Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1973

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1972 and Echvi_1973 are separated by 324 nucleotidesEchvi_1973 and Echvi_1974 are separated by 90 nucleotidesEchvi_1974 and Echvi_1975 are separated by 144 nucleotides Echvi_1972: Echvi_1972 - TonB-linked outer membrane protein, SusC/RagA family, at 2,321,642 to 2,325,247 _1972 Echvi_1973: Echvi_1973 - Fe2+-dicitrate sensor, membrane component, at 2,325,572 to 2,326,612 _1973 Echvi_1974: Echvi_1974 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 2,326,703 to 2,327,302 _1974 Echvi_1975: Echvi_1975 - hypothetical protein, at 2,327,447 to 2,327,845 _1975 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2324.585 kb on + strand, within Echvi_1972at 2324.611 kb on + strand, within Echvi_1972at 2324.612 kb on - strand, within Echvi_1972at 2324.723 kb on - strand, within Echvi_1972at 2324.741 kb on - strand, within Echvi_1972at 2324.744 kb on + strand, within Echvi_1972at 2324.744 kb on + strand, within Echvi_1972at 2324.839 kb on - strand, within Echvi_1972at 2324.874 kb on - strand, within Echvi_1972at 2324.943 kb on + strandat 2324.944 kb on - strandat 2325.009 kb on - strandat 2325.063 kb on - strandat 2325.065 kb on + strandat 2325.065 kb on + strandat 2325.082 kb on - strandat 2325.082 kb on - strandat 2325.119 kb on - strandat 2325.121 kb on + strandat 2325.122 kb on - strandat 2325.122 kb on - strandat 2325.175 kb on - strandat 2325.195 kb on + strandat 2325.197 kb on + strandat 2325.198 kb on - strandat 2325.198 kb on - strandat 2325.198 kb on - strandat 2325.261 kb on + strandat 2325.276 kb on - strandat 2325.276 kb on - strandat 2325.321 kb on - strandat 2325.324 kb on + strandat 2325.325 kb on - strandat 2325.325 kb on - strandat 2325.409 kb on - strandat 2325.428 kb on + strandat 2325.439 kb on + strandat 2325.439 kb on + strandat 2325.439 kb on + strandat 2325.514 kb on - strandat 2325.514 kb on - strandat 2325.514 kb on - strandat 2325.516 kb on - strandat 2325.584 kb on + strandat 2325.595 kb on + strandat 2325.595 kb on + strandat 2325.682 kb on + strand, within Echvi_1973at 2325.687 kb on + strand, within Echvi_1973at 2325.687 kb on + strand, within Echvi_1973at 2325.735 kb on + strand, within Echvi_1973at 2325.817 kb on + strand, within Echvi_1973at 2325.818 kb on - strand, within Echvi_1973at 2325.848 kb on - strand, within Echvi_1973at 2325.907 kb on + strandat 2325.936 kb on - strand, within Echvi_1973at 2325.963 kb on - strand, within Echvi_1973at 2325.982 kb on - strand, within Echvi_1973at 2326.003 kb on + strand, within Echvi_1973at 2326.039 kb on + strand, within Echvi_1973at 2326.042 kb on + strand, within Echvi_1973at 2326.043 kb on - strand, within Echvi_1973at 2326.184 kb on + strand, within Echvi_1973at 2326.184 kb on + strand, within Echvi_1973at 2326.184 kb on + strand, within Echvi_1973at 2326.185 kb on - strand, within Echvi_1973at 2326.186 kb on + strand, within Echvi_1973at 2326.186 kb on + strand, within Echvi_1973at 2326.205 kb on - strand, within Echvi_1973at 2326.205 kb on - strand, within Echvi_1973at 2326.247 kb on + strand, within Echvi_1973at 2326.247 kb on + strand, within Echvi_1973at 2326.248 kb on - strand, within Echvi_1973at 2326.286 kb on + strand, within Echvi_1973at 2326.286 kb on + strand, within Echvi_1973at 2326.287 kb on - strand, within Echvi_1973at 2326.290 kb on - strand, within Echvi_1973at 2326.290 kb on - strand, within Echvi_1973at 2326.290 kb on - strand, within Echvi_1973at 2326.310 kb on + strand, within Echvi_1973at 2326.311 kb on - strand, within Echvi_1973at 2326.314 kb on - strand, within Echvi_1973at 2326.363 kb on + strand, within Echvi_1973at 2326.363 kb on + strand, within Echvi_1973at 2326.414 kb on + strand, within Echvi_1973at 2326.414 kb on + strand, within Echvi_1973at 2326.415 kb on - strand, within Echvi_1973at 2326.419 kb on + strand, within Echvi_1973at 2326.420 kb on - strand, within Echvi_1973at 2326.420 kb on - strand, within Echvi_1973at 2326.466 kb on + strand, within Echvi_1973at 2326.467 kb on - strand, within Echvi_1973at 2326.467 kb on - strand, within Echvi_1973at 2326.467 kb on - strand, within Echvi_1973at 2326.478 kb on + strand, within Echvi_1973at 2326.486 kb on + strand, within Echvi_1973at 2326.487 kb on - strand, within Echvi_1973at 2326.523 kb on + strandat 2326.524 kb on - strandat 2326.671 kb on + strandat 2326.671 kb on + strandat 2326.672 kb on - strandat 2326.675 kb on - strandat 2326.679 kb on - strandat 2326.724 kb on + strandat 2326.740 kb on + strandat 2326.758 kb on - strandat 2326.832 kb on + strand, within Echvi_1974at 2326.832 kb on + strand, within Echvi_1974at 2326.833 kb on - strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.874 kb on + strand, within Echvi_1974at 2326.875 kb on - strand, within Echvi_1974at 2326.875 kb on - strand, within Echvi_1974at 2326.875 kb on - strand, within Echvi_1974at 2326.875 kb on - strand, within Echvi_1974at 2326.875 kb on - strand, within Echvi_1974at 2326.875 kb on - strand, within Echvi_1974at 2326.876 kb on + strand, within Echvi_1974at 2326.876 kb on + strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.877 kb on - strand, within Echvi_1974at 2326.878 kb on + strand, within Echvi_1974at 2326.879 kb on - strand, within Echvi_1974at 2326.897 kb on + strand, within Echvi_1974at 2326.898 kb on - strand, within Echvi_1974at 2326.947 kb on - strand, within Echvi_1974at 2326.996 kb on + strand, within Echvi_1974at 2326.996 kb on + strand, within Echvi_1974at 2326.997 kb on - strand, within Echvi_1974at 2326.997 kb on - strand, within Echvi_1974at 2326.999 kb on + strand, within Echvi_1974at 2327.081 kb on + strand, within Echvi_1974at 2327.082 kb on - strand, within Echvi_1974at 2327.133 kb on - strand, within Echvi_1974at 2327.157 kb on - strand, within Echvi_1974at 2327.183 kb on + strand, within Echvi_1974at 2327.183 kb on + strand, within Echvi_1974at 2327.266 kb on - strandat 2327.266 kb on - strandat 2327.278 kb on + strandat 2327.284 kb on + strandat 2327.285 kb on - strandat 2327.285 kb on - strandat 2327.303 kb on - strandat 2327.309 kb on + strandat 2327.343 kb on - strandat 2327.374 kb on - strandat 2327.381 kb on - strandat 2327.390 kb on + strandat 2327.390 kb on + strandat 2327.391 kb on - strandat 2327.394 kb on + strandat 2327.394 kb on + strandat 2327.394 kb on + strandat 2327.394 kb on + strandat 2327.394 kb on + strandat 2327.399 kb on + strandat 2327.412 kb on + strandat 2327.455 kb on + strandat 2327.478 kb on + strandat 2327.533 kb on + strand, within Echvi_1975at 2327.534 kb on - strand, within Echvi_1975at 2327.534 kb on - strand, within Echvi_1975at 2327.534 kb on - strand, within Echvi_1975at 2327.564 kb on - strand, within Echvi_1975at 2327.596 kb on - strand, within Echvi_1975

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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2,324,585 + Echvi_1972 0.82 +0.7
2,324,611 + Echvi_1972 0.82 -1.1
2,324,612 - Echvi_1972 0.82 +1.0
2,324,723 - Echvi_1972 0.85 +0.5
2,324,741 - Echvi_1972 0.86 +0.7
2,324,744 + Echvi_1972 0.86 +0.2
2,324,744 + Echvi_1972 0.86 -0.1
2,324,839 - Echvi_1972 0.89 -0.4
2,324,874 - Echvi_1972 0.90 -0.1
2,324,943 + +0.4
2,324,944 - -1.2
2,325,009 - -0.3
2,325,063 - -1.0
2,325,065 + -0.6
2,325,065 + -0.2
2,325,082 - -0.1
2,325,082 - -0.5
2,325,119 - +0.1
2,325,121 + -1.0
2,325,122 - -0.1
2,325,122 - +0.1
2,325,175 - +0.5
2,325,195 + +0.9
2,325,197 + +0.5
2,325,198 - +0.1
2,325,198 - -0.6
2,325,198 - +0.6
2,325,261 + +1.6
2,325,276 - -0.1
2,325,276 - +0.0
2,325,321 - -0.2
2,325,324 + -0.6
2,325,325 - -0.5
2,325,325 - +0.1
2,325,409 - +2.7
2,325,428 + +0.4
2,325,439 + +0.2
2,325,439 + -0.6
2,325,439 + -0.2
2,325,514 - -0.9
2,325,514 - -0.9
2,325,514 - +0.7
2,325,516 - +0.0
2,325,584 + -1.6
2,325,595 + -0.1
2,325,595 + -0.7
2,325,682 + Echvi_1973 0.11 -0.7
2,325,687 + Echvi_1973 0.11 -1.7
2,325,687 + Echvi_1973 0.11 +0.4
2,325,735 + Echvi_1973 0.16 -0.5
2,325,817 + Echvi_1973 0.24 +0.2
2,325,818 - Echvi_1973 0.24 +2.0
2,325,848 - Echvi_1973 0.27 +0.9
2,325,907 + +3.7
2,325,936 - Echvi_1973 0.35 +1.2
2,325,963 - Echvi_1973 0.38 +1.1
2,325,982 - Echvi_1973 0.39 +2.5
2,326,003 + Echvi_1973 0.41 +0.2
2,326,039 + Echvi_1973 0.45 -0.2
2,326,042 + Echvi_1973 0.45 -0.7
2,326,043 - Echvi_1973 0.45 +2.0
2,326,184 + Echvi_1973 0.59 +0.5
2,326,184 + Echvi_1973 0.59 +0.0
2,326,184 + Echvi_1973 0.59 -0.0
2,326,185 - Echvi_1973 0.59 +1.4
2,326,186 + Echvi_1973 0.59 +0.2
2,326,186 + Echvi_1973 0.59 -0.0
2,326,205 - Echvi_1973 0.61 +2.6
2,326,205 - Echvi_1973 0.61 +1.9
2,326,247 + Echvi_1973 0.65 -1.2
2,326,247 + Echvi_1973 0.65 -2.0
2,326,248 - Echvi_1973 0.65 +2.1
2,326,286 + Echvi_1973 0.69 +0.3
2,326,286 + Echvi_1973 0.69 +0.3
2,326,287 - Echvi_1973 0.69 +2.5
2,326,290 - Echvi_1973 0.69 +3.0
2,326,290 - Echvi_1973 0.69 +2.1
2,326,290 - Echvi_1973 0.69 +2.3
2,326,310 + Echvi_1973 0.71 -0.7
2,326,311 - Echvi_1973 0.71 +0.1
2,326,314 - Echvi_1973 0.71 +2.5
2,326,363 + Echvi_1973 0.76 +0.1
2,326,363 + Echvi_1973 0.76 -0.2
2,326,414 + Echvi_1973 0.81 -0.2
2,326,414 + Echvi_1973 0.81 +2.1
2,326,415 - Echvi_1973 0.81 +3.0
2,326,419 + Echvi_1973 0.81 -0.8
2,326,420 - Echvi_1973 0.81 +3.7
2,326,420 - Echvi_1973 0.81 +0.9
2,326,466 + Echvi_1973 0.86 -0.4
2,326,467 - Echvi_1973 0.86 +1.6
2,326,467 - Echvi_1973 0.86 +2.2
2,326,467 - Echvi_1973 0.86 +1.8
2,326,478 + Echvi_1973 0.87 -1.1
2,326,486 + Echvi_1973 0.88 -0.9
2,326,487 - Echvi_1973 0.88 +3.1
2,326,523 + -1.2
2,326,524 - +2.1
2,326,671 + -0.2
2,326,671 + -1.4
2,326,672 - +1.9
2,326,675 - +1.6
2,326,679 - +2.0
2,326,724 + -0.7
2,326,740 + +0.4
2,326,758 - -0.5
2,326,832 + Echvi_1974 0.21 -1.1
2,326,832 + Echvi_1974 0.21 -0.3
2,326,833 - Echvi_1974 0.22 -0.4
2,326,874 + Echvi_1974 0.28 +2.1
2,326,874 + Echvi_1974 0.28 -0.1
2,326,874 + Echvi_1974 0.28 -1.2
2,326,874 + Echvi_1974 0.28 +0.8
2,326,874 + Echvi_1974 0.28 -0.3
2,326,874 + Echvi_1974 0.28 -0.0
2,326,874 + Echvi_1974 0.28 -0.4
2,326,875 - Echvi_1974 0.29 -0.6
2,326,875 - Echvi_1974 0.29 +0.3
2,326,875 - Echvi_1974 0.29 +0.3
2,326,875 - Echvi_1974 0.29 +0.9
2,326,875 - Echvi_1974 0.29 -0.4
2,326,875 - Echvi_1974 0.29 -0.5
2,326,876 + Echvi_1974 0.29 -0.2
2,326,876 + Echvi_1974 0.29 +1.3
2,326,877 - Echvi_1974 0.29 -0.2
2,326,877 - Echvi_1974 0.29 -1.1
2,326,877 - Echvi_1974 0.29 -0.7
2,326,877 - Echvi_1974 0.29 -1.0
2,326,877 - Echvi_1974 0.29 -1.0
2,326,877 - Echvi_1974 0.29 -1.5
2,326,877 - Echvi_1974 0.29 -0.2
2,326,877 - Echvi_1974 0.29 -1.1
2,326,878 + Echvi_1974 0.29 +0.0
2,326,879 - Echvi_1974 0.29 +1.1
2,326,897 + Echvi_1974 0.32 +0.0
2,326,898 - Echvi_1974 0.33 -0.4
2,326,947 - Echvi_1974 0.41 -1.5
2,326,996 + Echvi_1974 0.49 +0.9
2,326,996 + Echvi_1974 0.49 -1.6
2,326,997 - Echvi_1974 0.49 +0.1
2,326,997 - Echvi_1974 0.49 +0.2
2,326,999 + Echvi_1974 0.49 -0.7
2,327,081 + Echvi_1974 0.63 -2.7
2,327,082 - Echvi_1974 0.63 +0.1
2,327,133 - Echvi_1974 0.72 -0.4
2,327,157 - Echvi_1974 0.76 -0.1
2,327,183 + Echvi_1974 0.80 -0.8
2,327,183 + Echvi_1974 0.80 +0.7
2,327,266 - -0.2
2,327,266 - -0.9
2,327,278 + -0.8
2,327,284 + +0.4
2,327,285 - -1.8
2,327,285 - -1.2
2,327,303 - -1.0
2,327,309 + +0.8
2,327,343 - +0.3
2,327,374 - +0.1
2,327,381 - -0.2
2,327,390 + -0.5
2,327,390 + +0.4
2,327,391 - -1.5
2,327,394 + -1.0
2,327,394 + -0.2
2,327,394 + +0.5
2,327,394 + -0.5
2,327,394 + -0.8
2,327,399 + -0.6
2,327,412 + -0.9
2,327,455 + +0.0
2,327,478 + +0.1
2,327,533 + Echvi_1975 0.22 -0.1
2,327,534 - Echvi_1975 0.22 +0.6
2,327,534 - Echvi_1975 0.22 +0.2
2,327,534 - Echvi_1975 0.22 +0.7
2,327,564 - Echvi_1975 0.29 -1.6
2,327,596 - Echvi_1975 0.37 +0.2

Or see this region's nucleotide sequence