Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0668 and Echvi_0669 overlap by 14 nucleotides Echvi_0669 and Echvi_0670 are separated by 206 nucleotides Echvi_0670 and Echvi_0671 are separated by 8 nucleotides
Echvi_0668: Echvi_0668 - Geranylgeranyl pyrophosphate synthase, at 750,138 to 751,130
_0668
Echvi_0669: Echvi_0669 - ribonuclease R, at 751,117 to 753,291
_0669
Echvi_0670: Echvi_0670 - DNA polymerase elongation subunit (family B), at 753,498 to 754,223
_0670
Echvi_0671: Echvi_0671 - hypothetical protein, at 754,232 to 754,633
_0671
Position (kb) 751
752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 750.121 kb on + strand at 751.148 kb on - strand at 753.167 kb on - strand at 753.244 kb on - strand at 753.333 kb on - strand at 753.380 kb on - strand at 753.400 kb on - strand at 753.416 kb on + strand at 753.416 kb on + strand at 753.440 kb on + strand at 753.457 kb on + strand at 753.457 kb on + strand at 753.458 kb on - strand at 753.469 kb on + strand at 753.470 kb on - strand at 753.477 kb on + strand at 753.478 kb on - strand at 753.499 kb on + strand at 753.499 kb on + strand at 753.499 kb on + strand at 753.500 kb on - strand at 753.530 kb on + strand at 753.560 kb on - strand at 753.560 kb on - strand at 753.580 kb on - strand, within Echvi_0670 at 753.587 kb on + strand, within Echvi_0670 at 753.595 kb on + strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.599 kb on + strand, within Echvi_0670 at 753.600 kb on - strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.659 kb on + strand, within Echvi_0670 at 753.659 kb on + strand, within Echvi_0670 at 753.715 kb on + strand, within Echvi_0670 at 753.722 kb on + strand, within Echvi_0670 at 753.722 kb on + strand, within Echvi_0670 at 753.722 kb on + strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.724 kb on + strand, within Echvi_0670 at 753.814 kb on - strand, within Echvi_0670 at 753.818 kb on + strand, within Echvi_0670 at 753.819 kb on - strand, within Echvi_0670 at 753.900 kb on + strand, within Echvi_0670 at 753.991 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.041 kb on + strand, within Echvi_0670 at 754.042 kb on - strand, within Echvi_0670 at 754.042 kb on - strand, within Echvi_0670 at 754.043 kb on + strand, within Echvi_0670 at 754.043 kb on + strand, within Echvi_0670 at 754.060 kb on + strand, within Echvi_0670 at 754.062 kb on + strand, within Echvi_0670 at 754.128 kb on + strand, within Echvi_0670 at 754.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 750,121 + +0.2 751,148 - +0.4 753,167 - +0.7 753,244 - -0.5 753,333 - +1.4 753,380 - -0.3 753,400 - +0.6 753,416 + -1.1 753,416 + -0.9 753,440 + -0.4 753,457 + -0.2 753,457 + -1.4 753,458 - +0.1 753,469 + -1.8 753,470 - -0.6 753,477 + +0.4 753,478 - +1.3 753,499 + -1.0 753,499 + -1.0 753,499 + -0.3 753,500 - +0.6 753,530 + -1.0 753,560 - -1.4 753,560 - -1.7 753,580 - Echvi_0670 0.11 -0.3 753,587 + Echvi_0670 0.12 +0.8 753,595 + Echvi_0670 0.13 +0.8 753,596 - Echvi_0670 0.13 +1.4 753,596 - Echvi_0670 0.13 -2.2 753,596 - Echvi_0670 0.13 +0.4 753,596 - Echvi_0670 0.13 +0.1 753,599 + Echvi_0670 0.14 -0.9 753,600 - Echvi_0670 0.14 -0.4 753,657 + Echvi_0670 0.22 -0.7 753,657 + Echvi_0670 0.22 +4.2 753,657 + Echvi_0670 0.22 -1.5 753,657 + Echvi_0670 0.22 -0.2 753,657 + Echvi_0670 0.22 -0.5 753,657 + Echvi_0670 0.22 -0.0 753,658 - Echvi_0670 0.22 +0.8 753,658 - Echvi_0670 0.22 +1.7 753,658 - Echvi_0670 0.22 -0.4 753,658 - Echvi_0670 0.22 +1.0 753,658 - Echvi_0670 0.22 +1.4 753,659 + Echvi_0670 0.22 -0.7 753,659 + Echvi_0670 0.22 -1.0 753,715 + Echvi_0670 0.30 -1.3 753,722 + Echvi_0670 0.31 -1.0 753,722 + Echvi_0670 0.31 +0.2 753,722 + Echvi_0670 0.31 -0.5 753,723 - Echvi_0670 0.31 +0.2 753,723 - Echvi_0670 0.31 +0.2 753,723 - Echvi_0670 0.31 -1.4 753,723 - Echvi_0670 0.31 -0.6 753,723 - Echvi_0670 0.31 -0.6 753,724 + Echvi_0670 0.31 -0.0 753,814 - Echvi_0670 0.44 +0.6 753,818 + Echvi_0670 0.44 -1.9 753,819 - Echvi_0670 0.44 +0.7 753,900 + Echvi_0670 0.55 -0.8 753,991 + Echvi_0670 0.68 +0.4 754,039 + Echvi_0670 0.75 +0.4 754,039 + Echvi_0670 0.75 -1.7 754,039 + Echvi_0670 0.75 +0.1 754,039 + Echvi_0670 0.75 +0.6 754,040 - Echvi_0670 0.75 +0.2 754,040 - Echvi_0670 0.75 -2.2 754,040 - Echvi_0670 0.75 -1.2 754,040 - Echvi_0670 0.75 -0.3 754,040 - Echvi_0670 0.75 -0.8 754,041 + Echvi_0670 0.75 +0.2 754,042 - Echvi_0670 0.75 +0.6 754,042 - Echvi_0670 0.75 -0.6 754,043 + Echvi_0670 0.75 -1.2 754,043 + Echvi_0670 0.75 -1.3 754,060 + Echvi_0670 0.77 -0.1 754,062 + Echvi_0670 0.78 -0.4 754,128 + Echvi_0670 0.87 -0.2 754,224 - +2.2
Or see this region's nucleotide sequence