Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0873

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0872 and Echvi_0873 are separated by 270 nucleotidesEchvi_0873 and Echvi_0874 are separated by 219 nucleotidesEchvi_0874 and Echvi_0875 are separated by 47 nucleotides Echvi_0872: Echvi_0872 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 995,174 to 996,184 _0872 Echvi_0873: Echvi_0873 - Predicted carboxypeptidase, at 996,455 to 997,948 _0873 Echvi_0874: Echvi_0874 - Uncharacterized protein conserved in bacteria, at 998,168 to 998,764 _0874 Echvi_0875: Echvi_0875 - hypothetical protein, at 998,812 to 999,375 _0875 Position (kb) 996 997 998Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 995.489 kb on - strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.529 kb on + strand, within Echvi_0872at 995.600 kb on + strand, within Echvi_0872at 995.601 kb on - strand, within Echvi_0872at 995.613 kb on + strand, within Echvi_0872at 995.613 kb on + strand, within Echvi_0872at 995.614 kb on - strand, within Echvi_0872at 995.618 kb on - strand, within Echvi_0872at 995.655 kb on - strand, within Echvi_0872at 995.674 kb on + strand, within Echvi_0872at 995.674 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.732 kb on - strandat 995.733 kb on + strand, within Echvi_0872at 995.839 kb on - strand, within Echvi_0872at 995.845 kb on - strand, within Echvi_0872at 995.845 kb on - strand, within Echvi_0872at 995.869 kb on + strand, within Echvi_0872at 995.927 kb on + strand, within Echvi_0872at 995.928 kb on - strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.962 kb on + strand, within Echvi_0872at 996.036 kb on + strand, within Echvi_0872at 996.037 kb on - strand, within Echvi_0872at 996.052 kb on + strand, within Echvi_0872at 996.069 kb on + strand, within Echvi_0872at 996.093 kb on - strandat 996.137 kb on - strandat 996.143 kb on - strandat 996.143 kb on - strandat 996.170 kb on + strandat 996.214 kb on + strandat 996.215 kb on - strandat 996.220 kb on + strandat 996.220 kb on + strandat 996.221 kb on - strandat 996.266 kb on - strandat 996.327 kb on + strandat 996.353 kb on + strandat 996.354 kb on - strandat 996.408 kb on - strandat 996.435 kb on - strandat 996.435 kb on - strandat 996.486 kb on + strandat 996.504 kb on + strandat 996.596 kb on + strandat 996.731 kb on + strand, within Echvi_0873at 996.817 kb on + strand, within Echvi_0873at 996.818 kb on - strand, within Echvi_0873at 996.818 kb on - strand, within Echvi_0873at 996.846 kb on - strand, within Echvi_0873at 996.853 kb on + strand, within Echvi_0873at 996.855 kb on + strand, within Echvi_0873at 996.958 kb on - strand, within Echvi_0873at 997.062 kb on + strand, within Echvi_0873at 997.062 kb on + strand, within Echvi_0873at 997.062 kb on + strand, within Echvi_0873at 997.064 kb on + strand, within Echvi_0873at 997.065 kb on - strand, within Echvi_0873at 997.065 kb on - strand, within Echvi_0873at 997.067 kb on + strand, within Echvi_0873at 997.067 kb on + strand, within Echvi_0873at 997.067 kb on + strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.068 kb on - strand, within Echvi_0873at 997.069 kb on + strand, within Echvi_0873at 997.069 kb on + strand, within Echvi_0873at 997.070 kb on - strand, within Echvi_0873at 997.127 kb on + strand, within Echvi_0873at 997.128 kb on - strand, within Echvi_0873at 997.140 kb on + strand, within Echvi_0873at 997.141 kb on - strand, within Echvi_0873at 997.141 kb on - strand, within Echvi_0873at 997.226 kb on + strand, within Echvi_0873at 997.227 kb on - strand, within Echvi_0873at 997.328 kb on - strand, within Echvi_0873at 997.328 kb on - strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.335 kb on - strand, within Echvi_0873at 997.398 kb on - strand, within Echvi_0873at 997.421 kb on + strand, within Echvi_0873at 997.421 kb on + strand, within Echvi_0873at 997.447 kb on + strand, within Echvi_0873at 997.447 kb on + strand, within Echvi_0873at 997.447 kb on + strand, within Echvi_0873at 997.448 kb on - strandat 997.448 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.601 kb on + strand, within Echvi_0873at 997.604 kb on + strand, within Echvi_0873at 997.604 kb on + strand, within Echvi_0873at 997.605 kb on - strand, within Echvi_0873at 997.743 kb on + strand, within Echvi_0873at 997.744 kb on - strand, within Echvi_0873at 997.788 kb on + strand, within Echvi_0873at 997.984 kb on - strandat 997.984 kb on - strandat 998.074 kb on + strandat 998.112 kb on + strandat 998.160 kb on - strandat 998.222 kb on + strandat 998.223 kb on - strandat 998.297 kb on + strand, within Echvi_0874at 998.297 kb on + strand, within Echvi_0874at 998.298 kb on - strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.371 kb on - strand, within Echvi_0874at 998.504 kb on + strand, within Echvi_0874at 998.506 kb on + strand, within Echvi_0874at 998.507 kb on - strand, within Echvi_0874at 998.511 kb on - strand, within Echvi_0874at 998.663 kb on + strand, within Echvi_0874at 998.763 kb on - strandat 998.855 kb on + strandat 998.855 kb on + strandat 998.855 kb on + strandat 998.856 kb on - strandat 998.856 kb on - strandat 998.887 kb on + strand, within Echvi_0875at 998.931 kb on + strand, within Echvi_0875at 998.939 kb on + strand, within Echvi_0875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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995,489 - Echvi_0872 0.31 +1.4
995,518 + Echvi_0872 0.34 +0.7
995,518 + Echvi_0872 0.34 -1.4
995,518 + Echvi_0872 0.34 +0.5
995,529 + Echvi_0872 0.35 -1.2
995,600 + Echvi_0872 0.42 -1.0
995,601 - Echvi_0872 0.42 +0.3
995,613 + Echvi_0872 0.43 -2.6
995,613 + Echvi_0872 0.43 -0.9
995,614 - Echvi_0872 0.44 -0.3
995,618 - Echvi_0872 0.44 +1.1
995,655 - Echvi_0872 0.48 +0.0
995,674 + Echvi_0872 0.49 -0.5
995,674 + Echvi_0872 0.49 +0.5
995,731 + Echvi_0872 0.55 +0.7
995,731 + Echvi_0872 0.55 +2.0
995,731 + Echvi_0872 0.55 -0.3
995,731 + Echvi_0872 0.55 -0.2
995,732 - -0.0
995,733 + Echvi_0872 0.55 -1.9
995,839 - Echvi_0872 0.66 +0.4
995,845 - Echvi_0872 0.66 +0.8
995,845 - Echvi_0872 0.66 +1.1
995,869 + Echvi_0872 0.69 -0.3
995,927 + Echvi_0872 0.74 -0.2
995,928 - Echvi_0872 0.75 +1.0
995,935 + Echvi_0872 0.75 -0.3
995,935 + Echvi_0872 0.75 +0.3
995,935 + Echvi_0872 0.75 +0.8
995,935 + Echvi_0872 0.75 -0.3
995,936 - Echvi_0872 0.75 -0.8
995,936 - Echvi_0872 0.75 +1.3
995,936 - Echvi_0872 0.75 +1.0
995,962 + Echvi_0872 0.78 -0.2
996,036 + Echvi_0872 0.85 -1.9
996,037 - Echvi_0872 0.85 +0.4
996,052 + Echvi_0872 0.87 -0.5
996,069 + Echvi_0872 0.89 +0.3
996,093 - +0.5
996,137 - -0.7
996,143 - -0.3
996,143 - -0.2
996,170 + -1.3
996,214 + +1.3
996,215 - +0.3
996,220 + +0.5
996,220 + -1.3
996,221 - -0.5
996,266 - +0.9
996,327 + +0.3
996,353 + -0.9
996,354 - +0.6
996,408 - -1.6
996,435 - +0.7
996,435 - -0.5
996,486 + +0.6
996,504 + +1.3
996,596 + +1.3
996,731 + Echvi_0873 0.18 -0.8
996,817 + Echvi_0873 0.24 +0.7
996,818 - Echvi_0873 0.24 -0.8
996,818 - Echvi_0873 0.24 +1.6
996,846 - Echvi_0873 0.26 +0.1
996,853 + Echvi_0873 0.27 +0.7
996,855 + Echvi_0873 0.27 -0.2
996,958 - Echvi_0873 0.34 -0.4
997,062 + Echvi_0873 0.41 -0.7
997,062 + Echvi_0873 0.41 -0.2
997,062 + Echvi_0873 0.41 +1.5
997,064 + Echvi_0873 0.41 +0.1
997,065 - Echvi_0873 0.41 -1.8
997,065 - Echvi_0873 0.41 -0.0
997,067 + Echvi_0873 0.41 -0.0
997,067 + Echvi_0873 0.41 +1.1
997,067 + Echvi_0873 0.41 -0.2
997,068 - Echvi_0873 0.41 -0.3
997,068 - Echvi_0873 0.41 +1.4
997,068 - Echvi_0873 0.41 +0.5
997,068 - Echvi_0873 0.41 -1.8
997,069 + Echvi_0873 0.41 +2.8
997,069 + Echvi_0873 0.41 +1.0
997,070 - Echvi_0873 0.41 +0.8
997,127 + Echvi_0873 0.45 -0.4
997,128 - Echvi_0873 0.45 +0.6
997,140 + Echvi_0873 0.46 +0.4
997,141 - Echvi_0873 0.46 +1.3
997,141 - Echvi_0873 0.46 -1.0
997,226 + Echvi_0873 0.52 +0.9
997,227 - Echvi_0873 0.52 +0.3
997,328 - Echvi_0873 0.58 +0.7
997,328 - Echvi_0873 0.58 -0.3
997,334 + Echvi_0873 0.59 +1.2
997,334 + Echvi_0873 0.59 +1.9
997,334 + Echvi_0873 0.59 +0.5
997,334 + Echvi_0873 0.59 +1.3
997,335 - Echvi_0873 0.59 -0.5
997,398 - Echvi_0873 0.63 +1.0
997,421 + Echvi_0873 0.65 -0.7
997,421 + Echvi_0873 0.65 +1.5
997,447 + Echvi_0873 0.66 -0.1
997,447 + Echvi_0873 0.66 -0.8
997,447 + Echvi_0873 0.66 +0.7
997,448 - +4.6
997,448 - Echvi_0873 0.66 +0.3
997,557 - Echvi_0873 0.74 -0.5
997,557 - Echvi_0873 0.74 +0.4
997,557 - Echvi_0873 0.74 +0.4
997,557 - Echvi_0873 0.74 -0.0
997,557 - Echvi_0873 0.74 +0.8
997,557 - Echvi_0873 0.74 -1.5
997,601 + Echvi_0873 0.77 +1.4
997,604 + Echvi_0873 0.77 -0.1
997,604 + Echvi_0873 0.77 +0.1
997,605 - Echvi_0873 0.77 -1.0
997,743 + Echvi_0873 0.86 -0.4
997,744 - Echvi_0873 0.86 -0.3
997,788 + Echvi_0873 0.89 +0.6
997,984 - +1.9
997,984 - -0.2
998,074 + -0.2
998,112 + +0.3
998,160 - -0.2
998,222 + +2.0
998,223 - +1.1
998,297 + Echvi_0874 0.22 -1.3
998,297 + Echvi_0874 0.22 -1.8
998,298 - Echvi_0874 0.22 -0.2
998,337 + Echvi_0874 0.28 +1.2
998,337 + Echvi_0874 0.28 +0.9
998,337 + Echvi_0874 0.28 -0.4
998,338 - Echvi_0874 0.28 +0.2
998,338 - Echvi_0874 0.28 -0.3
998,338 - Echvi_0874 0.28 -0.9
998,371 - Echvi_0874 0.34 -0.3
998,504 + Echvi_0874 0.56 -1.9
998,506 + Echvi_0874 0.57 +0.2
998,507 - Echvi_0874 0.57 -0.3
998,511 - Echvi_0874 0.57 +1.6
998,663 + Echvi_0874 0.83 -0.5
998,763 - +1.3
998,855 + -0.4
998,855 + +0.3
998,855 + +0.7
998,856 - +0.4
998,856 - +0.5
998,887 + Echvi_0875 0.13 +0.3
998,931 + Echvi_0875 0.21 +0.5
998,939 + Echvi_0875 0.23 +1.4

Or see this region's nucleotide sequence