Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0641

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0639 and Echvi_0640 are separated by 106 nucleotidesEchvi_0640 and Echvi_0641 are separated by 80 nucleotidesEchvi_0641 and Echvi_0642 are separated by 653 nucleotides Echvi_0639: Echvi_0639 - hypothetical protein, at 723,447 to 723,692 _0639 Echvi_0640: Echvi_0640 - hypothetical protein, at 723,799 to 724,092 _0640 Echvi_0641: Echvi_0641 - Transposase and inactivated derivatives, at 724,173 to 725,405 _0641 Echvi_0642: Echvi_0642 - pseudouridine synthase, RluA family, at 726,059 to 727,153 _0642 Position (kb) 724 725 726Strain fitness (log2 ratio) -2 -1 0 1 2at 723.265 kb on + strandat 723.265 kb on + strandat 723.266 kb on - strandat 723.266 kb on - strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.299 kb on - strandat 723.382 kb on + strandat 723.382 kb on + strandat 723.382 kb on + strandat 723.407 kb on - strandat 723.453 kb on + strandat 723.453 kb on + strandat 723.498 kb on - strand, within Echvi_0639at 723.498 kb on - strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.506 kb on + strand, within Echvi_0639at 723.506 kb on + strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.568 kb on + strand, within Echvi_0639at 723.740 kb on + strandat 723.824 kb on + strandat 723.824 kb on + strandat 723.825 kb on - strandat 723.825 kb on - strandat 723.899 kb on - strand, within Echvi_0640at 723.926 kb on - strand, within Echvi_0640at 723.983 kb on + strand, within Echvi_0640at 723.984 kb on - strand, within Echvi_0640at 724.003 kb on + strand, within Echvi_0640at 724.010 kb on - strand, within Echvi_0640at 724.010 kb on - strand, within Echvi_0640at 724.016 kb on - strand, within Echvi_0640at 724.102 kb on - strandat 725.176 kb on - strand, within Echvi_0641at 725.658 kb on - strandat 725.658 kb on - strandat 725.667 kb on + strandat 725.667 kb on + strandat 725.668 kb on - strandat 725.682 kb on - strandat 725.688 kb on - strandat 725.698 kb on + strandat 725.699 kb on - strandat 725.708 kb on + strandat 725.773 kb on + strandat 725.773 kb on + strandat 725.773 kb on + strandat 725.774 kb on - strandat 725.774 kb on - strandat 725.776 kb on + strandat 725.777 kb on - strandat 725.808 kb on + strandat 725.992 kb on - strandat 725.999 kb on - strandat 726.078 kb on + strandat 726.208 kb on + strand, within Echvi_0642at 726.209 kb on - strand, within Echvi_0642at 726.235 kb on - strand, within Echvi_0642at 726.309 kb on + strand, within Echvi_0642at 726.375 kb on + strandat 726.376 kb on - strandat 726.376 kb on - strand, within Echvi_0642

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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723,265 + +1.2
723,265 + -0.5
723,266 - +0.7
723,266 - -1.0
723,298 + -0.3
723,298 + -0.5
723,298 + +0.9
723,298 + -0.1
723,299 - -0.7
723,382 + +2.2
723,382 + +0.3
723,382 + +1.2
723,407 - -0.2
723,453 + +0.2
723,453 + +1.3
723,498 - Echvi_0639 0.21 -0.7
723,498 - Echvi_0639 0.21 +0.7
723,503 + Echvi_0639 0.23 +0.9
723,503 + Echvi_0639 0.23 -1.2
723,503 + Echvi_0639 0.23 -0.4
723,503 + Echvi_0639 0.23 -0.2
723,503 + Echvi_0639 0.23 +0.4
723,503 + Echvi_0639 0.23 +1.2
723,504 - Echvi_0639 0.23 +1.2
723,504 - Echvi_0639 0.23 -2.3
723,504 - Echvi_0639 0.23 -0.8
723,504 - Echvi_0639 0.23 -1.5
723,506 + Echvi_0639 0.24 +0.3
723,506 + Echvi_0639 0.24 -0.1
723,507 - Echvi_0639 0.24 -0.2
723,507 - Echvi_0639 0.24 +1.3
723,507 - Echvi_0639 0.24 -0.8
723,507 - Echvi_0639 0.24 -0.5
723,507 - Echvi_0639 0.24 +0.7
723,507 - Echvi_0639 0.24 +0.4
723,507 - Echvi_0639 0.24 -0.3
723,568 + Echvi_0639 0.49 -0.3
723,740 + -0.8
723,824 + +0.3
723,824 + +0.3
723,825 - -1.3
723,825 - +2.2
723,899 - Echvi_0640 0.34 +0.2
723,926 - Echvi_0640 0.43 -0.4
723,983 + Echvi_0640 0.63 -0.5
723,984 - Echvi_0640 0.63 -1.7
724,003 + Echvi_0640 0.69 +0.8
724,010 - Echvi_0640 0.72 +0.5
724,010 - Echvi_0640 0.72 -2.2
724,016 - Echvi_0640 0.74 -0.3
724,102 - -0.9
725,176 - Echvi_0641 0.81 -0.6
725,658 - -0.2
725,658 - +0.3
725,667 + -0.8
725,667 + -0.5
725,668 - +0.1
725,682 - +0.7
725,688 - +0.0
725,698 + +0.6
725,699 - -2.7
725,708 + +0.0
725,773 + +1.5
725,773 + -0.8
725,773 + -0.3
725,774 - +0.8
725,774 - -1.5
725,776 + +0.2
725,777 - -0.1
725,808 + +0.3
725,992 - -1.4
725,999 - -2.4
726,078 + -0.1
726,208 + Echvi_0642 0.14 +0.6
726,209 - Echvi_0642 0.14 +0.2
726,235 - Echvi_0642 0.16 -0.4
726,309 + Echvi_0642 0.23 +0.7
726,375 + +1.2
726,376 - +2.2
726,376 - Echvi_0642 0.29 -2.2

Or see this region's nucleotide sequence