Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3873

Experiment: m.b. Carbenicillin 0.2 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Carbenicillin 0.2 mg/ml
4,627,983	+				+0.1
4,627,984	-				-1.3
4,627,984	-				+0.7
4,627,984	-				-1.6
4,628,001	-				+0.2
4,628,031	+				-0.7
4,628,069	+		Echvi_3871	0.16	+0.1
4,628,123	+		Echvi_3871	0.29	+0.4
4,628,123	+		Echvi_3871	0.29	-0.3
4,628,177	+		Echvi_3871	0.41	+0.0
4,628,178	-		Echvi_3871	0.42	+0.5
4,628,202	+		Echvi_3871	0.47	+0.4
4,628,262	+		Echvi_3871	0.62	-0.6
4,628,352	+		Echvi_3871	0.83	+1.1
4,628,401	-				-0.7
4,628,403	+				-0.9
4,628,404	-				+0.0
4,628,421	-				-0.7
4,628,421	-				+0.2
4,628,421	-				+1.6
4,628,421	-				+1.1
4,628,425	+				-1.3
4,628,426	-				+2.1
4,628,426	-				+0.1
4,628,444	+				-0.6
4,628,450	+				+0.5
4,628,507	+				-0.9
4,628,739	+		Echvi_3872	0.65	+0.5
4,628,747	-		Echvi_3872	0.67	+1.2
4,628,824	-		Echvi_3872	0.88	+1.1
4,628,834	-				-2.1
4,628,881	-				+0.6
4,628,881	-				-0.5
4,628,888	+				-0.7
4,628,889	-				-0.6
4,628,893	+				-1.2
4,628,997	+				-0.5
4,628,998	-				-0.8
4,629,012	-		Echvi_3873	0.10	+1.6
4,629,054	+		Echvi_3873	0.16	+1.3
4,629,069	+		Echvi_3873	0.18	-0.5
4,629,138	+		Echvi_3873	0.28	-1.2
4,629,138	+		Echvi_3873	0.28	+1.5
4,629,227	+		Echvi_3873	0.40	+0.4
4,629,228	-		Echvi_3873	0.40	+1.1
4,629,228	-		Echvi_3873	0.40	+0.4
4,629,228	-		Echvi_3873	0.40	+0.4
4,629,232	+		Echvi_3873	0.40	-1.7
4,629,233	-		Echvi_3873	0.41	+0.1
4,629,233	-		Echvi_3873	0.41	-1.1
4,629,233	-		Echvi_3873	0.41	+1.0
4,629,290	-		Echvi_3873	0.48	+0.0
4,629,300	-		Echvi_3873	0.50	-1.3
4,629,300	-		Echvi_3873	0.50	+0.4
4,629,309	-		Echvi_3873	0.51	+0.8
4,629,416	-		Echvi_3873	0.65	+0.4
4,629,416	-		Echvi_3873	0.65	+1.3
4,629,417	+		Echvi_3873	0.66	-0.6
4,629,418	-		Echvi_3873	0.66	+1.1
4,629,491	+		Echvi_3873	0.76	-0.9
4,629,491	+		Echvi_3873	0.76	+0.4
4,629,501	-		Echvi_3873	0.77	+0.2
4,629,585	-		Echvi_3873	0.88	+0.5
4,629,592	-		Echvi_3873	0.89	-0.7
4,629,683	-				-0.9
4,629,683	-				+1.4
4,629,684	+				+0.4
4,629,684	+				-0.1
4,629,685	-				+0.7
4,629,686	+				-0.2
4,629,686	+				-0.3
4,629,686	+				+0.5
4,629,686	+				-0.1
4,629,686	+				-0.6
4,629,686	+				+0.3
4,629,686	+				-1.5
4,629,687	-				+0.5
4,629,687	-				-0.1
4,629,687	-				+0.5
4,629,687	-				+1.1
4,629,687	-				+1.5
4,629,690	+				-0.1
4,629,710	+				-0.2
4,629,710	+				-1.3
4,629,710	+				+0.2
4,629,711	-				+1.9
4,629,752	-				-0.7
4,629,759	-				+1.1
4,629,901	+		Echvi_3874	0.25	-0.7
4,629,928	+		Echvi_3874	0.28	-0.3
4,630,014	+		Echvi_3874	0.39	+0.0
4,630,024	+		Echvi_3874	0.40	+0.4
4,630,029	+		Echvi_3874	0.41	-0.8
4,630,037	+		Echvi_3874	0.42	+0.9
4,630,037	+		Echvi_3874	0.42	-0.4
4,630,103	-		Echvi_3874	0.50	+0.3
4,630,116	+		Echvi_3874	0.51	+0.5
4,630,128	+		Echvi_3874	0.53	-0.5
4,630,175	-		Echvi_3874	0.59	-0.6
4,630,175	-		Echvi_3874	0.59	+0.3
4,630,175	-		Echvi_3874	0.59	-1.4
4,630,245	-		Echvi_3874	0.67	-0.9
4,630,273	+		Echvi_3874	0.71	-0.1
4,630,273	+		Echvi_3874	0.71	+0.1
4,630,273	+		Echvi_3874	0.71	-1.7
4,630,364	+		Echvi_3874	0.82	+0.5
4,630,368	+		Echvi_3874	0.83	+0.4
4,630,368	+		Echvi_3874	0.83	-1.3
4,630,368	+		Echvi_3874	0.83	-2.6
4,630,369	-		Echvi_3874	0.83	+0.9
4,630,369	-		Echvi_3874	0.83	+0.8
4,630,369	-		Echvi_3874	0.83	-0.5
4,630,396	-		Echvi_3874	0.86	-1.2
4,630,396	-		Echvi_3874	0.86	-0.6
4,630,464	+				-0.4
4,630,509	+				-0.3
4,630,515	-				-2.1
4,630,515	-				+0.4
4,630,538	+				-0.7
4,630,538	+				-1.4
4,630,545	+				-1.1
4,630,546	-				-0.5
4,630,635	+				+0.4
4,630,668	+				+1.0