Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0714

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0713 and Echvi_0714 are separated by 214 nucleotidesEchvi_0714 and Echvi_0715 are separated by 37 nucleotidesEchvi_0715 and Echvi_0716 overlap by 4 nucleotides Echvi_0713: Echvi_0713 - aspartate-semialdehyde dehydrogenase (peptidoglycan organisms), at 804,834 to 805,823 _0713 Echvi_0714: Echvi_0714 - hypothetical protein, at 806,038 to 808,056 _0714 Echvi_0715: Echvi_0715 - hypothetical protein, at 808,094 to 808,264 _0715 Echvi_0716: Echvi_0716 - Asparaginase, at 808,261 to 809,349 _0716 Position (kb) 806 807 808 809Strain fitness (log2 ratio) -2 -1 0 1 2 3at 805.839 kb on - strandat 805.852 kb on + strandat 805.884 kb on + strandat 806.000 kb on + strandat 806.050 kb on + strandat 806.122 kb on + strandat 806.151 kb on + strandat 806.230 kb on + strandat 806.250 kb on - strand, within Echvi_0714at 806.250 kb on - strand, within Echvi_0714at 806.277 kb on + strand, within Echvi_0714at 806.379 kb on - strand, within Echvi_0714at 806.488 kb on + strand, within Echvi_0714at 806.488 kb on + strand, within Echvi_0714at 806.599 kb on + strand, within Echvi_0714at 806.599 kb on + strand, within Echvi_0714at 806.654 kb on + strand, within Echvi_0714at 806.654 kb on + strand, within Echvi_0714at 806.655 kb on - strand, within Echvi_0714at 806.680 kb on + strand, within Echvi_0714at 806.681 kb on - strand, within Echvi_0714at 806.754 kb on + strand, within Echvi_0714at 806.755 kb on - strand, within Echvi_0714at 806.755 kb on - strand, within Echvi_0714at 806.761 kb on + strand, within Echvi_0714at 806.798 kb on + strand, within Echvi_0714at 806.798 kb on + strand, within Echvi_0714at 806.799 kb on - strand, within Echvi_0714at 806.799 kb on - strand, within Echvi_0714at 806.953 kb on - strand, within Echvi_0714at 807.003 kb on - strand, within Echvi_0714at 807.077 kb on + strand, within Echvi_0714at 807.077 kb on + strand, within Echvi_0714at 807.164 kb on + strand, within Echvi_0714at 807.164 kb on + strand, within Echvi_0714at 807.165 kb on - strand, within Echvi_0714at 807.281 kb on + strand, within Echvi_0714at 807.282 kb on - strand, within Echvi_0714at 807.291 kb on + strand, within Echvi_0714at 807.291 kb on + strand, within Echvi_0714at 807.292 kb on - strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.301 kb on + strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.302 kb on - strand, within Echvi_0714at 807.303 kb on + strand, within Echvi_0714at 807.304 kb on - strand, within Echvi_0714at 807.304 kb on - strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.312 kb on + strand, within Echvi_0714at 807.313 kb on - strand, within Echvi_0714at 807.333 kb on + strand, within Echvi_0714at 807.434 kb on + strand, within Echvi_0714at 807.435 kb on - strand, within Echvi_0714at 807.750 kb on + strand, within Echvi_0714at 807.853 kb on + strand, within Echvi_0714at 807.920 kb on - strandat 808.034 kb on + strandat 808.045 kb on - strandat 808.061 kb on + strandat 808.063 kb on + strandat 808.063 kb on + strandat 808.064 kb on - strandat 808.087 kb on - strandat 808.130 kb on + strand, within Echvi_0715at 808.130 kb on + strand, within Echvi_0715at 808.184 kb on + strand, within Echvi_0715at 808.286 kb on + strandat 808.287 kb on - strandat 808.322 kb on + strandat 808.323 kb on - strandat 808.374 kb on + strand, within Echvi_0716at 808.374 kb on + strand, within Echvi_0716at 808.458 kb on + strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.459 kb on - strand, within Echvi_0716at 808.466 kb on + strand, within Echvi_0716at 808.484 kb on - strand, within Echvi_0716at 808.586 kb on - strand, within Echvi_0716at 808.688 kb on + strand, within Echvi_0716at 808.702 kb on - strand, within Echvi_0716at 808.702 kb on - strand, within Echvi_0716at 808.791 kb on - strand, within Echvi_0716at 808.811 kb on + strand, within Echvi_0716at 808.894 kb on + strand, within Echvi_0716at 808.901 kb on - strand, within Echvi_0716at 808.901 kb on - strand, within Echvi_0716at 808.907 kb on + strand, within Echvi_0716at 808.908 kb on - strand, within Echvi_0716at 808.908 kb on - strand, within Echvi_0716at 808.918 kb on - strand, within Echvi_0716at 808.930 kb on - strand, within Echvi_0716

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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805,839 - +0.2
805,852 + -0.4
805,884 + +0.3
806,000 + -0.8
806,050 + +0.4
806,122 + -0.5
806,151 + -0.2
806,230 + +0.6
806,250 - Echvi_0714 0.11 +1.1
806,250 - Echvi_0714 0.11 +0.3
806,277 + Echvi_0714 0.12 +1.0
806,379 - Echvi_0714 0.17 +0.9
806,488 + Echvi_0714 0.22 +1.2
806,488 + Echvi_0714 0.22 +0.8
806,599 + Echvi_0714 0.28 -0.2
806,599 + Echvi_0714 0.28 -0.0
806,654 + Echvi_0714 0.31 -1.2
806,654 + Echvi_0714 0.31 -2.3
806,655 - Echvi_0714 0.31 +0.1
806,680 + Echvi_0714 0.32 -0.3
806,681 - Echvi_0714 0.32 +0.9
806,754 + Echvi_0714 0.35 +0.9
806,755 - Echvi_0714 0.36 +0.8
806,755 - Echvi_0714 0.36 +1.0
806,761 + Echvi_0714 0.36 -2.5
806,798 + Echvi_0714 0.38 -0.3
806,798 + Echvi_0714 0.38 +0.9
806,799 - Echvi_0714 0.38 -0.2
806,799 - Echvi_0714 0.38 -0.6
806,953 - Echvi_0714 0.45 -0.0
807,003 - Echvi_0714 0.48 +0.6
807,077 + Echvi_0714 0.51 +0.0
807,077 + Echvi_0714 0.51 +0.1
807,164 + Echvi_0714 0.56 +0.9
807,164 + Echvi_0714 0.56 -1.0
807,165 - Echvi_0714 0.56 +1.3
807,281 + Echvi_0714 0.62 -1.1
807,282 - Echvi_0714 0.62 -0.9
807,291 + Echvi_0714 0.62 +1.3
807,291 + Echvi_0714 0.62 -0.3
807,292 - Echvi_0714 0.62 -0.1
807,301 + Echvi_0714 0.63 -0.0
807,301 + Echvi_0714 0.63 -0.2
807,301 + Echvi_0714 0.63 -1.3
807,301 + Echvi_0714 0.63 -0.5
807,301 + Echvi_0714 0.63 +0.5
807,301 + Echvi_0714 0.63 -0.5
807,301 + Echvi_0714 0.63 -0.1
807,302 - Echvi_0714 0.63 -2.1
807,302 - Echvi_0714 0.63 +0.3
807,302 - Echvi_0714 0.63 +0.5
807,302 - Echvi_0714 0.63 +0.8
807,302 - Echvi_0714 0.63 +0.2
807,302 - Echvi_0714 0.63 -1.3
807,302 - Echvi_0714 0.63 +0.9
807,302 - Echvi_0714 0.63 +0.8
807,302 - Echvi_0714 0.63 +1.1
807,302 - Echvi_0714 0.63 +0.7
807,302 - Echvi_0714 0.63 +0.6
807,303 + Echvi_0714 0.63 +0.1
807,304 - Echvi_0714 0.63 -1.4
807,304 - Echvi_0714 0.63 +0.2
807,312 + Echvi_0714 0.63 +0.6
807,312 + Echvi_0714 0.63 +0.4
807,312 + Echvi_0714 0.63 +0.4
807,313 - Echvi_0714 0.63 -0.4
807,333 + Echvi_0714 0.64 -1.2
807,434 + Echvi_0714 0.69 +0.0
807,435 - Echvi_0714 0.69 -1.5
807,750 + Echvi_0714 0.85 -0.8
807,853 + Echvi_0714 0.90 -0.9
807,920 - +0.3
808,034 + -1.2
808,045 - +0.1
808,061 + -1.7
808,063 + +0.2
808,063 + -0.8
808,064 - -0.0
808,087 - +1.3
808,130 + Echvi_0715 0.21 -0.8
808,130 + Echvi_0715 0.21 -0.4
808,184 + Echvi_0715 0.53 -2.0
808,286 + +0.0
808,287 - -0.6
808,322 + -0.2
808,323 - -0.0
808,374 + Echvi_0716 0.10 +0.4
808,374 + Echvi_0716 0.10 -0.9
808,458 + Echvi_0716 0.18 -0.7
808,459 - Echvi_0716 0.18 -0.1
808,459 - Echvi_0716 0.18 -0.1
808,459 - Echvi_0716 0.18 +1.4
808,466 + Echvi_0716 0.19 -0.5
808,484 - Echvi_0716 0.20 +0.5
808,586 - Echvi_0716 0.30 +0.5
808,688 + Echvi_0716 0.39 -0.5
808,702 - Echvi_0716 0.40 -1.3
808,702 - Echvi_0716 0.40 -0.5
808,791 - Echvi_0716 0.49 -1.5
808,811 + Echvi_0716 0.51 +2.8
808,894 + Echvi_0716 0.58 -0.7
808,901 - Echvi_0716 0.59 +0.6
808,901 - Echvi_0716 0.59 +0.0
808,907 + Echvi_0716 0.59 +0.7
808,908 - Echvi_0716 0.59 -0.1
808,908 - Echvi_0716 0.59 +1.6
808,918 - Echvi_0716 0.60 +0.9
808,930 - Echvi_0716 0.61 -0.1

Or see this region's nucleotide sequence