Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1363

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1362 and Echvi_1363 overlap by 4 nucleotidesEchvi_1363 and Echvi_1364 overlap by 4 nucleotidesEchvi_1364 and Echvi_1365 are separated by 11 nucleotidesEchvi_1365 and Echvi_1366 are separated by 10 nucleotides Echvi_1362: Echvi_1362 - Bacteroides conjugation system ATPase, TraG family, at 1,567,398 to 1,569,860 _1362 Echvi_1363: Echvi_1363 - hypothetical protein, at 1,569,857 to 1,570,177 _1363 Echvi_1364: Echvi_1364 - hypothetical protein, at 1,570,174 to 1,570,626 _1364 Echvi_1365: Echvi_1365 - hypothetical protein, at 1,570,638 to 1,570,943 _1365 Echvi_1366: Echvi_1366 - hypothetical protein, at 1,570,954 to 1,571,367 _1366 Position (kb) 1569 1570 1571Strain fitness (log2 ratio) -2 -1 0 1 2at 1569.058 kb on + strand, within Echvi_1362at 1569.066 kb on - strand, within Echvi_1362at 1569.067 kb on + strand, within Echvi_1362at 1569.067 kb on + strand, within Echvi_1362at 1569.067 kb on + strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.068 kb on - strand, within Echvi_1362at 1569.071 kb on + strand, within Echvi_1362at 1569.072 kb on - strand, within Echvi_1362at 1569.072 kb on - strand, within Echvi_1362at 1569.072 kb on - strand, within Echvi_1362at 1569.072 kb on - strand, within Echvi_1362at 1569.072 kb on - strand, within Echvi_1362at 1569.109 kb on + strand, within Echvi_1362at 1569.142 kb on + strand, within Echvi_1362at 1569.142 kb on + strand, within Echvi_1362at 1569.217 kb on + strand, within Echvi_1362at 1569.218 kb on - strand, within Echvi_1362at 1569.218 kb on - strand, within Echvi_1362at 1569.218 kb on - strand, within Echvi_1362at 1569.218 kb on - strand, within Echvi_1362at 1569.221 kb on + strand, within Echvi_1362at 1569.333 kb on + strand, within Echvi_1362at 1569.333 kb on + strand, within Echvi_1362at 1569.333 kb on + strand, within Echvi_1362at 1569.333 kb on + strand, within Echvi_1362at 1569.334 kb on - strand, within Echvi_1362at 1569.334 kb on - strand, within Echvi_1362at 1569.334 kb on - strand, within Echvi_1362at 1569.335 kb on + strand, within Echvi_1362at 1569.335 kb on + strand, within Echvi_1362at 1569.335 kb on + strand, within Echvi_1362at 1569.335 kb on + strand, within Echvi_1362at 1569.335 kb on + strand, within Echvi_1362at 1569.335 kb on + strand, within Echvi_1362at 1569.336 kb on - strand, within Echvi_1362at 1569.336 kb on - strand, within Echvi_1362at 1569.336 kb on - strand, within Echvi_1362at 1569.336 kb on - strand, within Echvi_1362at 1569.336 kb on - strand, within Echvi_1362at 1569.606 kb on - strand, within Echvi_1362at 1569.606 kb on - strand, within Echvi_1362at 1569.862 kb on + strandat 1569.862 kb on + strandat 1569.863 kb on - strandat 1569.987 kb on + strand, within Echvi_1363at 1570.032 kb on + strand, within Echvi_1363at 1570.053 kb on + strand, within Echvi_1363at 1570.109 kb on - strand, within Echvi_1363at 1570.110 kb on + strand, within Echvi_1363at 1570.111 kb on - strand, within Echvi_1363at 1570.177 kb on + strandat 1570.310 kb on + strand, within Echvi_1364at 1570.424 kb on + strand, within Echvi_1364at 1570.424 kb on + strand, within Echvi_1364at 1570.562 kb on + strand, within Echvi_1364at 1570.562 kb on + strand, within Echvi_1364at 1570.641 kb on + strandat 1570.641 kb on + strandat 1570.641 kb on + strandat 1570.687 kb on - strand, within Echvi_1365at 1570.798 kb on + strand, within Echvi_1365at 1570.798 kb on + strand, within Echvi_1365at 1570.798 kb on + strand, within Echvi_1365at 1570.896 kb on + strand, within Echvi_1365at 1570.946 kb on + strandat 1571.028 kb on + strand, within Echvi_1366at 1571.073 kb on + strand, within Echvi_1366

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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1,569,058 + Echvi_1362 0.67 -0.2
1,569,066 - Echvi_1362 0.68 +1.7
1,569,067 + Echvi_1362 0.68 +0.1
1,569,067 + Echvi_1362 0.68 -0.5
1,569,067 + Echvi_1362 0.68 +1.5
1,569,068 - Echvi_1362 0.68 +0.5
1,569,068 - Echvi_1362 0.68 -0.0
1,569,068 - Echvi_1362 0.68 +0.8
1,569,068 - Echvi_1362 0.68 +0.4
1,569,068 - Echvi_1362 0.68 +1.4
1,569,068 - Echvi_1362 0.68 -1.5
1,569,068 - Echvi_1362 0.68 +0.1
1,569,068 - Echvi_1362 0.68 -0.2
1,569,068 - Echvi_1362 0.68 -0.3
1,569,071 + Echvi_1362 0.68 +0.3
1,569,072 - Echvi_1362 0.68 +1.1
1,569,072 - Echvi_1362 0.68 +0.6
1,569,072 - Echvi_1362 0.68 +0.4
1,569,072 - Echvi_1362 0.68 -1.1
1,569,072 - Echvi_1362 0.68 -0.4
1,569,109 + Echvi_1362 0.69 -0.7
1,569,142 + Echvi_1362 0.71 +0.0
1,569,142 + Echvi_1362 0.71 -0.4
1,569,217 + Echvi_1362 0.74 +2.3
1,569,218 - Echvi_1362 0.74 -0.1
1,569,218 - Echvi_1362 0.74 +0.6
1,569,218 - Echvi_1362 0.74 +2.6
1,569,218 - Echvi_1362 0.74 +0.0
1,569,221 + Echvi_1362 0.74 +0.5
1,569,333 + Echvi_1362 0.79 +0.1
1,569,333 + Echvi_1362 0.79 +1.3
1,569,333 + Echvi_1362 0.79 -0.2
1,569,333 + Echvi_1362 0.79 +0.9
1,569,334 - Echvi_1362 0.79 +1.8
1,569,334 - Echvi_1362 0.79 -0.7
1,569,334 - Echvi_1362 0.79 +0.7
1,569,335 + Echvi_1362 0.79 +0.2
1,569,335 + Echvi_1362 0.79 -0.1
1,569,335 + Echvi_1362 0.79 +1.9
1,569,335 + Echvi_1362 0.79 +1.8
1,569,335 + Echvi_1362 0.79 +1.4
1,569,335 + Echvi_1362 0.79 +1.0
1,569,336 - Echvi_1362 0.79 -0.2
1,569,336 - Echvi_1362 0.79 -0.6
1,569,336 - Echvi_1362 0.79 +0.7
1,569,336 - Echvi_1362 0.79 +1.8
1,569,336 - Echvi_1362 0.79 -0.3
1,569,606 - Echvi_1362 0.90 +0.9
1,569,606 - Echvi_1362 0.90 -0.4
1,569,862 + -0.1
1,569,862 + +0.4
1,569,863 - -2.3
1,569,987 + Echvi_1363 0.40 -1.7
1,570,032 + Echvi_1363 0.55 -0.9
1,570,053 + Echvi_1363 0.61 -0.0
1,570,109 - Echvi_1363 0.79 -1.4
1,570,110 + Echvi_1363 0.79 -0.4
1,570,111 - Echvi_1363 0.79 -1.1
1,570,177 + -2.2
1,570,310 + Echvi_1364 0.30 -1.3
1,570,424 + Echvi_1364 0.55 +0.1
1,570,424 + Echvi_1364 0.55 -0.7
1,570,562 + Echvi_1364 0.86 -0.7
1,570,562 + Echvi_1364 0.86 -0.3
1,570,641 + +0.3
1,570,641 + -0.1
1,570,641 + +1.0
1,570,687 - Echvi_1365 0.16 +0.3
1,570,798 + Echvi_1365 0.52 +2.5
1,570,798 + Echvi_1365 0.52 +0.1
1,570,798 + Echvi_1365 0.52 +0.7
1,570,896 + Echvi_1365 0.84 -1.7
1,570,946 + -0.6
1,571,028 + Echvi_1366 0.18 +0.3
1,571,073 + Echvi_1366 0.29 +2.6

Or see this region's nucleotide sequence