Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0776

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0774 and Echvi_0775 are separated by 36 nucleotidesEchvi_0775 and Echvi_0776 are separated by 18 nucleotidesEchvi_0776 and Echvi_0777 are separated by 154 nucleotides Echvi_0774: Echvi_0774 - hypothetical protein, at 873,296 to 873,400 _0774 Echvi_0775: Echvi_0775 - NAD binding domain of 6-phosphogluconate dehydrogenase., at 873,437 to 874,339 _0775 Echvi_0776: Echvi_0776 - Sterol desaturase, at 874,358 to 874,987 _0776 Echvi_0777: Echvi_0777 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 875,142 to 876,281 _0777 Position (kb) 874 875Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 873.457 kb on + strandat 873.457 kb on + strandat 873.457 kb on + strandat 873.459 kb on + strandat 873.463 kb on - strandat 873.558 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.606 kb on - strand, within Echvi_0775at 873.626 kb on + strand, within Echvi_0775at 873.627 kb on - strand, within Echvi_0775at 873.701 kb on + strand, within Echvi_0775at 873.701 kb on + strand, within Echvi_0775at 873.702 kb on - strand, within Echvi_0775at 873.715 kb on - strand, within Echvi_0775at 873.759 kb on + strand, within Echvi_0775at 873.759 kb on + strand, within Echvi_0775at 873.839 kb on + strand, within Echvi_0775at 873.839 kb on + strand, within Echvi_0775at 873.840 kb on - strand, within Echvi_0775at 873.878 kb on - strand, within Echvi_0775at 873.919 kb on + strand, within Echvi_0775at 873.937 kb on + strand, within Echvi_0775at 873.980 kb on - strand, within Echvi_0775at 873.998 kb on + strand, within Echvi_0775at 873.999 kb on - strand, within Echvi_0775at 874.187 kb on + strand, within Echvi_0775at 874.187 kb on + strand, within Echvi_0775at 874.250 kb on + strandat 874.251 kb on - strandat 874.267 kb on + strandat 874.267 kb on + strandat 874.284 kb on + strandat 874.284 kb on + strandat 874.284 kb on + strandat 874.284 kb on + strandat 874.315 kb on + strandat 874.315 kb on + strandat 874.360 kb on - strandat 874.439 kb on - strand, within Echvi_0776at 874.440 kb on + strand, within Echvi_0776at 874.505 kb on + strand, within Echvi_0776at 874.505 kb on + strand, within Echvi_0776at 874.505 kb on + strand, within Echvi_0776at 874.506 kb on - strand, within Echvi_0776at 874.506 kb on - strand, within Echvi_0776at 874.506 kb on - strand, within Echvi_0776at 874.511 kb on - strand, within Echvi_0776at 874.512 kb on + strand, within Echvi_0776at 874.512 kb on + strand, within Echvi_0776at 874.513 kb on - strand, within Echvi_0776at 874.513 kb on - strand, within Echvi_0776at 874.527 kb on + strand, within Echvi_0776at 874.527 kb on + strand, within Echvi_0776at 874.537 kb on - strand, within Echvi_0776at 874.592 kb on - strand, within Echvi_0776at 874.631 kb on - strand, within Echvi_0776at 874.688 kb on + strand, within Echvi_0776at 874.695 kb on + strand, within Echvi_0776at 874.700 kb on + strand, within Echvi_0776at 874.714 kb on + strand, within Echvi_0776at 874.732 kb on + strand, within Echvi_0776at 874.732 kb on + strand, within Echvi_0776at 874.733 kb on - strand, within Echvi_0776at 874.733 kb on - strand, within Echvi_0776at 874.747 kb on + strand, within Echvi_0776at 874.748 kb on - strand, within Echvi_0776at 874.790 kb on + strand, within Echvi_0776at 874.790 kb on + strand, within Echvi_0776at 874.791 kb on - strand, within Echvi_0776at 874.792 kb on + strand, within Echvi_0776at 874.793 kb on - strand, within Echvi_0776at 874.802 kb on + strand, within Echvi_0776at 874.882 kb on + strand, within Echvi_0776at 874.882 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.895 kb on - strand, within Echvi_0776at 874.895 kb on - strand, within Echvi_0776at 874.895 kb on - strand, within Echvi_0776at 874.996 kb on - strandat 875.034 kb on + strandat 875.035 kb on - strandat 875.093 kb on + strandat 875.110 kb on + strandat 875.127 kb on - strandat 875.127 kb on - strandat 875.156 kb on + strandat 875.202 kb on + strandat 875.415 kb on + strand, within Echvi_0777

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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873,457 + +0.6
873,457 + +0.2
873,457 + -1.9
873,459 + -0.2
873,463 - +0.6
873,558 + Echvi_0775 0.13 -0.5
873,605 + Echvi_0775 0.19 -0.2
873,605 + Echvi_0775 0.19 -0.4
873,605 + Echvi_0775 0.19 -1.0
873,605 + Echvi_0775 0.19 -0.8
873,606 - Echvi_0775 0.19 +4.1
873,626 + Echvi_0775 0.21 +0.1
873,627 - Echvi_0775 0.21 +2.0
873,701 + Echvi_0775 0.29 +1.7
873,701 + Echvi_0775 0.29 -0.4
873,702 - Echvi_0775 0.29 +1.6
873,715 - Echvi_0775 0.31 +0.3
873,759 + Echvi_0775 0.36 -0.4
873,759 + Echvi_0775 0.36 -2.0
873,839 + Echvi_0775 0.45 +0.3
873,839 + Echvi_0775 0.45 +0.8
873,840 - Echvi_0775 0.45 -0.6
873,878 - Echvi_0775 0.49 +1.6
873,919 + Echvi_0775 0.53 +0.0
873,937 + Echvi_0775 0.55 +0.6
873,980 - Echvi_0775 0.60 +1.5
873,998 + Echvi_0775 0.62 -1.4
873,999 - Echvi_0775 0.62 +1.2
874,187 + Echvi_0775 0.83 +1.2
874,187 + Echvi_0775 0.83 -0.6
874,250 + -1.9
874,251 - +0.6
874,267 + +0.2
874,267 + +0.0
874,284 + +0.6
874,284 + -1.9
874,284 + -1.3
874,284 + +0.3
874,315 + -0.9
874,315 + -0.1
874,360 - -0.8
874,439 - Echvi_0776 0.13 -1.4
874,440 + Echvi_0776 0.13 -0.5
874,505 + Echvi_0776 0.23 -1.4
874,505 + Echvi_0776 0.23 -1.1
874,505 + Echvi_0776 0.23 -0.8
874,506 - Echvi_0776 0.23 -1.4
874,506 - Echvi_0776 0.23 -0.8
874,506 - Echvi_0776 0.23 +0.5
874,511 - Echvi_0776 0.24 -1.1
874,512 + Echvi_0776 0.24 -0.6
874,512 + Echvi_0776 0.24 -1.3
874,513 - Echvi_0776 0.25 +0.1
874,513 - Echvi_0776 0.25 +0.5
874,527 + Echvi_0776 0.27 -1.0
874,527 + Echvi_0776 0.27 -0.3
874,537 - Echvi_0776 0.28 -0.9
874,592 - Echvi_0776 0.37 -1.2
874,631 - Echvi_0776 0.43 -0.5
874,688 + Echvi_0776 0.52 -1.4
874,695 + Echvi_0776 0.53 -1.1
874,700 + Echvi_0776 0.54 -0.8
874,714 + Echvi_0776 0.57 -1.1
874,732 + Echvi_0776 0.59 -1.2
874,732 + Echvi_0776 0.59 -2.3
874,733 - Echvi_0776 0.60 -0.8
874,733 - Echvi_0776 0.60 -0.8
874,747 + Echvi_0776 0.62 +1.4
874,748 - Echvi_0776 0.62 +0.4
874,790 + Echvi_0776 0.69 -1.4
874,790 + Echvi_0776 0.69 +0.2
874,791 - Echvi_0776 0.69 -0.7
874,792 + Echvi_0776 0.69 -2.5
874,793 - Echvi_0776 0.69 -0.1
874,802 + Echvi_0776 0.70 -0.2
874,882 + Echvi_0776 0.83 -3.0
874,882 + Echvi_0776 0.83 -1.2
874,891 + Echvi_0776 0.85 -1.0
874,891 + Echvi_0776 0.85 +0.6
874,891 + Echvi_0776 0.85 -0.8
874,891 + Echvi_0776 0.85 +0.2
874,891 + Echvi_0776 0.85 -0.5
874,894 + Echvi_0776 0.85 -0.8
874,894 + Echvi_0776 0.85 -1.5
874,894 + Echvi_0776 0.85 -1.6
874,894 + Echvi_0776 0.85 +0.1
874,894 + Echvi_0776 0.85 -0.5
874,894 + Echvi_0776 0.85 -0.4
874,894 + Echvi_0776 0.85 -1.2
874,894 + Echvi_0776 0.85 -3.1
874,895 - Echvi_0776 0.85 +0.2
874,895 - Echvi_0776 0.85 -2.1
874,895 - Echvi_0776 0.85 +0.8
874,996 - +2.8
875,034 + +0.4
875,035 - -1.4
875,093 + -1.1
875,110 + +1.4
875,127 - +0.1
875,127 - +1.8
875,156 + +0.4
875,202 + +2.8
875,415 + Echvi_0777 0.24 +3.0

Or see this region's nucleotide sequence