Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3899

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3896 and Echvi_3897 overlap by 3291 nucleotidesEchvi_3897 and Echvi_3898 overlap by 1 nucleotidesEchvi_3898 and Echvi_3899 are separated by 170 nucleotidesEchvi_3899 and Echvi_3900 are separated by 957 nucleotides Echvi_3896: Echvi_3896 - PAP2 superfamily., at 4,660,570 to 4,664,363 _3896 Echvi_3897: Echvi_3897 - hypothetical protein, at 4,661,073 to 4,661,360 _3897 Echvi_3898: Echvi_3898 - Transposase and inactivated derivatives, at 4,661,360 to 4,661,701 _3898 Echvi_3899: Echvi_3899 - Transposase and inactivated derivatives, at 4,661,872 to 4,663,425 _3899 Echvi_3900: Echvi_3900 - Thiol-disulfide isomerase and thioredoxins, at 4,664,383 to 4,665,273 _3900 Position (kb) 4661 4662 4663 4664Strain fitness (log2 ratio) -1 0 1at 4660.884 kb on + strandat 4660.885 kb on - strandat 4660.927 kb on - strandat 4660.927 kb on - strandat 4660.943 kb on + strandat 4660.944 kb on - strandat 4661.013 kb on - strand, within Echvi_3896at 4661.013 kb on - strand, within Echvi_3896at 4661.015 kb on - strand, within Echvi_3896at 4661.020 kb on - strand, within Echvi_3896at 4661.020 kb on - strand, within Echvi_3896at 4663.474 kb on + strandat 4663.475 kb on - strandat 4663.475 kb on - strandat 4663.476 kb on + strandat 4663.476 kb on + strandat 4663.488 kb on - strandat 4663.647 kb on + strandat 4663.671 kb on - strandat 4663.741 kb on - strandat 4663.808 kb on + strandat 4663.808 kb on + strandat 4663.809 kb on - strandat 4663.818 kb on + strandat 4663.818 kb on + strandat 4663.830 kb on - strandat 4664.139 kb on + strandat 4664.161 kb on - strandat 4664.162 kb on + strandat 4664.219 kb on - strandat 4664.287 kb on + strandat 4664.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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4,660,884 + +0.5
4,660,885 - +0.5
4,660,927 - +1.1
4,660,927 - +0.5
4,660,943 + -0.2
4,660,944 - -0.8
4,661,013 - Echvi_3896 0.12 +0.9
4,661,013 - Echvi_3896 0.12 -0.5
4,661,015 - Echvi_3896 0.12 -0.1
4,661,020 - Echvi_3896 0.12 -0.4
4,661,020 - Echvi_3896 0.12 +1.1
4,663,474 + +0.1
4,663,475 - +1.1
4,663,475 - +1.0
4,663,476 + +0.4
4,663,476 + +0.0
4,663,488 - +1.6
4,663,647 + -0.5
4,663,671 - +0.5
4,663,741 - +0.3
4,663,808 + +0.2
4,663,808 + +0.1
4,663,809 - +0.2
4,663,818 + +0.4
4,663,818 + +1.1
4,663,830 - +0.5
4,664,139 + +0.5
4,664,161 - +0.0
4,664,162 + +1.5
4,664,219 - +0.3
4,664,287 + +0.6
4,664,320 - +0.3

Or see this region's nucleotide sequence