Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0810

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0810 and Echvi_0811 are separated by 106 nucleotides Echvi_0810: Echvi_0810 - hypothetical protein, at 927,886 to 929,559 _0810 Echvi_0811: Echvi_0811 - hypothetical protein, at 929,666 to 931,603 _0811 Position (kb) 927 928 929 930Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 926.919 kb on + strandat 926.926 kb on + strandat 926.962 kb on + strandat 926.978 kb on - strandat 927.202 kb on - strandat 927.202 kb on - strandat 927.202 kb on - strandat 927.204 kb on - strandat 927.204 kb on - strandat 927.373 kb on + strandat 927.445 kb on + strandat 927.446 kb on - strandat 927.446 kb on - strandat 927.451 kb on - strandat 927.589 kb on - strandat 927.606 kb on - strandat 927.607 kb on + strandat 927.643 kb on - strandat 927.643 kb on - strandat 927.645 kb on - strandat 927.645 kb on - strandat 927.790 kb on + strandat 927.829 kb on + strandat 927.829 kb on + strandat 927.855 kb on - strandat 927.872 kb on + strandat 927.875 kb on + strandat 927.875 kb on + strandat 927.921 kb on + strandat 927.945 kb on - strandat 927.979 kb on - strandat 928.060 kb on + strand, within Echvi_0810at 928.078 kb on + strand, within Echvi_0810at 928.078 kb on + strand, within Echvi_0810at 928.078 kb on + strand, within Echvi_0810at 928.078 kb on + strand, within Echvi_0810at 928.078 kb on + strand, within Echvi_0810at 928.078 kb on + strand, within Echvi_0810at 928.078 kb on + strandat 928.078 kb on + strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.079 kb on - strand, within Echvi_0810at 928.110 kb on - strand, within Echvi_0810at 928.133 kb on + strand, within Echvi_0810at 928.133 kb on + strand, within Echvi_0810at 928.134 kb on - strand, within Echvi_0810at 928.134 kb on - strand, within Echvi_0810at 928.157 kb on - strand, within Echvi_0810at 928.175 kb on + strand, within Echvi_0810at 928.335 kb on - strand, within Echvi_0810at 928.351 kb on - strand, within Echvi_0810at 928.351 kb on - strand, within Echvi_0810at 928.353 kb on + strand, within Echvi_0810at 928.353 kb on + strand, within Echvi_0810at 928.359 kb on - strand, within Echvi_0810at 928.359 kb on - strand, within Echvi_0810at 928.359 kb on - strand, within Echvi_0810at 928.400 kb on + strand, within Echvi_0810at 928.400 kb on + strand, within Echvi_0810at 928.407 kb on - strand, within Echvi_0810at 928.449 kb on + strand, within Echvi_0810at 928.466 kb on + strand, within Echvi_0810at 928.467 kb on - strand, within Echvi_0810at 928.473 kb on - strand, within Echvi_0810at 928.473 kb on - strand, within Echvi_0810at 928.523 kb on + strand, within Echvi_0810at 928.523 kb on + strand, within Echvi_0810at 928.523 kb on + strand, within Echvi_0810at 928.547 kb on + strand, within Echvi_0810at 928.547 kb on + strand, within Echvi_0810at 928.565 kb on + strand, within Echvi_0810at 928.587 kb on + strand, within Echvi_0810at 928.617 kb on - strand, within Echvi_0810at 928.623 kb on + strand, within Echvi_0810at 928.653 kb on + strand, within Echvi_0810at 928.668 kb on + strand, within Echvi_0810at 928.669 kb on - strand, within Echvi_0810at 928.677 kb on + strand, within Echvi_0810at 928.716 kb on - strand, within Echvi_0810at 928.788 kb on + strand, within Echvi_0810at 928.789 kb on - strand, within Echvi_0810at 928.801 kb on - strand, within Echvi_0810at 928.807 kb on + strand, within Echvi_0810at 928.808 kb on - strand, within Echvi_0810at 928.830 kb on - strand, within Echvi_0810at 928.857 kb on + strand, within Echvi_0810at 928.890 kb on + strand, within Echvi_0810at 928.890 kb on + strand, within Echvi_0810at 928.891 kb on - strand, within Echvi_0810at 928.895 kb on + strand, within Echvi_0810at 928.896 kb on - strand, within Echvi_0810at 928.979 kb on + strand, within Echvi_0810at 928.979 kb on + strand, within Echvi_0810at 928.982 kb on + strand, within Echvi_0810at 928.983 kb on - strand, within Echvi_0810at 928.983 kb on - strand, within Echvi_0810at 928.983 kb on - strand, within Echvi_0810at 928.989 kb on - strand, within Echvi_0810at 929.016 kb on + strand, within Echvi_0810at 929.080 kb on - strand, within Echvi_0810at 929.080 kb on - strand, within Echvi_0810at 929.084 kb on + strand, within Echvi_0810at 929.115 kb on + strand, within Echvi_0810at 929.168 kb on - strand, within Echvi_0810at 929.168 kb on - strand, within Echvi_0810at 929.169 kb on + strand, within Echvi_0810at 929.169 kb on + strand, within Echvi_0810at 929.196 kb on - strand, within Echvi_0810at 929.212 kb on + strand, within Echvi_0810at 929.212 kb on + strand, within Echvi_0810at 929.213 kb on - strand, within Echvi_0810at 929.216 kb on - strand, within Echvi_0810at 929.220 kb on + strand, within Echvi_0810at 929.221 kb on - strand, within Echvi_0810at 929.221 kb on - strand, within Echvi_0810at 929.221 kb on - strand, within Echvi_0810at 929.221 kb on - strand, within Echvi_0810at 929.222 kb on + strand, within Echvi_0810at 929.254 kb on + strand, within Echvi_0810at 929.254 kb on + strand, within Echvi_0810at 929.255 kb on - strand, within Echvi_0810at 929.255 kb on - strand, within Echvi_0810at 929.255 kb on - strand, within Echvi_0810at 929.256 kb on + strand, within Echvi_0810at 929.256 kb on + strand, within Echvi_0810at 929.257 kb on - strand, within Echvi_0810at 929.257 kb on - strand, within Echvi_0810at 929.257 kb on - strand, within Echvi_0810at 929.257 kb on - strand, within Echvi_0810at 929.259 kb on + strand, within Echvi_0810at 929.259 kb on + strand, within Echvi_0810at 929.260 kb on - strand, within Echvi_0810at 929.260 kb on - strand, within Echvi_0810at 929.260 kb on - strand, within Echvi_0810at 929.260 kb on - strand, within Echvi_0810at 929.405 kb on - strandat 929.416 kb on - strandat 929.427 kb on + strandat 929.447 kb on + strandat 929.662 kb on + strandat 929.663 kb on - strandat 929.665 kb on + strandat 929.665 kb on + strandat 929.696 kb on + strandat 929.752 kb on + strandat 929.752 kb on + strandat 929.855 kb on + strandat 929.855 kb on + strandat 929.855 kb on + strandat 929.855 kb on + strandat 929.855 kb on + strandat 929.856 kb on - strandat 929.890 kb on - strand, within Echvi_0811at 929.895 kb on - strand, within Echvi_0811at 929.938 kb on - strand, within Echvi_0811at 929.945 kb on + strand, within Echvi_0811at 929.945 kb on + strand, within Echvi_0811at 929.946 kb on - strand, within Echvi_0811at 929.946 kb on - strand, within Echvi_0811at 930.044 kb on + strand, within Echvi_0811at 930.163 kb on - strand, within Echvi_0811at 930.196 kb on - strand, within Echvi_0811at 930.223 kb on + strand, within Echvi_0811at 930.223 kb on + strand, within Echvi_0811at 930.223 kb on + strand, within Echvi_0811at 930.224 kb on - strand, within Echvi_0811at 930.280 kb on - strand, within Echvi_0811at 930.509 kb on + strand, within Echvi_0811at 930.509 kb on + strand, within Echvi_0811

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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926,919 + -1.2
926,926 + -0.7
926,962 + +0.3
926,978 - +1.3
927,202 - +2.3
927,202 - +0.2
927,202 - -0.6
927,204 - -0.5
927,204 - -0.9
927,373 + +1.3
927,445 + -0.5
927,446 - +1.0
927,446 - +1.9
927,451 - -0.4
927,589 - +1.8
927,606 - +2.3
927,607 + -0.9
927,643 - -0.1
927,643 - -1.4
927,645 - -1.9
927,645 - +1.6
927,790 + -0.2
927,829 + +1.9
927,829 + +0.2
927,855 - -0.7
927,872 + -0.7
927,875 + +0.4
927,875 + -0.4
927,921 + +0.4
927,945 - -0.7
927,979 - +0.5
928,060 + Echvi_0810 0.10 -0.3
928,078 + Echvi_0810 0.11 +1.2
928,078 + Echvi_0810 0.11 -0.6
928,078 + Echvi_0810 0.11 +0.1
928,078 + Echvi_0810 0.11 +0.1
928,078 + Echvi_0810 0.11 -0.3
928,078 + Echvi_0810 0.11 -0.9
928,078 + +2.3
928,078 + Echvi_0810 0.11 -0.4
928,079 - Echvi_0810 0.12 +0.6
928,079 - Echvi_0810 0.12 -1.1
928,079 - Echvi_0810 0.12 -0.5
928,079 - Echvi_0810 0.12 -0.1
928,079 - Echvi_0810 0.12 -1.2
928,079 - Echvi_0810 0.12 -1.6
928,079 - Echvi_0810 0.12 -0.9
928,079 - Echvi_0810 0.12 +0.3
928,110 - Echvi_0810 0.13 -1.1
928,133 + Echvi_0810 0.15 +0.0
928,133 + Echvi_0810 0.15 +0.8
928,134 - Echvi_0810 0.15 -0.9
928,134 - Echvi_0810 0.15 -2.1
928,157 - Echvi_0810 0.16 -1.4
928,175 + Echvi_0810 0.17 -1.0
928,335 - Echvi_0810 0.27 +0.3
928,351 - Echvi_0810 0.28 +1.9
928,351 - Echvi_0810 0.28 -1.8
928,353 + Echvi_0810 0.28 -1.6
928,353 + Echvi_0810 0.28 -0.8
928,359 - Echvi_0810 0.28 -0.4
928,359 - Echvi_0810 0.28 -1.0
928,359 - Echvi_0810 0.28 -0.5
928,400 + Echvi_0810 0.31 -0.9
928,400 + Echvi_0810 0.31 -0.7
928,407 - Echvi_0810 0.31 -1.0
928,449 + Echvi_0810 0.34 -0.9
928,466 + Echvi_0810 0.35 -0.9
928,467 - Echvi_0810 0.35 -1.5
928,473 - Echvi_0810 0.35 -0.6
928,473 - Echvi_0810 0.35 -2.1
928,523 + Echvi_0810 0.38 -0.2
928,523 + Echvi_0810 0.38 -0.4
928,523 + Echvi_0810 0.38 -0.7
928,547 + Echvi_0810 0.39 -0.0
928,547 + Echvi_0810 0.39 -0.0
928,565 + Echvi_0810 0.41 +0.6
928,587 + Echvi_0810 0.42 -1.9
928,617 - Echvi_0810 0.44 -0.8
928,623 + Echvi_0810 0.44 -0.3
928,653 + Echvi_0810 0.46 +0.5
928,668 + Echvi_0810 0.47 -0.1
928,669 - Echvi_0810 0.47 -0.2
928,677 + Echvi_0810 0.47 -0.1
928,716 - Echvi_0810 0.50 +0.0
928,788 + Echvi_0810 0.54 -1.5
928,789 - Echvi_0810 0.54 -1.0
928,801 - Echvi_0810 0.55 -0.2
928,807 + Echvi_0810 0.55 -0.1
928,808 - Echvi_0810 0.55 -0.4
928,830 - Echvi_0810 0.56 -0.8
928,857 + Echvi_0810 0.58 -2.2
928,890 + Echvi_0810 0.60 -0.9
928,890 + Echvi_0810 0.60 -1.0
928,891 - Echvi_0810 0.60 -0.4
928,895 + Echvi_0810 0.60 -0.4
928,896 - Echvi_0810 0.60 -0.0
928,979 + Echvi_0810 0.65 -0.4
928,979 + Echvi_0810 0.65 -1.4
928,982 + Echvi_0810 0.65 -0.8
928,983 - Echvi_0810 0.66 +1.2
928,983 - Echvi_0810 0.66 -0.0
928,983 - Echvi_0810 0.66 +0.2
928,989 - Echvi_0810 0.66 -1.0
929,016 + Echvi_0810 0.68 +0.1
929,080 - Echvi_0810 0.71 -0.4
929,080 - Echvi_0810 0.71 -0.4
929,084 + Echvi_0810 0.72 -0.3
929,115 + Echvi_0810 0.73 -0.8
929,168 - Echvi_0810 0.77 -0.5
929,168 - Echvi_0810 0.77 +1.0
929,169 + Echvi_0810 0.77 -0.1
929,169 + Echvi_0810 0.77 +1.0
929,196 - Echvi_0810 0.78 -0.3
929,212 + Echvi_0810 0.79 -0.1
929,212 + Echvi_0810 0.79 +1.5
929,213 - Echvi_0810 0.79 +0.1
929,216 - Echvi_0810 0.79 -0.6
929,220 + Echvi_0810 0.80 -1.0
929,221 - Echvi_0810 0.80 -1.3
929,221 - Echvi_0810 0.80 -1.3
929,221 - Echvi_0810 0.80 -0.8
929,221 - Echvi_0810 0.80 -1.0
929,222 + Echvi_0810 0.80 +2.3
929,254 + Echvi_0810 0.82 -0.3
929,254 + Echvi_0810 0.82 -1.6
929,255 - Echvi_0810 0.82 -0.6
929,255 - Echvi_0810 0.82 -1.3
929,255 - Echvi_0810 0.82 +0.2
929,256 + Echvi_0810 0.82 -1.2
929,256 + Echvi_0810 0.82 +0.7
929,257 - Echvi_0810 0.82 -0.0
929,257 - Echvi_0810 0.82 +0.6
929,257 - Echvi_0810 0.82 -1.0
929,257 - Echvi_0810 0.82 +0.9
929,259 + Echvi_0810 0.82 -0.5
929,259 + Echvi_0810 0.82 -0.6
929,260 - Echvi_0810 0.82 +0.2
929,260 - Echvi_0810 0.82 -0.3
929,260 - Echvi_0810 0.82 +0.7
929,260 - Echvi_0810 0.82 -1.1
929,405 - +3.3
929,416 - +1.1
929,427 + -0.3
929,447 + +0.2
929,662 + +1.1
929,663 - +0.8
929,665 + +0.6
929,665 + -1.4
929,696 + -0.2
929,752 + +0.3
929,752 + +1.7
929,855 + -0.7
929,855 + -1.1
929,855 + +3.9
929,855 + +0.3
929,855 + -0.9
929,856 - -0.8
929,890 - Echvi_0811 0.12 +0.0
929,895 - Echvi_0811 0.12 +1.1
929,938 - Echvi_0811 0.14 -1.0
929,945 + Echvi_0811 0.14 -1.1
929,945 + Echvi_0811 0.14 -0.1
929,946 - Echvi_0811 0.14 +1.8
929,946 - Echvi_0811 0.14 +0.1
930,044 + Echvi_0811 0.20 +0.3
930,163 - Echvi_0811 0.26 -0.8
930,196 - Echvi_0811 0.27 -0.6
930,223 + Echvi_0811 0.29 +0.3
930,223 + Echvi_0811 0.29 -0.3
930,223 + Echvi_0811 0.29 -0.3
930,224 - Echvi_0811 0.29 +0.4
930,280 - Echvi_0811 0.32 +0.7
930,509 + Echvi_0811 0.43 -0.5
930,509 + Echvi_0811 0.43 +0.0

Or see this region's nucleotide sequence