, at 5,336,902 to 5,337,462
_4460
Echvi_4461: Echvi_4461 - Na+/H+ antiporter NhaA, at 5,337,459 to 5,338,802
_4461
Position (kb) 5336
5337
5338 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5335.905 kb on + strand at 5335.914 kb on + strand at 5335.945 kb on + strand at 5335.976 kb on - strand, within Echvi_4458 at 5335.978 kb on + strand, within Echvi_4458 at 5335.978 kb on + strand, within Echvi_4458 at 5335.978 kb on + strand, within Echvi_4458 at 5335.979 kb on - strand, within Echvi_4458 at 5335.979 kb on - strand, within Echvi_4458 at 5336.067 kb on + strand, within Echvi_4458 at 5336.124 kb on + strand, within Echvi_4458 at 5336.160 kb on + strand, within Echvi_4458 at 5336.161 kb on + strand, within Echvi_4458 at 5336.161 kb on + strand, within Echvi_4458 at 5336.161 kb on + strand, within Echvi_4458 at 5336.161 kb on + strand, within Echvi_4458 at 5336.162 kb on - strand, within Echvi_4458 at 5336.165 kb on + strand, within Echvi_4458 at 5336.180 kb on + strand, within Echvi_4458 at 5336.181 kb on - strand, within Echvi_4458 at 5336.306 kb on + strand, within Echvi_4458 at 5336.306 kb on + strand, within Echvi_4458 at 5336.341 kb on + strand, within Echvi_4458 at 5336.393 kb on - strand, within Echvi_4458 at 5336.397 kb on + strand, within Echvi_4458 at 5336.421 kb on + strand, within Echvi_4458 at 5336.518 kb on + strand at 5336.532 kb on + strand at 5336.533 kb on - strand at 5336.533 kb on - strand at 5336.533 kb on - strand at 5336.533 kb on - strand at 5336.563 kb on - strand at 5336.563 kb on - strand at 5336.634 kb on + strand, within Echvi_4459 at 5336.635 kb on - strand, within Echvi_4459 at 5336.640 kb on + strand, within Echvi_4459 at 5336.686 kb on - strand, within Echvi_4459 at 5336.686 kb on - strand, within Echvi_4459 at 5336.846 kb on + strand, within Echvi_4459 at 5336.849 kb on - strand, within Echvi_4459 at 5336.930 kb on + strand at 5336.930 kb on + strand at 5336.995 kb on + strand, within Echvi_4460 at 5336.996 kb on - strand, within Echvi_4460 at 5337.017 kb on - strand, within Echvi_4460 at 5337.032 kb on + strand, within Echvi_4460 at 5337.033 kb on - strand, within Echvi_4460 at 5337.036 kb on + strand, within Echvi_4460 at 5337.036 kb on + strand, within Echvi_4460 at 5337.037 kb on - strand, within Echvi_4460 at 5337.073 kb on + strand, within Echvi_4460 at 5337.073 kb on + strand, within Echvi_4460 at 5337.073 kb on + strand, within Echvi_4460 at 5337.110 kb on + strand, within Echvi_4460 at 5337.128 kb on - strand, within Echvi_4460 at 5337.219 kb on + strand, within Echvi_4460 at 5337.219 kb on + strand, within Echvi_4460 at 5337.220 kb on - strand, within Echvi_4460 at 5337.269 kb on + strand, within Echvi_4460 at 5337.269 kb on + strand, within Echvi_4460 at 5337.269 kb on + strand, within Echvi_4460 at 5337.270 kb on - strand, within Echvi_4460 at 5337.291 kb on - strand, within Echvi_4460 at 5337.291 kb on - strand, within Echvi_4460 at 5337.310 kb on + strand, within Echvi_4460 at 5337.311 kb on - strand, within Echvi_4460 at 5337.317 kb on - strand, within Echvi_4460 at 5337.319 kb on + strand, within Echvi_4460 at 5337.347 kb on - strand, within Echvi_4460 at 5337.367 kb on - strand, within Echvi_4460 at 5337.396 kb on - strand, within Echvi_4460 at 5337.409 kb on - strand at 5337.412 kb on + strand at 5337.420 kb on - strand at 5337.457 kb on + strand at 5337.458 kb on - strand at 5337.463 kb on - strand at 5337.463 kb on - strand at 5337.485 kb on + strand at 5337.492 kb on + strand at 5337.531 kb on + strand at 5337.608 kb on + strand, within Echvi_4461 at 5337.608 kb on + strand, within Echvi_4461 at 5337.609 kb on - strand, within Echvi_4461 at 5337.641 kb on + strand, within Echvi_4461 at 5337.750 kb on + strand, within Echvi_4461 at 5337.751 kb on - strand, within Echvi_4461 at 5337.751 kb on - strand, within Echvi_4461 at 5337.830 kb on + strand, within Echvi_4461 at 5337.831 kb on - strand, within Echvi_4461 at 5337.883 kb on - strand, within Echvi_4461 at 5338.021 kb on - strand, within Echvi_4461 at 5338.032 kb on + strand, within Echvi_4461 at 5338.032 kb on + strand, within Echvi_4461 at 5338.055 kb on + strand, within Echvi_4461 at 5338.055 kb on + strand, within Echvi_4461 at 5338.077 kb on + strand, within Echvi_4461 at 5338.083 kb on - strand, within Echvi_4461 at 5338.139 kb on - strand, within Echvi_4461 at 5338.179 kb on + strand, within Echvi_4461 at 5338.179 kb on + strand, within Echvi_4461 at 5338.180 kb on - strand, within Echvi_4461 at 5338.214 kb on - strand, within Echvi_4461 at 5338.235 kb on + strand, within Echvi_4461 at 5338.325 kb on + strand, within Echvi_4461 at 5338.326 kb on - strand, within Echvi_4461 at 5338.341 kb on + strand, within Echvi_4461 at 5338.341 kb on + strand, within Echvi_4461 at 5338.343 kb on + strand, within Echvi_4461 at 5338.344 kb on - strand, within Echvi_4461 at 5338.362 kb on - strand, within Echvi_4461 at 5338.394 kb on + strand, within Echvi_4461 at 5338.395 kb on - strand, within Echvi_4461 at 5338.395 kb on - strand, within Echvi_4461 at 5338.398 kb on + strand, within Echvi_4461 at 5338.398 kb on + strand, within Echvi_4461 at 5338.398 kb on + strand, within Echvi_4461 at 5338.399 kb on - strand, within Echvi_4461 at 5338.421 kb on + strand, within Echvi_4461 at 5338.426 kb on - strand, within Echvi_4461 at 5338.428 kb on + strand, within Echvi_4461
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 5,335,905 + +0.4 5,335,914 + -1.1 5,335,945 + -0.2 5,335,976 - Echvi_4458 0.10 +1.0 5,335,978 + Echvi_4458 0.11 +0.5 5,335,978 + Echvi_4458 0.11 +0.4 5,335,978 + Echvi_4458 0.11 +0.0 5,335,979 - Echvi_4458 0.11 +0.5 5,335,979 - Echvi_4458 0.11 +0.5 5,336,067 + Echvi_4458 0.25 +0.8 5,336,124 + Echvi_4458 0.34 -0.3 5,336,160 + Echvi_4458 0.40 +0.5 5,336,161 + Echvi_4458 0.40 -0.0 5,336,161 + Echvi_4458 0.40 +0.5 5,336,161 + Echvi_4458 0.40 -1.8 5,336,161 + Echvi_4458 0.40 +0.8 5,336,162 - Echvi_4458 0.40 -1.0 5,336,165 + Echvi_4458 0.41 -2.1 5,336,180 + Echvi_4458 0.43 +0.2 5,336,181 - Echvi_4458 0.43 -0.3 5,336,306 + Echvi_4458 0.64 -0.4 5,336,306 + Echvi_4458 0.64 +0.3 5,336,341 + Echvi_4458 0.69 -0.7 5,336,393 - Echvi_4458 0.78 +1.1 5,336,397 + Echvi_4458 0.78 -0.3 5,336,421 + Echvi_4458 0.82 -0.6 5,336,518 + -0.9 5,336,532 + -0.7 5,336,533 - -0.2 5,336,533 - +0.4 5,336,533 - +1.1 5,336,533 - +0.0 5,336,563 - -0.5 5,336,563 - +1.3 5,336,634 + Echvi_4459 0.26 -0.6 5,336,635 - Echvi_4459 0.26 +0.7 5,336,640 + Echvi_4459 0.27 +0.1 5,336,686 - Echvi_4459 0.40 -0.3 5,336,686 - Echvi_4459 0.40 +0.5 5,336,846 + Echvi_4459 0.86 -1.0 5,336,849 - Echvi_4459 0.87 +2.3 5,336,930 + -0.2 5,336,930 + -1.3 5,336,995 + Echvi_4460 0.17 +0.6 5,336,996 - Echvi_4460 0.17 +0.1 5,337,017 - Echvi_4460 0.20 +0.1 5,337,032 + Echvi_4460 0.23 +1.2 5,337,033 - Echvi_4460 0.23 -2.0 5,337,036 + Echvi_4460 0.24 -1.0 5,337,036 + Echvi_4460 0.24 -0.3 5,337,037 - Echvi_4460 0.24 -2.1 5,337,073 + Echvi_4460 0.30 -1.7 5,337,073 + Echvi_4460 0.30 -1.3 5,337,073 + Echvi_4460 0.30 +0.7 5,337,110 + Echvi_4460 0.37 -1.1 5,337,128 - Echvi_4460 0.40 -0.5 5,337,219 + Echvi_4460 0.57 -0.7 5,337,219 + Echvi_4460 0.57 +1.0 5,337,220 - Echvi_4460 0.57 -0.5 5,337,269 + Echvi_4460 0.65 -0.5 5,337,269 + Echvi_4460 0.65 -0.1 5,337,269 + Echvi_4460 0.65 -1.4 5,337,270 - Echvi_4460 0.66 +0.5 5,337,291 - Echvi_4460 0.69 +1.5 5,337,291 - Echvi_4460 0.69 -0.1 5,337,310 + Echvi_4460 0.73 -0.9 5,337,311 - Echvi_4460 0.73 -0.1 5,337,317 - Echvi_4460 0.74 -0.6 5,337,319 + Echvi_4460 0.74 -1.5 5,337,347 - Echvi_4460 0.79 +2.1 5,337,367 - Echvi_4460 0.83 -0.7 5,337,396 - Echvi_4460 0.88 -0.7 5,337,409 - +0.3 5,337,412 + -0.9 5,337,420 - +0.3 5,337,457 + -0.6 5,337,458 - -1.3 5,337,463 - -0.1 5,337,463 - +0.1 5,337,485 + -1.0 5,337,492 + +0.5 5,337,531 + +0.0 5,337,608 + Echvi_4461 0.11 -1.6 5,337,608 + Echvi_4461 0.11 -0.3 5,337,609 - Echvi_4461 0.11 -0.5 5,337,641 + Echvi_4461 0.14 -0.0 5,337,750 + Echvi_4461 0.22 -0.0 5,337,751 - Echvi_4461 0.22 -0.1 5,337,751 - Echvi_4461 0.22 +0.2 5,337,830 + Echvi_4461 0.28 +2.1 5,337,831 - Echvi_4461 0.28 +3.1 5,337,883 - Echvi_4461 0.32 +0.4 5,338,021 - Echvi_4461 0.42 +1.7 5,338,032 + Echvi_4461 0.43 +0.4 5,338,032 + Echvi_4461 0.43 -0.5 5,338,055 + Echvi_4461 0.44 -1.7 5,338,055 + Echvi_4461 0.44 +0.4 5,338,077 + Echvi_4461 0.46 -0.5 5,338,083 - Echvi_4461 0.46 -0.9 5,338,139 - Echvi_4461 0.51 +1.1 5,338,179 + Echvi_4461 0.54 -0.2 5,338,179 + Echvi_4461 0.54 -0.8 5,338,180 - Echvi_4461 0.54 +0.5 5,338,214 - Echvi_4461 0.56 +0.1 5,338,235 + Echvi_4461 0.58 +1.4 5,338,325 + Echvi_4461 0.64 -1.8 5,338,326 - Echvi_4461 0.65 +0.6 5,338,341 + Echvi_4461 0.66 -2.5 5,338,341 + Echvi_4461 0.66 -0.2 5,338,343 + Echvi_4461 0.66 +0.3 5,338,344 - Echvi_4461 0.66 +2.6 5,338,362 - Echvi_4461 0.67 +1.9 5,338,394 + Echvi_4461 0.70 -1.7 5,338,395 - Echvi_4461 0.70 -1.0 5,338,395 - Echvi_4461 0.70 +0.9 5,338,398 + Echvi_4461 0.70 -1.4 5,338,398 + Echvi_4461 0.70 -1.9 5,338,398 + Echvi_4461 0.70 -0.4 5,338,399 - Echvi_4461 0.70 -1.0 5,338,421 + Echvi_4461 0.72 -1.5 5,338,426 - Echvi_4461 0.72 +0.3 5,338,428 + Echvi_4461 0.72 -0.0
Or see this region's nucleotide sequence