Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0666 and Echvi_0667 are separated by 190 nucleotides Echvi_0667 and Echvi_0668 are separated by 42 nucleotides Echvi_0668 and Echvi_0669 overlap by 14 nucleotides
Echvi_0666: Echvi_0666 - hypothetical protein, at 749,150 to 749,275
_0666
Echvi_0667: Echvi_0667 - Uncharacterized membrane protein (homolog of Drosophila rhomboid), at 749,466 to 750,095
_0667
Echvi_0668: Echvi_0668 - Geranylgeranyl pyrophosphate synthase, at 750,138 to 751,130
_0668
Echvi_0669: Echvi_0669 - ribonuclease R, at 751,117 to 753,291
_0669
Position (kb) 750
751
752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 749.374 kb on + strand at 749.374 kb on + strand at 749.467 kb on + strand at 749.535 kb on - strand, within Echvi_0667 at 749.538 kb on + strand, within Echvi_0667 at 749.623 kb on - strand, within Echvi_0667 at 749.623 kb on - strand, within Echvi_0667 at 749.640 kb on + strand, within Echvi_0667 at 749.642 kb on + strand, within Echvi_0667 at 749.642 kb on + strand, within Echvi_0667 at 749.742 kb on + strand, within Echvi_0667 at 749.763 kb on - strand, within Echvi_0667 at 749.763 kb on - strand, within Echvi_0667 at 749.870 kb on - strand, within Echvi_0667 at 749.904 kb on - strand, within Echvi_0667 at 749.968 kb on + strand, within Echvi_0667 at 749.969 kb on - strand, within Echvi_0667 at 749.986 kb on - strand, within Echvi_0667 at 749.999 kb on + strand, within Echvi_0667 at 750.000 kb on - strand, within Echvi_0667 at 750.040 kb on + strand at 750.040 kb on + strand at 750.066 kb on - strand at 750.087 kb on + strand at 750.097 kb on + strand at 750.121 kb on + strand at 751.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 749,374 + -0.1 749,374 + -0.9 749,467 + -1.1 749,535 - Echvi_0667 0.11 +0.5 749,538 + Echvi_0667 0.11 +0.2 749,623 - Echvi_0667 0.25 +2.4 749,623 - Echvi_0667 0.25 -0.1 749,640 + Echvi_0667 0.28 -1.3 749,642 + Echvi_0667 0.28 +0.3 749,642 + Echvi_0667 0.28 -2.0 749,742 + Echvi_0667 0.44 +0.3 749,763 - Echvi_0667 0.47 -1.6 749,763 - Echvi_0667 0.47 +1.5 749,870 - Echvi_0667 0.64 +0.9 749,904 - Echvi_0667 0.70 -0.2 749,968 + Echvi_0667 0.80 +1.1 749,969 - Echvi_0667 0.80 +0.4 749,986 - Echvi_0667 0.83 +1.3 749,999 + Echvi_0667 0.85 -0.2 750,000 - Echvi_0667 0.85 +0.2 750,040 + +0.1 750,040 + +0.4 750,066 - +1.0 750,087 + -0.6 750,097 + -1.2 750,121 + +0.2 751,148 - +0.4
Or see this region's nucleotide sequence