Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1875 and Echvi_1876 are separated by 116 nucleotides Echvi_1876 and Echvi_1877 are separated by 110 nucleotides Echvi_1877 and Echvi_1878 overlap by 1 nucleotides
Echvi_1875: Echvi_1875 - xylulokinase (EC 2.7.1.17) (from data) , at 2,201,326 to 2,202,816
_1875
Echvi_1876: Echvi_1876 - Xylose isomerase (EC 5.3.1.5) (from data) , at 2,202,933 to 2,204,246
_1876
Echvi_1877: Echvi_1877 - hypothetical protein, at 2,204,357 to 2,204,467
_1877
Echvi_1878: Echvi_1878 - Beta-xylosidase, at 2,204,467 to 2,205,591
_1878
Position (kb)
2202
2203
2204
2205 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2201.934 kb on + strand, within Echvi_1875 at 2201.991 kb on - strand, within Echvi_1875 at 2202.011 kb on + strand, within Echvi_1875 at 2202.011 kb on + strand, within Echvi_1875 at 2202.044 kb on - strand, within Echvi_1875 at 2202.161 kb on - strand, within Echvi_1875 at 2202.204 kb on + strand, within Echvi_1875 at 2202.205 kb on - strand, within Echvi_1875 at 2202.441 kb on + strand, within Echvi_1875 at 2202.442 kb on - strand, within Echvi_1875 at 2202.510 kb on + strand, within Echvi_1875 at 2202.511 kb on - strand, within Echvi_1875 at 2202.567 kb on + strand, within Echvi_1875 at 2202.567 kb on + strand, within Echvi_1875 at 2202.567 kb on + strand, within Echvi_1875 at 2202.568 kb on - strand, within Echvi_1875 at 2202.576 kb on + strand, within Echvi_1875 at 2202.768 kb on + strand at 2202.768 kb on + strand at 2202.801 kb on - strand at 2202.841 kb on - strand at 2202.851 kb on + strand at 2202.852 kb on - strand at 2202.852 kb on - strand at 2202.896 kb on + strand at 2202.905 kb on - strand at 2202.915 kb on + strand at 2202.915 kb on + strand at 2202.915 kb on + strand at 2202.915 kb on + strand at 2202.916 kb on - strand at 2202.920 kb on - strand at 2202.927 kb on + strand at 2202.927 kb on + strand at 2202.929 kb on + strand at 2202.929 kb on + strand at 2202.930 kb on - strand at 2202.930 kb on - strand at 2202.958 kb on + strand at 2203.008 kb on - strand at 2203.008 kb on - strand at 2203.031 kb on - strand at 2203.178 kb on + strand, within Echvi_1876 at 2203.224 kb on + strand, within Echvi_1876 at 2203.225 kb on - strand, within Echvi_1876 at 2203.225 kb on - strand, within Echvi_1876 at 2203.225 kb on - strand, within Echvi_1876 at 2203.227 kb on + strand, within Echvi_1876 at 2203.228 kb on - strand, within Echvi_1876 at 2203.308 kb on + strand, within Echvi_1876 at 2203.309 kb on - strand, within Echvi_1876 at 2203.327 kb on + strand, within Echvi_1876 at 2203.366 kb on + strand, within Echvi_1876 at 2203.366 kb on + strand, within Echvi_1876 at 2203.367 kb on - strand, within Echvi_1876 at 2203.367 kb on - strand, within Echvi_1876 at 2203.385 kb on + strand, within Echvi_1876 at 2203.386 kb on - strand, within Echvi_1876 at 2203.515 kb on + strand, within Echvi_1876 at 2203.515 kb on + strand, within Echvi_1876 at 2203.516 kb on - strand, within Echvi_1876 at 2203.610 kb on + strand, within Echvi_1876 at 2203.663 kb on - strand, within Echvi_1876 at 2203.668 kb on + strand, within Echvi_1876 at 2203.669 kb on - strand, within Echvi_1876 at 2203.766 kb on + strand, within Echvi_1876 at 2203.766 kb on + strand, within Echvi_1876 at 2203.817 kb on + strand, within Echvi_1876 at 2203.857 kb on - strand, within Echvi_1876 at 2204.012 kb on + strand, within Echvi_1876 at 2204.012 kb on + strand, within Echvi_1876 at 2204.013 kb on - strand, within Echvi_1876 at 2204.158 kb on + strand at 2204.158 kb on + strand at 2204.158 kb on + strand at 2204.217 kb on + strand at 2204.217 kb on + strand at 2204.229 kb on - strand at 2204.229 kb on - strand at 2204.239 kb on - strand at 2204.239 kb on - strand at 2204.239 kb on - strand at 2204.240 kb on + strand at 2204.241 kb on - strand at 2204.281 kb on + strand at 2204.282 kb on - strand at 2204.337 kb on + strand at 2204.338 kb on - strand at 2204.390 kb on - strand, within Echvi_1877 at 2204.460 kb on + strand at 2204.489 kb on - strand at 2204.518 kb on - strand at 2204.611 kb on + strand, within Echvi_1878 at 2204.612 kb on - strand, within Echvi_1878 at 2204.612 kb on - strand, within Echvi_1878 at 2204.615 kb on - strand, within Echvi_1878 at 2204.651 kb on - strand, within Echvi_1878 at 2204.651 kb on - strand, within Echvi_1878 at 2204.666 kb on + strand, within Echvi_1878 at 2204.667 kb on - strand, within Echvi_1878 at 2204.682 kb on - strand, within Echvi_1878 at 2204.702 kb on + strand, within Echvi_1878 at 2204.709 kb on + strand, within Echvi_1878 at 2204.709 kb on + strand, within Echvi_1878 at 2204.728 kb on - strand, within Echvi_1878 at 2204.733 kb on - strand, within Echvi_1878 at 2204.741 kb on + strand, within Echvi_1878 at 2204.741 kb on + strand, within Echvi_1878 at 2204.741 kb on + strand, within Echvi_1878 at 2204.742 kb on - strand, within Echvi_1878 at 2204.742 kb on - strand, within Echvi_1878 at 2204.742 kb on - strand, within Echvi_1878 at 2204.742 kb on - strand, within Echvi_1878 at 2204.742 kb on - strand, within Echvi_1878 at 2204.745 kb on - strand, within Echvi_1878 at 2204.764 kb on + strand, within Echvi_1878 at 2204.764 kb on + strand, within Echvi_1878 at 2204.765 kb on - strand, within Echvi_1878 at 2204.765 kb on - strand, within Echvi_1878 at 2204.808 kb on + strand, within Echvi_1878 at 2204.811 kb on + strand, within Echvi_1878 at 2204.812 kb on - strand, within Echvi_1878 at 2204.812 kb on - strand, within Echvi_1878 at 2204.812 kb on - strand, within Echvi_1878 at 2204.830 kb on + strand, within Echvi_1878 at 2204.831 kb on - strand, within Echvi_1878 at 2205.016 kb on - strand, within Echvi_1878 at 2205.017 kb on + strand, within Echvi_1878 at 2205.176 kb on + strand, within Echvi_1878 at 2205.176 kb on + strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.177 kb on - strand, within Echvi_1878 at 2205.242 kb on - strand, within Echvi_1878
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 2,201,934 + Echvi_1875 0.41 +0.7 2,201,991 - Echvi_1875 0.45 +0.4 2,202,011 + Echvi_1875 0.46 +0.4 2,202,011 + Echvi_1875 0.46 +0.1 2,202,044 - Echvi_1875 0.48 -0.7 2,202,161 - Echvi_1875 0.56 +0.3 2,202,204 + Echvi_1875 0.59 +0.4 2,202,205 - Echvi_1875 0.59 +1.0 2,202,441 + Echvi_1875 0.75 +0.1 2,202,442 - Echvi_1875 0.75 -0.2 2,202,510 + Echvi_1875 0.79 +0.8 2,202,511 - Echvi_1875 0.79 +0.1 2,202,567 + Echvi_1875 0.83 +0.2 2,202,567 + Echvi_1875 0.83 +2.6 2,202,567 + Echvi_1875 0.83 -0.0 2,202,568 - Echvi_1875 0.83 +0.7 2,202,576 + Echvi_1875 0.84 +1.5 2,202,768 + -0.2 2,202,768 + +1.6 2,202,801 - +0.8 2,202,841 - +0.7 2,202,851 + +0.9 2,202,852 - -0.8 2,202,852 - +1.7 2,202,896 + +0.1 2,202,905 - +1.1 2,202,915 + +1.2 2,202,915 + +0.4 2,202,915 + +0.3 2,202,915 + +0.0 2,202,916 - +0.4 2,202,920 - -0.7 2,202,927 + -1.9 2,202,927 + +0.6 2,202,929 + +0.3 2,202,929 + -0.2 2,202,930 - +0.3 2,202,930 - -1.0 2,202,958 + -0.1 2,203,008 - -0.7 2,203,008 - -0.2 2,203,031 - -0.2 2,203,178 + Echvi_1876 0.19 -0.0 2,203,224 + Echvi_1876 0.22 +4.3 2,203,225 - Echvi_1876 0.22 -0.4 2,203,225 - Echvi_1876 0.22 +1.1 2,203,225 - Echvi_1876 0.22 +0.4 2,203,227 + Echvi_1876 0.22 -0.0 2,203,228 - Echvi_1876 0.22 -0.8 2,203,308 + Echvi_1876 0.29 -0.3 2,203,309 - Echvi_1876 0.29 -0.2 2,203,327 + Echvi_1876 0.30 +0.4 2,203,366 + Echvi_1876 0.33 -0.2 2,203,366 + Echvi_1876 0.33 +0.7 2,203,367 - Echvi_1876 0.33 +1.7 2,203,367 - Echvi_1876 0.33 -2.2 2,203,385 + Echvi_1876 0.34 -0.9 2,203,386 - Echvi_1876 0.34 -1.0 2,203,515 + Echvi_1876 0.44 +0.4 2,203,515 + Echvi_1876 0.44 +0.3 2,203,516 - Echvi_1876 0.44 +0.1 2,203,610 + Echvi_1876 0.52 +0.9 2,203,663 - Echvi_1876 0.56 +0.1 2,203,668 + Echvi_1876 0.56 -0.9 2,203,669 - Echvi_1876 0.56 +0.3 2,203,766 + Echvi_1876 0.63 +0.8 2,203,766 + Echvi_1876 0.63 +0.5 2,203,817 + Echvi_1876 0.67 +2.6 2,203,857 - Echvi_1876 0.70 +0.3 2,204,012 + Echvi_1876 0.82 +1.4 2,204,012 + Echvi_1876 0.82 +0.2 2,204,013 - Echvi_1876 0.82 +1.3 2,204,158 + +1.7 2,204,158 + -0.4 2,204,158 + -1.3 2,204,217 + +0.6 2,204,217 + -0.7 2,204,229 - -1.1 2,204,229 - -0.1 2,204,239 - -1.3 2,204,239 - +0.3 2,204,239 - +0.0 2,204,240 + +0.8 2,204,241 - +0.1 2,204,281 + -0.4 2,204,282 - -0.4 2,204,337 + -1.3 2,204,338 - -0.1 2,204,390 - Echvi_1877 0.30 +1.4 2,204,460 + +0.6 2,204,489 - +1.3 2,204,518 - +1.0 2,204,611 + Echvi_1878 0.13 -1.0 2,204,612 - Echvi_1878 0.13 +0.3 2,204,612 - Echvi_1878 0.13 +0.4 2,204,615 - Echvi_1878 0.13 +0.6 2,204,651 - Echvi_1878 0.16 -0.9 2,204,651 - Echvi_1878 0.16 -0.7 2,204,666 + Echvi_1878 0.18 +0.3 2,204,667 - Echvi_1878 0.18 -0.2 2,204,682 - Echvi_1878 0.19 -0.7 2,204,702 + Echvi_1878 0.21 -0.7 2,204,709 + Echvi_1878 0.22 +0.1 2,204,709 + Echvi_1878 0.22 +0.8 2,204,728 - Echvi_1878 0.23 +1.0 2,204,733 - Echvi_1878 0.24 +0.9 2,204,741 + Echvi_1878 0.24 -0.3 2,204,741 + Echvi_1878 0.24 -1.2 2,204,741 + Echvi_1878 0.24 -0.1 2,204,742 - Echvi_1878 0.24 -0.4 2,204,742 - Echvi_1878 0.24 +0.1 2,204,742 - Echvi_1878 0.24 -0.0 2,204,742 - Echvi_1878 0.24 +0.6 2,204,742 - Echvi_1878 0.24 -0.1 2,204,745 - Echvi_1878 0.25 +0.3 2,204,764 + Echvi_1878 0.26 +1.1 2,204,764 + Echvi_1878 0.26 -0.9 2,204,765 - Echvi_1878 0.26 -1.3 2,204,765 - Echvi_1878 0.26 -1.2 2,204,808 + Echvi_1878 0.30 +2.1 2,204,811 + Echvi_1878 0.31 +0.5 2,204,812 - Echvi_1878 0.31 +0.3 2,204,812 - Echvi_1878 0.31 -2.1 2,204,812 - Echvi_1878 0.31 +2.5 2,204,830 + Echvi_1878 0.32 +1.0 2,204,831 - Echvi_1878 0.32 +0.4 2,205,016 - Echvi_1878 0.49 +0.8 2,205,017 + Echvi_1878 0.49 +0.1 2,205,176 + Echvi_1878 0.63 +0.3 2,205,176 + Echvi_1878 0.63 +2.4 2,205,177 - Echvi_1878 0.63 +1.4 2,205,177 - Echvi_1878 0.63 +0.5 2,205,177 - Echvi_1878 0.63 -0.7 2,205,177 - Echvi_1878 0.63 +1.6 2,205,242 - Echvi_1878 0.69 -0.2
Or see this region's nucleotide sequence