Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0716

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0714 and Echvi_0715 are separated by 37 nucleotidesEchvi_0715 and Echvi_0716 overlap by 4 nucleotidesEchvi_0716 and Echvi_0717 are separated by 194 nucleotidesEchvi_0717 and Echvi_0718 are separated by 22 nucleotides Echvi_0714: Echvi_0714 - hypothetical protein, at 806,038 to 808,056 _0714 Echvi_0715: Echvi_0715 - hypothetical protein, at 808,094 to 808,264 _0715 Echvi_0716: Echvi_0716 - Asparaginase, at 808,261 to 809,349 _0716 Echvi_0717: Echvi_0717 - DnaK suppressor protein, at 809,544 to 809,927 _0717 Echvi_0718: Echvi_0718 - segregation and condensation protein B, at 809,950 to 810,510 _0718 Position (kb) 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 807.281 kb on + strand, within Echvi_0714at 807.282 kb on - strand, within Echvi_0714at 807.291 kb on + strand, within Echvi_0714at 807.291 kb on + strand, within Echvi_0714at 807.292 kb on - strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.303 kb on + strand, within Echvi_0714at 807.304 kb on - strand, within Echvi_0714at 807.304 kb on - strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.313 kb on - strand, within Echvi_0714at 807.333 kb on + strand, within Echvi_0714at 807.434 kb on + strand, within Echvi_0714at 807.435 kb on - strand, within Echvi_0714at 807.750 kb on + strand, within Echvi_0714at 807.853 kb on + strand, within Echvi_0714at 807.920 kb on - strandat 808.034 kb on + strandat 808.045 kb on - strandat 808.061 kb on + strandat 808.063 kb on + strandat 808.063 kb on + strandat 808.064 kb on - strandat 808.087 kb on - strandat 808.130 kb on + strand, within Echvi_0715at 808.130 kb on + strand, within Echvi_0715at 808.184 kb on + strand, within Echvi_0715at 808.286 kb on + strandat 808.287 kb on - strandat 808.322 kb on + strandat 808.323 kb on - strandat 808.374 kb on + strand, within Echvi_0716at 808.374 kb on + strand, within Echvi_0716at 808.458 kb on + strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.466 kb on + strand, within Echvi_0716at 808.484 kb on - strand, within Echvi_0716at 808.586 kb on - strand, within Echvi_0716at 808.688 kb on + strand, within Echvi_0716at 808.702 kb on - strand, within Echvi_0716at 808.702 kb on - strand, within Echvi_0716at 808.791 kb on - strand, within Echvi_0716at 808.811 kb on + strand, within Echvi_0716at 808.894 kb on + strand, within Echvi_0716at 808.901 kb on - strand, within Echvi_0716at 808.901 kb on - strand, within Echvi_0716at 808.907 kb on + strand, within Echvi_0716at 808.908 kb on - strand, within Echvi_0716at 808.908 kb on - strand, within Echvi_0716at 808.918 kb on - strand, within Echvi_0716at 808.930 kb on - strand, within Echvi_0716at 809.120 kb on + strand, within Echvi_0716at 809.120 kb on + strand, within Echvi_0716at 809.121 kb on - strand, within Echvi_0716at 809.121 kb on - strand, within Echvi_0716at 809.121 kb on - strand, within Echvi_0716at 809.144 kb on - strand, within Echvi_0716at 809.199 kb on + strand, within Echvi_0716at 809.303 kb on - strandat 809.323 kb on + strandat 809.388 kb on + strandat 809.396 kb on + strandat 809.402 kb on + strandat 809.408 kb on + strandat 809.408 kb on + strandat 809.408 kb on + strandat 809.410 kb on + strandat 809.515 kb on + strandat 809.515 kb on + strandat 809.515 kb on + strandat 809.515 kb on + strandat 809.516 kb on - strandat 809.516 kb on - strandat 809.519 kb on + strandat 809.543 kb on + strandat 809.543 kb on + strandat 809.543 kb on + strandat 809.568 kb on + strandat 809.569 kb on - strandat 809.729 kb on + strand, within Echvi_0717at 809.734 kb on + strand, within Echvi_0717at 809.735 kb on - strand, within Echvi_0717at 809.787 kb on - strand, within Echvi_0717at 809.826 kb on + strand, within Echvi_0717at 809.826 kb on + strand, within Echvi_0717at 809.826 kb on + strand, within Echvi_0717at 809.827 kb on - strand, within Echvi_0717at 809.850 kb on - strand, within Echvi_0717at 809.915 kb on - strandat 809.941 kb on + strandat 809.942 kb on - strandat 809.970 kb on + strandat 809.970 kb on + strandat 809.970 kb on + strandat 809.970 kb on + strandat 809.970 kb on + strandat 809.971 kb on - strandat 809.981 kb on + strandat 809.982 kb on - strandat 809.984 kb on + strandat 809.985 kb on - strandat 809.985 kb on - strandat 810.201 kb on - strand, within Echvi_0718

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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807,281 + Echvi_0714 0.62 -1.1
807,282 - Echvi_0714 0.62 -0.9
807,291 + Echvi_0714 0.62 +1.3
807,291 + Echvi_0714 0.62 -0.3
807,292 - Echvi_0714 0.62 -0.1
807,301 + Echvi_0714 0.63 -0.0
807,301 + Echvi_0714 0.63 -0.2
807,301 + Echvi_0714 0.63 -1.3
807,301 + Echvi_0714 0.63 -0.5
807,301 + Echvi_0714 0.63 +0.5
807,301 + Echvi_0714 0.63 -0.5
807,301 + Echvi_0714 0.63 -0.1
807,302 - Echvi_0714 0.63 -2.1
807,302 - Echvi_0714 0.63 +0.3
807,302 - Echvi_0714 0.63 +0.5
807,302 - Echvi_0714 0.63 +0.8
807,302 - Echvi_0714 0.63 +0.2
807,302 - Echvi_0714 0.63 -1.3
807,302 - Echvi_0714 0.63 +0.9
807,302 - Echvi_0714 0.63 +0.8
807,302 - Echvi_0714 0.63 +1.1
807,302 - Echvi_0714 0.63 +0.7
807,302 - Echvi_0714 0.63 +0.6
807,303 + Echvi_0714 0.63 +0.1
807,304 - Echvi_0714 0.63 -1.4
807,304 - Echvi_0714 0.63 +0.2
807,312 + Echvi_0714 0.63 +0.6
807,312 + Echvi_0714 0.63 +0.4
807,312 + Echvi_0714 0.63 +0.4
807,313 - Echvi_0714 0.63 -0.4
807,333 + Echvi_0714 0.64 -1.2
807,434 + Echvi_0714 0.69 +0.0
807,435 - Echvi_0714 0.69 -1.5
807,750 + Echvi_0714 0.85 -0.8
807,853 + Echvi_0714 0.90 -0.9
807,920 - +0.3
808,034 + -1.2
808,045 - +0.1
808,061 + -1.7
808,063 + +0.2
808,063 + -0.8
808,064 - -0.0
808,087 - +1.3
808,130 + Echvi_0715 0.21 -0.8
808,130 + Echvi_0715 0.21 -0.4
808,184 + Echvi_0715 0.53 -2.0
808,286 + +0.0
808,287 - -0.6
808,322 + -0.2
808,323 - -0.0
808,374 + Echvi_0716 0.10 +0.4
808,374 + Echvi_0716 0.10 -0.9
808,458 + Echvi_0716 0.18 -0.7
808,459 - Echvi_0716 0.18 -0.1
808,459 - Echvi_0716 0.18 -0.1
808,459 - Echvi_0716 0.18 +1.4
808,466 + Echvi_0716 0.19 -0.5
808,484 - Echvi_0716 0.20 +0.5
808,586 - Echvi_0716 0.30 +0.5
808,688 + Echvi_0716 0.39 -0.5
808,702 - Echvi_0716 0.40 -1.3
808,702 - Echvi_0716 0.40 -0.5
808,791 - Echvi_0716 0.49 -1.5
808,811 + Echvi_0716 0.51 +2.8
808,894 + Echvi_0716 0.58 -0.7
808,901 - Echvi_0716 0.59 +0.6
808,901 - Echvi_0716 0.59 +0.0
808,907 + Echvi_0716 0.59 +0.7
808,908 - Echvi_0716 0.59 -0.1
808,908 - Echvi_0716 0.59 +1.6
808,918 - Echvi_0716 0.60 +0.9
808,930 - Echvi_0716 0.61 -0.1
809,120 + Echvi_0716 0.79 +1.0
809,120 + Echvi_0716 0.79 +2.5
809,121 - Echvi_0716 0.79 +0.5
809,121 - Echvi_0716 0.79 +0.1
809,121 - Echvi_0716 0.79 +4.5
809,144 - Echvi_0716 0.81 -0.1
809,199 + Echvi_0716 0.86 +0.9
809,303 - +0.1
809,323 + +2.5
809,388 + +1.1
809,396 + +2.1
809,402 + +0.9
809,408 + +2.1
809,408 + +0.7
809,408 + +1.6
809,410 + +1.0
809,515 + +1.7
809,515 + +1.4
809,515 + +1.1
809,515 + -0.3
809,516 - -1.0
809,516 - -1.1
809,519 + -0.6
809,543 + +1.2
809,543 + -0.2
809,543 + -0.4
809,568 + -1.2
809,569 - -2.3
809,729 + Echvi_0717 0.48 -1.4
809,734 + Echvi_0717 0.49 -1.7
809,735 - Echvi_0717 0.50 +0.0
809,787 - Echvi_0717 0.63 -1.0
809,826 + Echvi_0717 0.73 +0.6
809,826 + Echvi_0717 0.73 -1.1
809,826 + Echvi_0717 0.73 -1.6
809,827 - Echvi_0717 0.74 +0.0
809,850 - Echvi_0717 0.80 -0.0
809,915 - -2.0
809,941 + -0.5
809,942 - -1.0
809,970 + -1.8
809,970 + -2.3
809,970 + -1.8
809,970 + -0.2
809,970 + -0.8
809,971 - -1.6
809,981 + -0.3
809,982 - +0.8
809,984 + +0.2
809,985 - -0.8
809,985 - -0.4
810,201 - Echvi_0718 0.45 -1.4

Or see this region's nucleotide sequence