Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0857

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0856 and Echvi_0857 are separated by 11 nucleotidesEchvi_0857 and Echvi_0858 overlap by 17 nucleotidesEchvi_0858 and Echvi_0859 are separated by 167 nucleotides Echvi_0856: Echvi_0856 - hypothetical protein, at 977,614 to 978,918 _0856 Echvi_0857: Echvi_0857 - hypothetical protein, at 978,930 to 980,213 _0857 Echvi_0858: Echvi_0858 - pantothenate kinase, type III, at 980,197 to 980,925 _0858 Echvi_0859: Echvi_0859 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 981,093 to 982,169 _0859 Position (kb) 978 979 980 981Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.134 kb on - strand, within Echvi_0857at 979.134 kb on - strand, within Echvi_0857at 979.138 kb on + strand, within Echvi_0857at 979.138 kb on + strand, within Echvi_0857at 979.205 kb on - strand, within Echvi_0857at 979.209 kb on - strand, within Echvi_0857at 979.230 kb on + strand, within Echvi_0857at 979.286 kb on - strand, within Echvi_0857at 979.383 kb on - strand, within Echvi_0857at 979.445 kb on + strand, within Echvi_0857at 979.446 kb on - strand, within Echvi_0857at 979.532 kb on + strand, within Echvi_0857at 979.536 kb on + strand, within Echvi_0857at 979.537 kb on - strand, within Echvi_0857at 979.591 kb on + strand, within Echvi_0857at 979.619 kb on + strand, within Echvi_0857at 979.619 kb on + strand, within Echvi_0857at 979.619 kb on + strand, within Echvi_0857at 979.620 kb on - strand, within Echvi_0857at 979.620 kb on - strand, within Echvi_0857at 979.620 kb on - strand, within Echvi_0857at 979.620 kb on - strand, within Echvi_0857at 979.640 kb on + strand, within Echvi_0857at 979.673 kb on + strand, within Echvi_0857at 979.698 kb on - strand, within Echvi_0857at 979.698 kb on - strand, within Echvi_0857at 979.728 kb on + strand, within Echvi_0857at 979.729 kb on - strand, within Echvi_0857at 979.732 kb on + strand, within Echvi_0857at 979.732 kb on + strand, within Echvi_0857at 979.767 kb on - strand, within Echvi_0857at 979.819 kb on + strand, within Echvi_0857at 979.819 kb on + strand, within Echvi_0857at 979.829 kb on + strand, within Echvi_0857at 979.829 kb on + strand, within Echvi_0857at 979.829 kb on + strand, within Echvi_0857at 979.830 kb on - strand, within Echvi_0857at 979.830 kb on - strand, within Echvi_0857at 979.830 kb on - strand, within Echvi_0857at 979.830 kb on - strand, within Echvi_0857at 979.830 kb on - strand, within Echvi_0857at 979.834 kb on - strand, within Echvi_0857at 979.834 kb on - strand, within Echvi_0857at 979.834 kb on - strand, within Echvi_0857at 979.888 kb on - strand, within Echvi_0857at 979.892 kb on + strand, within Echvi_0857at 979.898 kb on - strand, within Echvi_0857at 979.898 kb on - strand, within Echvi_0857at 979.898 kb on - strand, within Echvi_0857at 979.901 kb on + strand, within Echvi_0857at 979.901 kb on + strand, within Echvi_0857at 979.902 kb on - strand, within Echvi_0857at 979.959 kb on - strand, within Echvi_0857at 979.960 kb on + strand, within Echvi_0857at 979.961 kb on - strand, within Echvi_0857at 979.964 kb on + strand, within Echvi_0857at 979.992 kb on - strand, within Echvi_0857at 980.045 kb on - strand, within Echvi_0857at 980.048 kb on + strand, within Echvi_0857at 980.049 kb on - strand, within Echvi_0857at 980.049 kb on - strand, within Echvi_0857at 980.049 kb on - strand, within Echvi_0857at 980.051 kb on + strand, within Echvi_0857at 980.052 kb on - strand, within Echvi_0857at 980.113 kb on - strandat 980.120 kb on + strandat 980.121 kb on - strandat 980.123 kb on - strandat 980.126 kb on + strandat 980.126 kb on + strandat 980.126 kb on + strandat 980.126 kb on + strandat 980.127 kb on - strandat 980.127 kb on - strandat 980.127 kb on - strandat 980.160 kb on + strandat 980.160 kb on + strandat 980.161 kb on - strandat 980.188 kb on - strandat 980.188 kb on - strandat 980.188 kb on - strandat 980.199 kb on - strandat 980.206 kb on - strandat 980.950 kb on - strandat 980.955 kb on + strandat 980.955 kb on + strandat 980.956 kb on - strandat 980.962 kb on + strandat 980.962 kb on + strandat 980.962 kb on + strandat 980.967 kb on - strandat 981.040 kb on + strandat 981.040 kb on + strandat 981.041 kb on - strandat 981.041 kb on - strandat 981.061 kb on + strandat 981.061 kb on + strandat 981.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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979,134 - Echvi_0857 0.16 -0.5
979,134 - Echvi_0857 0.16 +0.1
979,138 + Echvi_0857 0.16 +0.3
979,138 + Echvi_0857 0.16 -1.3
979,205 - Echvi_0857 0.21 +0.6
979,209 - Echvi_0857 0.22 -0.3
979,230 + Echvi_0857 0.23 +0.7
979,286 - Echvi_0857 0.28 -1.9
979,383 - Echvi_0857 0.35 -1.5
979,445 + Echvi_0857 0.40 -0.5
979,446 - Echvi_0857 0.40 -1.1
979,532 + Echvi_0857 0.47 -2.1
979,536 + Echvi_0857 0.47 -2.6
979,537 - Echvi_0857 0.47 -1.4
979,591 + Echvi_0857 0.51 +0.7
979,619 + Echvi_0857 0.54 -1.3
979,619 + Echvi_0857 0.54 -0.4
979,619 + Echvi_0857 0.54 -0.8
979,620 - Echvi_0857 0.54 +0.1
979,620 - Echvi_0857 0.54 +0.1
979,620 - Echvi_0857 0.54 -0.6
979,620 - Echvi_0857 0.54 -2.2
979,640 + Echvi_0857 0.55 -1.2
979,673 + Echvi_0857 0.58 -0.7
979,698 - Echvi_0857 0.60 -1.6
979,698 - Echvi_0857 0.60 -1.3
979,728 + Echvi_0857 0.62 -2.0
979,729 - Echvi_0857 0.62 -1.2
979,732 + Echvi_0857 0.62 -1.7
979,732 + Echvi_0857 0.62 -1.7
979,767 - Echvi_0857 0.65 +2.3
979,819 + Echvi_0857 0.69 +1.3
979,819 + Echvi_0857 0.69 -2.2
979,829 + Echvi_0857 0.70 -1.5
979,829 + Echvi_0857 0.70 +0.4
979,829 + Echvi_0857 0.70 -0.0
979,830 - Echvi_0857 0.70 -2.0
979,830 - Echvi_0857 0.70 -1.7
979,830 - Echvi_0857 0.70 -0.0
979,830 - Echvi_0857 0.70 +0.3
979,830 - Echvi_0857 0.70 -0.3
979,834 - Echvi_0857 0.70 +0.2
979,834 - Echvi_0857 0.70 -0.7
979,834 - Echvi_0857 0.70 -2.0
979,888 - Echvi_0857 0.75 +0.7
979,892 + Echvi_0857 0.75 -2.3
979,898 - Echvi_0857 0.75 -2.6
979,898 - Echvi_0857 0.75 -2.4
979,898 - Echvi_0857 0.75 -3.3
979,901 + Echvi_0857 0.76 +0.9
979,901 + Echvi_0857 0.76 -0.8
979,902 - Echvi_0857 0.76 -1.1
979,959 - Echvi_0857 0.80 -0.2
979,960 + Echvi_0857 0.80 -2.8
979,961 - Echvi_0857 0.80 -1.6
979,964 + Echvi_0857 0.81 -0.9
979,992 - Echvi_0857 0.83 -2.5
980,045 - Echvi_0857 0.87 -1.4
980,048 + Echvi_0857 0.87 -2.8
980,049 - Echvi_0857 0.87 -1.2
980,049 - Echvi_0857 0.87 -1.2
980,049 - Echvi_0857 0.87 -0.6
980,051 + Echvi_0857 0.87 +0.5
980,052 - Echvi_0857 0.87 -1.3
980,113 - -0.4
980,120 + +1.7
980,121 - -0.9
980,123 - -1.9
980,126 + -3.1
980,126 + -1.9
980,126 + +0.1
980,126 + +0.3
980,127 - -1.3
980,127 - -1.8
980,127 - -1.2
980,160 + -2.8
980,160 + -0.9
980,161 - -1.7
980,188 - -1.8
980,188 - -1.2
980,188 - -1.8
980,199 - -1.6
980,206 - -1.4
980,950 - -0.5
980,955 + +2.1
980,955 + +0.3
980,956 - +0.6
980,962 + +0.3
980,962 + -1.0
980,962 + -1.9
980,967 - +0.7
981,040 + -1.6
981,040 + -0.5
981,041 - +0.5
981,041 - +0.4
981,061 + -0.5
981,061 + -0.5
981,170 + -2.2

Or see this region's nucleotide sequence