Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3982 and Echvi_3983 are separated by 116 nucleotides Echvi_3983 and Echvi_3984 are separated by 6 nucleotides Echvi_3984 and Echvi_3985 are separated by 216 nucleotides
Echvi_3982: Echvi_3982 - Alpha-L-rhamnosidase N-terminal domain./Bacterial alpha-L-rhamnosidase., at 4,770,309 to 4,772,963
_3982
Echvi_3983: Echvi_3983 - Transcriptional regulator/sugar kinase, at 4,773,080 to 4,773,955
_3983
Echvi_3984: Echvi_3984 - alpha-1,2-mannosidase, putative, at 4,773,962 to 4,776,124
_3984
Echvi_3985: Echvi_3985 - Uncharacterized conserved protein, at 4,776,341 to 4,777,804
_3985
Position (kb) 4773
4774
4775
4776
4777 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4773.072 kb on - strand at 4773.075 kb on - strand at 4773.090 kb on + strand at 4773.091 kb on - strand at 4773.135 kb on - strand at 4773.136 kb on + strand at 4773.200 kb on + strand, within Echvi_3983 at 4773.220 kb on + strand, within Echvi_3983 at 4773.220 kb on + strand, within Echvi_3983 at 4773.220 kb on + strand, within Echvi_3983 at 4773.308 kb on + strand, within Echvi_3983 at 4773.309 kb on - strand, within Echvi_3983 at 4773.354 kb on - strand, within Echvi_3983 at 4773.388 kb on - strand, within Echvi_3983 at 4773.490 kb on - strand, within Echvi_3983 at 4773.572 kb on + strand, within Echvi_3983 at 4773.573 kb on - strand, within Echvi_3983 at 4773.573 kb on - strand, within Echvi_3983 at 4773.575 kb on + strand, within Echvi_3983 at 4773.576 kb on - strand, within Echvi_3983 at 4773.648 kb on - strand, within Echvi_3983 at 4773.672 kb on + strand, within Echvi_3983 at 4773.672 kb on + strand, within Echvi_3983 at 4773.672 kb on + strand, within Echvi_3983 at 4773.714 kb on + strand, within Echvi_3983 at 4773.754 kb on + strand, within Echvi_3983 at 4773.755 kb on - strand, within Echvi_3983 at 4773.863 kb on - strand, within Echvi_3983 at 4773.917 kb on + strand at 4773.918 kb on - strand at 4773.933 kb on - strand at 4773.963 kb on + strand at 4773.963 kb on + strand at 4773.964 kb on - strand at 4774.001 kb on + strand at 4774.021 kb on - strand at 4774.028 kb on + strand at 4774.139 kb on + strand at 4774.203 kb on + strand, within Echvi_3984 at 4774.203 kb on + strand, within Echvi_3984 at 4774.241 kb on + strand, within Echvi_3984 at 4774.264 kb on + strand, within Echvi_3984 at 4774.273 kb on - strand, within Echvi_3984 at 4774.273 kb on - strand, within Echvi_3984 at 4774.283 kb on + strand, within Echvi_3984 at 4774.318 kb on + strand, within Echvi_3984 at 4774.329 kb on + strand, within Echvi_3984 at 4774.330 kb on - strand, within Echvi_3984 at 4774.332 kb on + strand, within Echvi_3984 at 4774.374 kb on + strand, within Echvi_3984 at 4774.375 kb on - strand, within Echvi_3984 at 4774.442 kb on - strand, within Echvi_3984 at 4774.512 kb on + strand, within Echvi_3984 at 4774.512 kb on + strand, within Echvi_3984 at 4774.512 kb on + strand, within Echvi_3984 at 4774.513 kb on - strand, within Echvi_3984 at 4774.513 kb on - strand, within Echvi_3984 at 4774.545 kb on + strand, within Echvi_3984 at 4774.545 kb on + strand, within Echvi_3984 at 4774.546 kb on - strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.551 kb on + strand, within Echvi_3984 at 4774.552 kb on - strand, within Echvi_3984 at 4774.561 kb on - strand, within Echvi_3984 at 4774.567 kb on - strand, within Echvi_3984 at 4774.567 kb on - strand, within Echvi_3984 at 4774.567 kb on - strand, within Echvi_3984 at 4774.567 kb on - strand, within Echvi_3984 at 4774.680 kb on + strand, within Echvi_3984 at 4774.680 kb on + strand, within Echvi_3984 at 4774.681 kb on - strand, within Echvi_3984 at 4774.734 kb on + strand, within Echvi_3984 at 4774.734 kb on + strand, within Echvi_3984 at 4774.782 kb on - strand, within Echvi_3984 at 4774.782 kb on - strand, within Echvi_3984 at 4774.842 kb on + strand, within Echvi_3984 at 4774.843 kb on - strand, within Echvi_3984 at 4774.867 kb on - strand, within Echvi_3984 at 4774.890 kb on + strand, within Echvi_3984 at 4774.925 kb on - strand, within Echvi_3984 at 4775.072 kb on - strand, within Echvi_3984 at 4775.077 kb on - strand, within Echvi_3984 at 4775.080 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.101 kb on + strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.102 kb on - strand, within Echvi_3984 at 4775.103 kb on + strand, within Echvi_3984 at 4775.103 kb on + strand, within Echvi_3984 at 4775.104 kb on - strand, within Echvi_3984 at 4775.104 kb on - strand, within Echvi_3984 at 4775.207 kb on - strand, within Echvi_3984 at 4775.208 kb on + strand, within Echvi_3984 at 4775.208 kb on + strand, within Echvi_3984 at 4775.208 kb on + strand, within Echvi_3984 at 4775.209 kb on - strand, within Echvi_3984 at 4775.209 kb on - strand, within Echvi_3984 at 4775.251 kb on + strand, within Echvi_3984 at 4775.465 kb on + strand, within Echvi_3984 at 4775.465 kb on + strand, within Echvi_3984 at 4775.466 kb on - strand, within Echvi_3984 at 4775.466 kb on - strand, within Echvi_3984 at 4775.467 kb on + strand, within Echvi_3984 at 4775.467 kb on + strand, within Echvi_3984 at 4775.468 kb on - strand, within Echvi_3984 at 4775.468 kb on - strand, within Echvi_3984 at 4775.487 kb on + strand, within Echvi_3984 at 4775.487 kb on + strand, within Echvi_3984 at 4775.487 kb on + strand, within Echvi_3984 at 4775.488 kb on - strand, within Echvi_3984 at 4775.488 kb on - strand, within Echvi_3984 at 4775.488 kb on - strand, within Echvi_3984 at 4775.651 kb on + strand, within Echvi_3984 at 4775.652 kb on - strand, within Echvi_3984 at 4775.652 kb on - strand, within Echvi_3984 at 4775.676 kb on - strand, within Echvi_3984 at 4775.683 kb on - strand, within Echvi_3984 at 4775.703 kb on + strand, within Echvi_3984 at 4775.703 kb on + strand, within Echvi_3984 at 4775.703 kb on + strand, within Echvi_3984 at 4775.707 kb on - strand, within Echvi_3984 at 4775.780 kb on + strand, within Echvi_3984 at 4775.794 kb on + strand, within Echvi_3984 at 4775.795 kb on - strand, within Echvi_3984 at 4775.827 kb on + strand, within Echvi_3984 at 4775.854 kb on - strand, within Echvi_3984 at 4775.971 kb on + strand at 4775.972 kb on - strand at 4775.972 kb on - strand at 4776.007 kb on + strand at 4776.028 kb on - strand at 4776.036 kb on - strand at 4776.086 kb on + strand at 4776.098 kb on + strand at 4776.099 kb on - strand at 4776.099 kb on - strand at 4776.104 kb on - strand at 4776.124 kb on + strand at 4776.124 kb on + strand at 4776.124 kb on + strand at 4776.125 kb on - strand at 4776.128 kb on + strand at 4776.128 kb on + strand at 4776.128 kb on + strand at 4776.129 kb on - strand at 4776.129 kb on - strand at 4776.129 kb on - strand at 4776.130 kb on + strand at 4776.130 kb on + strand at 4776.131 kb on - strand at 4776.131 kb on - strand at 4776.135 kb on + strand at 4776.135 kb on + strand at 4776.136 kb on - strand at 4776.136 kb on - strand at 4776.139 kb on + strand at 4776.139 kb on + strand at 4776.140 kb on - strand at 4776.143 kb on - strand at 4776.161 kb on - strand at 4776.179 kb on + strand at 4776.183 kb on + strand at 4776.183 kb on + strand at 4776.186 kb on + strand at 4776.193 kb on + strand at 4776.228 kb on + strand at 4776.229 kb on - strand at 4776.233 kb on - strand at 4776.238 kb on + strand at 4776.245 kb on + strand at 4776.245 kb on + strand at 4776.245 kb on + strand at 4776.245 kb on + strand at 4776.245 kb on + strand at 4776.246 kb on - strand at 4776.250 kb on + strand at 4776.255 kb on + strand at 4776.331 kb on + strand at 4776.331 kb on + strand at 4776.343 kb on - strand at 4776.379 kb on - strand at 4776.400 kb on + strand at 4776.466 kb on + strand at 4776.466 kb on + strand at 4776.467 kb on - strand at 4776.548 kb on + strand, within Echvi_3985 at 4776.571 kb on + strand, within Echvi_3985 at 4776.571 kb on + strand, within Echvi_3985 at 4776.571 kb on + strand, within Echvi_3985 at 4776.571 kb on + strand, within Echvi_3985 at 4776.572 kb on - strand, within Echvi_3985 at 4776.572 kb on - strand, within Echvi_3985 at 4776.574 kb on - strand, within Echvi_3985 at 4776.638 kb on - strand, within Echvi_3985 at 4776.686 kb on + strand, within Echvi_3985 at 4776.819 kb on + strand, within Echvi_3985 at 4776.820 kb on - strand, within Echvi_3985 at 4776.820 kb on - strand, within Echvi_3985 at 4776.901 kb on - strand, within Echvi_3985 at 4776.901 kb on - strand, within Echvi_3985 at 4776.901 kb on - strand, within Echvi_3985 at 4776.901 kb on - strand, within Echvi_3985 at 4777.086 kb on + strand, within Echvi_3985 at 4777.087 kb on - strand, within Echvi_3985 at 4777.087 kb on - strand, within Echvi_3985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 4,773,072 - -0.5 4,773,075 - +0.2 4,773,090 + -2.0 4,773,091 - -0.0 4,773,135 - -0.2 4,773,136 + -1.9 4,773,200 + Echvi_3983 0.14 -0.2 4,773,220 + Echvi_3983 0.16 +0.3 4,773,220 + Echvi_3983 0.16 +0.9 4,773,220 + Echvi_3983 0.16 +0.5 4,773,308 + Echvi_3983 0.26 -0.1 4,773,309 - Echvi_3983 0.26 -0.1 4,773,354 - Echvi_3983 0.31 +0.4 4,773,388 - Echvi_3983 0.35 -1.5 4,773,490 - Echvi_3983 0.47 -1.4 4,773,572 + Echvi_3983 0.56 -1.1 4,773,573 - Echvi_3983 0.56 +0.7 4,773,573 - Echvi_3983 0.56 -1.0 4,773,575 + Echvi_3983 0.57 -0.7 4,773,576 - Echvi_3983 0.57 +0.5 4,773,648 - Echvi_3983 0.65 -0.1 4,773,672 + Echvi_3983 0.68 -0.7 4,773,672 + Echvi_3983 0.68 -1.1 4,773,672 + Echvi_3983 0.68 -1.6 4,773,714 + Echvi_3983 0.72 +0.5 4,773,754 + Echvi_3983 0.77 +0.3 4,773,755 - Echvi_3983 0.77 -0.0 4,773,863 - Echvi_3983 0.89 -0.6 4,773,917 + -0.3 4,773,918 - +0.2 4,773,933 - -0.4 4,773,963 + -0.1 4,773,963 + -1.1 4,773,964 - -0.1 4,774,001 + +0.0 4,774,021 - +0.9 4,774,028 + -2.3 4,774,139 + -0.8 4,774,203 + Echvi_3984 0.11 -1.6 4,774,203 + Echvi_3984 0.11 -2.0 4,774,241 + Echvi_3984 0.13 +0.4 4,774,264 + Echvi_3984 0.14 -0.1 4,774,273 - Echvi_3984 0.14 +0.3 4,774,273 - Echvi_3984 0.14 -0.6 4,774,283 + Echvi_3984 0.15 +0.6 4,774,318 + Echvi_3984 0.16 +0.0 4,774,329 + Echvi_3984 0.17 +0.4 4,774,330 - Echvi_3984 0.17 +0.5 4,774,332 + Echvi_3984 0.17 +0.1 4,774,374 + Echvi_3984 0.19 -1.1 4,774,375 - Echvi_3984 0.19 +0.5 4,774,442 - Echvi_3984 0.22 +0.8 4,774,512 + Echvi_3984 0.25 +0.5 4,774,512 + Echvi_3984 0.25 +0.5 4,774,512 + Echvi_3984 0.25 -0.3 4,774,513 - Echvi_3984 0.25 -0.2 4,774,513 - Echvi_3984 0.25 +0.2 4,774,545 + Echvi_3984 0.27 +0.7 4,774,545 + Echvi_3984 0.27 +1.9 4,774,546 - Echvi_3984 0.27 +1.1 4,774,551 + Echvi_3984 0.27 -0.4 4,774,551 + Echvi_3984 0.27 -0.4 4,774,551 + Echvi_3984 0.27 -1.8 4,774,551 + Echvi_3984 0.27 -1.5 4,774,551 + Echvi_3984 0.27 +0.1 4,774,551 + Echvi_3984 0.27 -1.2 4,774,551 + Echvi_3984 0.27 -0.3 4,774,552 - Echvi_3984 0.27 +0.4 4,774,561 - Echvi_3984 0.28 +4.1 4,774,567 - Echvi_3984 0.28 +0.4 4,774,567 - Echvi_3984 0.28 -0.0 4,774,567 - Echvi_3984 0.28 -1.1 4,774,567 - Echvi_3984 0.28 +1.0 4,774,680 + Echvi_3984 0.33 +0.7 4,774,680 + Echvi_3984 0.33 +0.8 4,774,681 - Echvi_3984 0.33 +0.6 4,774,734 + Echvi_3984 0.36 +1.0 4,774,734 + Echvi_3984 0.36 -1.3 4,774,782 - Echvi_3984 0.38 +0.6 4,774,782 - Echvi_3984 0.38 +0.9 4,774,842 + Echvi_3984 0.41 -0.1 4,774,843 - Echvi_3984 0.41 +1.1 4,774,867 - Echvi_3984 0.42 +1.0 4,774,890 + Echvi_3984 0.43 +0.1 4,774,925 - Echvi_3984 0.45 -0.3 4,775,072 - Echvi_3984 0.51 +1.0 4,775,077 - Echvi_3984 0.52 +0.3 4,775,080 + Echvi_3984 0.52 -0.6 4,775,101 + Echvi_3984 0.53 -0.3 4,775,101 + Echvi_3984 0.53 +0.5 4,775,101 + Echvi_3984 0.53 +1.0 4,775,101 + Echvi_3984 0.53 -1.6 4,775,101 + Echvi_3984 0.53 -1.1 4,775,101 + Echvi_3984 0.53 -0.5 4,775,101 + Echvi_3984 0.53 -0.1 4,775,102 - Echvi_3984 0.53 -0.8 4,775,102 - Echvi_3984 0.53 +0.5 4,775,102 - Echvi_3984 0.53 -0.5 4,775,102 - Echvi_3984 0.53 -0.3 4,775,102 - Echvi_3984 0.53 -0.2 4,775,102 - Echvi_3984 0.53 +0.1 4,775,102 - Echvi_3984 0.53 +0.5 4,775,103 + Echvi_3984 0.53 -0.5 4,775,103 + Echvi_3984 0.53 -2.4 4,775,104 - Echvi_3984 0.53 +0.4 4,775,104 - Echvi_3984 0.53 +0.4 4,775,207 - Echvi_3984 0.58 +0.4 4,775,208 + Echvi_3984 0.58 -0.7 4,775,208 + Echvi_3984 0.58 +0.5 4,775,208 + Echvi_3984 0.58 +0.2 4,775,209 - Echvi_3984 0.58 +1.0 4,775,209 - Echvi_3984 0.58 +1.5 4,775,251 + Echvi_3984 0.60 +1.2 4,775,465 + Echvi_3984 0.69 +0.8 4,775,465 + Echvi_3984 0.69 -1.1 4,775,466 - Echvi_3984 0.70 +0.5 4,775,466 - Echvi_3984 0.70 +0.9 4,775,467 + Echvi_3984 0.70 +3.1 4,775,467 + Echvi_3984 0.70 +2.1 4,775,468 - Echvi_3984 0.70 -0.1 4,775,468 - Echvi_3984 0.70 -0.5 4,775,487 + Echvi_3984 0.71 +1.0 4,775,487 + Echvi_3984 0.71 -1.2 4,775,487 + Echvi_3984 0.71 +0.9 4,775,488 - Echvi_3984 0.71 +0.5 4,775,488 - Echvi_3984 0.71 -0.6 4,775,488 - Echvi_3984 0.71 +0.9 4,775,651 + Echvi_3984 0.78 +0.3 4,775,652 - Echvi_3984 0.78 +0.6 4,775,652 - Echvi_3984 0.78 +1.0 4,775,676 - Echvi_3984 0.79 -0.6 4,775,683 - Echvi_3984 0.80 -0.7 4,775,703 + Echvi_3984 0.80 -0.7 4,775,703 + Echvi_3984 0.80 -0.0 4,775,703 + Echvi_3984 0.80 +0.2 4,775,707 - Echvi_3984 0.81 -0.3 4,775,780 + Echvi_3984 0.84 +1.5 4,775,794 + Echvi_3984 0.85 -2.3 4,775,795 - Echvi_3984 0.85 -0.6 4,775,827 + Echvi_3984 0.86 -0.5 4,775,854 - Echvi_3984 0.87 -0.0 4,775,971 + -1.2 4,775,972 - -1.4 4,775,972 - +0.9 4,776,007 + -0.7 4,776,028 - -2.5 4,776,036 - -1.4 4,776,086 + +1.1 4,776,098 + -1.5 4,776,099 - +1.9 4,776,099 - -0.4 4,776,104 - +1.1 4,776,124 + +0.2 4,776,124 + -1.4 4,776,124 + +0.3 4,776,125 - -0.6 4,776,128 + +0.3 4,776,128 + -0.0 4,776,128 + -0.5 4,776,129 - -0.2 4,776,129 - +1.0 4,776,129 - +1.0 4,776,130 + -1.0 4,776,130 + +0.6 4,776,131 - +0.2 4,776,131 - +1.2 4,776,135 + +0.6 4,776,135 + -0.5 4,776,136 - +0.7 4,776,136 - -0.7 4,776,139 + -0.4 4,776,139 + -0.5 4,776,140 - +1.1 4,776,143 - +0.4 4,776,161 - +0.9 4,776,179 + -0.2 4,776,183 + -1.0 4,776,183 + +1.7 4,776,186 + -1.0 4,776,193 + +0.6 4,776,228 + +2.3 4,776,229 - -0.5 4,776,233 - -0.7 4,776,238 + -0.2 4,776,245 + -0.4 4,776,245 + -0.5 4,776,245 + -0.1 4,776,245 + +0.8 4,776,245 + +2.6 4,776,246 - +1.7 4,776,250 + -0.6 4,776,255 + -0.8 4,776,331 + +1.2 4,776,331 + +0.7 4,776,343 - +1.2 4,776,379 - +0.4 4,776,400 + +0.2 4,776,466 + -0.7 4,776,466 + -0.9 4,776,467 - +0.6 4,776,548 + Echvi_3985 0.14 +0.4 4,776,571 + Echvi_3985 0.16 +0.3 4,776,571 + Echvi_3985 0.16 -0.5 4,776,571 + Echvi_3985 0.16 +0.9 4,776,571 + Echvi_3985 0.16 +2.1 4,776,572 - Echvi_3985 0.16 +1.6 4,776,572 - Echvi_3985 0.16 +1.0 4,776,574 - Echvi_3985 0.16 +0.6 4,776,638 - Echvi_3985 0.20 +1.2 4,776,686 + Echvi_3985 0.24 -0.1 4,776,819 + Echvi_3985 0.33 +0.1 4,776,820 - Echvi_3985 0.33 +0.7 4,776,820 - Echvi_3985 0.33 +1.7 4,776,901 - Echvi_3985 0.38 +0.1 4,776,901 - Echvi_3985 0.38 +1.9 4,776,901 - Echvi_3985 0.38 +2.1 4,776,901 - Echvi_3985 0.38 +0.2 4,777,086 + Echvi_3985 0.51 +1.1 4,777,087 - Echvi_3985 0.51 +1.0 4,777,087 - Echvi_3985 0.51 +2.1
Or see this region's nucleotide sequence