Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0634 and Echvi_0635 are separated by 92 nucleotides Echvi_0635 and Echvi_0636 overlap by 11 nucleotides Echvi_0636 and Echvi_0637 are separated by 24 nucleotides Echvi_0637 and Echvi_0638 are separated by 82 nucleotides
Echvi_0634: Echvi_0634 - Parvulin-like peptidyl-prolyl isomerase, at 717,351 to 719,366
_0634
Echvi_0635: Echvi_0635 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 719,459 to 719,887
_0635
Echvi_0636: Echvi_0636 - anti-anti-sigma factor, at 719,877 to 720,221
_0636
Echvi_0637: Echvi_0637 - Serine phosphatase RsbU, regulator of sigma subunit, at 720,246 to 722,312
_0637
Echvi_0638: Echvi_0638 - hypothetical protein, at 722,395 to 723,111
_0638
Position (kb) 720
721
722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 719.264 kb on - strand at 719.281 kb on - strand at 719.328 kb on + strand at 719.329 kb on - strand at 719.353 kb on + strand at 719.353 kb on + strand at 719.353 kb on + strand at 719.354 kb on - strand at 719.357 kb on + strand at 719.369 kb on + strand at 719.369 kb on + strand at 719.369 kb on + strand at 719.373 kb on + strand at 719.374 kb on - strand at 719.374 kb on - strand at 719.374 kb on - strand at 719.374 kb on - strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.440 kb on - strand at 719.440 kb on - strand at 719.440 kb on - strand at 719.453 kb on + strand at 719.873 kb on + strand at 719.873 kb on + strand at 719.912 kb on + strand, within Echvi_0636 at 719.912 kb on + strand, within Echvi_0636 at 719.958 kb on + strand at 719.959 kb on - strand, within Echvi_0636 at 719.967 kb on + strand, within Echvi_0636 at 719.967 kb on + strand, within Echvi_0636 at 719.968 kb on - strand, within Echvi_0636 at 720.028 kb on + strand, within Echvi_0636 at 720.035 kb on + strand, within Echvi_0636 at 720.036 kb on - strand, within Echvi_0636 at 720.045 kb on + strand, within Echvi_0636 at 720.046 kb on - strand, within Echvi_0636 at 720.062 kb on + strand, within Echvi_0636 at 720.063 kb on - strand, within Echvi_0636 at 720.069 kb on + strand, within Echvi_0636 at 720.069 kb on + strand, within Echvi_0636 at 720.070 kb on - strand, within Echvi_0636 at 720.124 kb on - strand, within Echvi_0636 at 720.124 kb on - strand, within Echvi_0636 at 720.149 kb on + strand, within Echvi_0636 at 720.149 kb on + strand, within Echvi_0636 at 720.185 kb on + strand, within Echvi_0636 at 720.185 kb on + strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.186 kb on - strand, within Echvi_0636 at 720.209 kb on + strand at 720.210 kb on - strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.229 kb on + strand at 720.230 kb on - strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.231 kb on + strand at 720.283 kb on + strand at 720.284 kb on - strand at 720.284 kb on - strand at 720.336 kb on + strand at 720.337 kb on - strand at 720.372 kb on - strand at 720.372 kb on - strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.373 kb on + strand at 720.377 kb on + strand at 720.377 kb on + strand at 720.377 kb on + strand at 720.385 kb on - strand at 720.403 kb on + strand at 720.441 kb on - strand at 720.452 kb on + strand at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.454 kb on + strand, within Echvi_0637 at 720.455 kb on - strand, within Echvi_0637 at 720.514 kb on + strand, within Echvi_0637 at 720.518 kb on + strand, within Echvi_0637 at 720.589 kb on + strand, within Echvi_0637 at 720.589 kb on + strand, within Echvi_0637 at 720.592 kb on + strand, within Echvi_0637 at 720.627 kb on - strand, within Echvi_0637 at 720.627 kb on - strand, within Echvi_0637 at 720.656 kb on - strand, within Echvi_0637 at 720.656 kb on - strand, within Echvi_0637 at 720.659 kb on - strand, within Echvi_0637 at 720.663 kb on - strand, within Echvi_0637 at 720.663 kb on - strand, within Echvi_0637 at 720.751 kb on - strand, within Echvi_0637 at 720.751 kb on - strand, within Echvi_0637 at 720.751 kb on - strand, within Echvi_0637 at 720.788 kb on + strand, within Echvi_0637 at 720.789 kb on - strand, within Echvi_0637 at 720.789 kb on - strand, within Echvi_0637 at 720.868 kb on + strand, within Echvi_0637 at 720.872 kb on - strand, within Echvi_0637 at 720.882 kb on + strand, within Echvi_0637 at 720.929 kb on + strand, within Echvi_0637 at 720.993 kb on - strand, within Echvi_0637 at 721.077 kb on - strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.079 kb on + strand, within Echvi_0637 at 721.115 kb on + strand, within Echvi_0637 at 721.116 kb on - strand, within Echvi_0637 at 721.145 kb on + strand, within Echvi_0637 at 721.145 kb on + strand, within Echvi_0637 at 721.145 kb on + strand, within Echvi_0637 at 721.146 kb on - strand, within Echvi_0637 at 721.146 kb on - strand, within Echvi_0637 at 721.146 kb on - strand, within Echvi_0637 at 721.150 kb on - strand, within Echvi_0637 at 721.290 kb on - strand, within Echvi_0637 at 721.290 kb on - strand, within Echvi_0637 at 721.298 kb on + strand, within Echvi_0637 at 721.298 kb on + strand, within Echvi_0637 at 721.350 kb on + strand, within Echvi_0637 at 721.405 kb on - strand, within Echvi_0637 at 721.405 kb on - strand, within Echvi_0637 at 721.452 kb on + strand, within Echvi_0637 at 721.478 kb on + strand, within Echvi_0637 at 721.479 kb on - strand, within Echvi_0637 at 721.514 kb on + strand, within Echvi_0637 at 721.514 kb on + strand, within Echvi_0637 at 721.742 kb on + strand, within Echvi_0637 at 721.810 kb on + strand, within Echvi_0637 at 721.811 kb on - strand, within Echvi_0637 at 721.813 kb on - strand, within Echvi_0637 at 721.813 kb on - strand, within Echvi_0637 at 721.816 kb on + strand, within Echvi_0637 at 721.817 kb on - strand, within Echvi_0637 at 721.823 kb on + strand, within Echvi_0637 at 721.823 kb on + strand, within Echvi_0637 at 721.823 kb on + strand, within Echvi_0637 at 721.831 kb on - strand, within Echvi_0637 at 721.846 kb on + strand, within Echvi_0637 at 721.847 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.849 kb on - strand, within Echvi_0637 at 721.868 kb on + strand, within Echvi_0637 at 721.886 kb on - strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.985 kb on + strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.986 kb on - strand, within Echvi_0637 at 721.988 kb on + strand, within Echvi_0637 at 721.989 kb on - strand, within Echvi_0637 at 721.989 kb on - strand, within Echvi_0637 at 721.997 kb on + strand, within Echvi_0637 at 721.997 kb on + strand, within Echvi_0637 at 722.012 kb on + strand, within Echvi_0637 at 722.014 kb on + strand, within Echvi_0637 at 722.094 kb on - strand, within Echvi_0637 at 722.094 kb on - strand, within Echvi_0637 at 722.125 kb on + strand at 722.134 kb on + strand at 722.171 kb on + strand at 722.171 kb on + strand at 722.172 kb on - strand at 722.277 kb on + strand at 722.277 kb on + strand at 722.278 kb on - strand at 722.292 kb on + strand at 722.293 kb on - strand at 722.314 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.333 kb on + strand at 722.334 kb on - strand at 722.337 kb on + strand at 722.337 kb on + strand at 722.338 kb on - strand at 722.338 kb on - strand at 722.367 kb on + strand at 722.432 kb on + strand at 722.432 kb on + strand at 722.433 kb on - strand at 722.591 kb on - strand, within Echvi_0638 at 722.659 kb on - strand, within Echvi_0638 at 722.742 kb on + strand, within Echvi_0638 at 722.743 kb on - strand, within Echvi_0638 at 722.748 kb on + strand, within Echvi_0638 at 722.797 kb on - strand, within Echvi_0638 at 722.829 kb on - strand, within Echvi_0638 at 722.912 kb on - strand, within Echvi_0638 at 722.914 kb on + strand, within Echvi_0638 at 722.914 kb on + strand, within Echvi_0638 at 722.915 kb on - strand, within Echvi_0638 at 722.915 kb on - strand, within Echvi_0638 at 722.986 kb on + strand, within Echvi_0638 at 722.986 kb on + strand, within Echvi_0638 at 722.987 kb on - strand, within Echvi_0638 at 723.005 kb on + strand, within Echvi_0638 at 723.093 kb on - strand at 723.109 kb on + strand at 723.127 kb on - strand at 723.149 kb on - strand at 723.156 kb on + strand at 723.156 kb on + strand at 723.157 kb on - strand at 723.265 kb on + strand at 723.265 kb on + strand at 723.266 kb on - strand at 723.266 kb on - strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.298 kb on + strand at 723.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 719,264 - -2.3 719,281 - -2.9 719,328 + -2.4 719,329 - -2.9 719,353 + -1.4 719,353 + -1.3 719,353 + -2.4 719,354 - -1.9 719,357 + -3.3 719,369 + -0.2 719,369 + -2.4 719,369 + -1.8 719,373 + -0.7 719,374 - -1.0 719,374 - +0.5 719,374 - +0.0 719,374 - +2.6 719,439 + -2.6 719,439 + -3.3 719,439 + -2.4 719,439 + -2.9 719,439 + -1.9 719,439 + -1.1 719,439 + -0.6 719,439 + +0.1 719,440 - +0.1 719,440 - -1.4 719,440 - -2.2 719,453 + -1.1 719,873 + +1.5 719,873 + +0.5 719,912 + Echvi_0636 0.10 -1.9 719,912 + Echvi_0636 0.10 -0.2 719,958 + +2.1 719,959 - Echvi_0636 0.24 -2.9 719,967 + Echvi_0636 0.26 -2.7 719,967 + Echvi_0636 0.26 +1.4 719,968 - Echvi_0636 0.26 -1.3 720,028 + Echvi_0636 0.44 -0.3 720,035 + Echvi_0636 0.46 +1.7 720,036 - Echvi_0636 0.46 -0.9 720,045 + Echvi_0636 0.49 -1.2 720,046 - Echvi_0636 0.49 -0.6 720,062 + Echvi_0636 0.54 -1.1 720,063 - Echvi_0636 0.54 -1.4 720,069 + Echvi_0636 0.56 -0.8 720,069 + Echvi_0636 0.56 -2.1 720,070 - Echvi_0636 0.56 -0.3 720,124 - Echvi_0636 0.72 -0.4 720,124 - Echvi_0636 0.72 -0.4 720,149 + Echvi_0636 0.79 +0.1 720,149 + Echvi_0636 0.79 -0.9 720,185 + Echvi_0636 0.89 -0.9 720,185 + Echvi_0636 0.89 -2.5 720,186 - Echvi_0636 0.90 -0.0 720,186 - Echvi_0636 0.90 -2.7 720,186 - Echvi_0636 0.90 +0.4 720,186 - Echvi_0636 0.90 -0.3 720,209 + +1.1 720,210 - +0.3 720,221 + -0.7 720,221 + -1.0 720,221 + +0.3 720,222 - +2.1 720,222 - -0.5 720,222 - +0.4 720,229 + -0.2 720,230 - -0.2 720,231 + +0.6 720,231 + +2.7 720,231 + -0.5 720,231 + +1.1 720,231 + -0.3 720,231 + -2.2 720,283 + +1.1 720,284 - -0.4 720,284 - -1.8 720,336 + -1.3 720,337 - +0.8 720,372 - +0.8 720,372 - -1.9 720,373 + -0.4 720,373 + -0.7 720,373 + -2.6 720,373 + -1.2 720,373 + -1.2 720,373 + +0.1 720,377 + -2.2 720,377 + -1.3 720,377 + +0.3 720,385 - +0.6 720,403 + -0.4 720,441 - -0.6 720,452 + -2.1 720,454 + Echvi_0637 0.10 -0.8 720,454 + Echvi_0637 0.10 -1.6 720,454 + Echvi_0637 0.10 -1.8 720,454 + Echvi_0637 0.10 -1.2 720,454 + Echvi_0637 0.10 -1.2 720,455 - Echvi_0637 0.10 -0.5 720,514 + Echvi_0637 0.13 -0.4 720,518 + Echvi_0637 0.13 -2.3 720,589 + Echvi_0637 0.17 +0.6 720,589 + Echvi_0637 0.17 -0.6 720,592 + Echvi_0637 0.17 +0.0 720,627 - Echvi_0637 0.18 -0.4 720,627 - Echvi_0637 0.18 -0.4 720,656 - Echvi_0637 0.20 -0.4 720,656 - Echvi_0637 0.20 -0.5 720,659 - Echvi_0637 0.20 +0.4 720,663 - Echvi_0637 0.20 -1.2 720,663 - Echvi_0637 0.20 +1.0 720,751 - Echvi_0637 0.24 -2.5 720,751 - Echvi_0637 0.24 -1.2 720,751 - Echvi_0637 0.24 -2.7 720,788 + Echvi_0637 0.26 -0.7 720,789 - Echvi_0637 0.26 +0.6 720,789 - Echvi_0637 0.26 -1.0 720,868 + Echvi_0637 0.30 -1.7 720,872 - Echvi_0637 0.30 +0.2 720,882 + Echvi_0637 0.31 -1.2 720,929 + Echvi_0637 0.33 -1.1 720,993 - Echvi_0637 0.36 -0.6 721,077 - Echvi_0637 0.40 +0.9 721,079 + Echvi_0637 0.40 -1.5 721,079 + Echvi_0637 0.40 -1.1 721,079 + Echvi_0637 0.40 -1.9 721,079 + Echvi_0637 0.40 -1.8 721,115 + Echvi_0637 0.42 -1.3 721,116 - Echvi_0637 0.42 +1.4 721,145 + Echvi_0637 0.43 -1.0 721,145 + Echvi_0637 0.43 -1.5 721,145 + Echvi_0637 0.43 +0.6 721,146 - Echvi_0637 0.44 +1.0 721,146 - Echvi_0637 0.44 +2.3 721,146 - Echvi_0637 0.44 -0.6 721,150 - Echvi_0637 0.44 +2.0 721,290 - Echvi_0637 0.51 -0.7 721,290 - Echvi_0637 0.51 -1.6 721,298 + Echvi_0637 0.51 +0.9 721,298 + Echvi_0637 0.51 -0.1 721,350 + Echvi_0637 0.53 -1.4 721,405 - Echvi_0637 0.56 -3.0 721,405 - Echvi_0637 0.56 -1.5 721,452 + Echvi_0637 0.58 -0.7 721,478 + Echvi_0637 0.60 -1.0 721,479 - Echvi_0637 0.60 -2.5 721,514 + Echvi_0637 0.61 -0.9 721,514 + Echvi_0637 0.61 -1.1 721,742 + Echvi_0637 0.72 -0.8 721,810 + Echvi_0637 0.76 -0.0 721,811 - Echvi_0637 0.76 -0.3 721,813 - Echvi_0637 0.76 +1.2 721,813 - Echvi_0637 0.76 -1.8 721,816 + Echvi_0637 0.76 -0.4 721,817 - Echvi_0637 0.76 +1.7 721,823 + Echvi_0637 0.76 -1.4 721,823 + Echvi_0637 0.76 -2.4 721,823 + Echvi_0637 0.76 -1.4 721,831 - Echvi_0637 0.77 -0.5 721,846 + Echvi_0637 0.77 -1.7 721,847 - Echvi_0637 0.77 -2.3 721,849 - Echvi_0637 0.78 +1.6 721,849 - Echvi_0637 0.78 -1.1 721,849 - Echvi_0637 0.78 -1.7 721,849 - Echvi_0637 0.78 +0.6 721,849 - Echvi_0637 0.78 +0.2 721,868 + Echvi_0637 0.78 -0.1 721,886 - Echvi_0637 0.79 -1.1 721,985 + Echvi_0637 0.84 -0.1 721,985 + Echvi_0637 0.84 -1.8 721,985 + Echvi_0637 0.84 +1.2 721,985 + Echvi_0637 0.84 -0.5 721,986 - Echvi_0637 0.84 -1.1 721,986 - Echvi_0637 0.84 -1.8 721,986 - Echvi_0637 0.84 +0.6 721,986 - Echvi_0637 0.84 +0.6 721,988 + Echvi_0637 0.84 -0.8 721,989 - Echvi_0637 0.84 -1.7 721,989 - Echvi_0637 0.84 -1.2 721,997 + Echvi_0637 0.85 +0.2 721,997 + Echvi_0637 0.85 -1.9 722,012 + Echvi_0637 0.85 -0.8 722,014 + Echvi_0637 0.86 +0.6 722,094 - Echvi_0637 0.89 -3.4 722,094 - Echvi_0637 0.89 -0.4 722,125 + -2.3 722,134 + -2.5 722,171 + -0.4 722,171 + -0.2 722,172 - +0.3 722,277 + -0.4 722,277 + +1.4 722,278 - +0.3 722,292 + -1.5 722,293 - -1.1 722,314 + -0.6 722,333 + +1.2 722,333 + -0.1 722,333 + -1.7 722,333 + -1.2 722,333 + -0.4 722,334 - +1.8 722,337 + -1.3 722,337 + -0.9 722,338 - +1.3 722,338 - -0.2 722,367 + +0.2 722,432 + +1.1 722,432 + +0.7 722,433 - -0.7 722,591 - Echvi_0638 0.27 +0.2 722,659 - Echvi_0638 0.37 -1.0 722,742 + Echvi_0638 0.48 -1.7 722,743 - Echvi_0638 0.49 -0.2 722,748 + Echvi_0638 0.49 -0.7 722,797 - Echvi_0638 0.56 -1.0 722,829 - Echvi_0638 0.61 +1.2 722,912 - Echvi_0638 0.72 +0.8 722,914 + Echvi_0638 0.72 -0.7 722,914 + Echvi_0638 0.72 +0.1 722,915 - Echvi_0638 0.73 -0.2 722,915 - Echvi_0638 0.73 -0.4 722,986 + Echvi_0638 0.82 -0.0 722,986 + Echvi_0638 0.82 +1.2 722,987 - Echvi_0638 0.83 -0.7 723,005 + Echvi_0638 0.85 +2.7 723,093 - -0.4 723,109 + +0.3 723,127 - -0.7 723,149 - -2.5 723,156 + -0.5 723,156 + +0.8 723,157 - -1.2 723,265 + +1.2 723,265 + -0.5 723,266 - +0.7 723,266 - -1.0 723,298 + -0.3 723,298 + -0.5 723,298 + +0.9 723,298 + -0.1 723,299 - -0.7
Or see this region's nucleotide sequence