Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0616 and Echvi_0617 are separated by 120 nucleotides Echvi_0617 and Echvi_0618 overlap by 38 nucleotides
Echvi_0616: Echvi_0616 - Membrane proteins related to metalloendopeptidases, at 689,263 to 690,141
_0616
Echvi_0617: Echvi_0617 - hypothetical protein, at 690,262 to 692,892
_0617
Echvi_0618: Echvi_0618 - Membrane carboxypeptidase/penicillin-binding protein, at 692,855 to 695,212
_0618
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 689.278 kb on - strand at 689.309 kb on + strand at 689.309 kb on + strand at 689.310 kb on - strand at 689.310 kb on - strand at 689.314 kb on + strand at 689.315 kb on - strand at 689.315 kb on - strand at 689.315 kb on - strand at 689.355 kb on + strand, within Echvi_0616 at 689.356 kb on - strand, within Echvi_0616 at 689.356 kb on - strand, within Echvi_0616 at 689.414 kb on - strand, within Echvi_0616 at 689.416 kb on + strand, within Echvi_0616 at 689.417 kb on - strand, within Echvi_0616 at 689.424 kb on + strand, within Echvi_0616 at 689.467 kb on + strand, within Echvi_0616 at 689.474 kb on + strand, within Echvi_0616 at 689.474 kb on + strand, within Echvi_0616 at 689.474 kb on + strand, within Echvi_0616 at 689.475 kb on - strand, within Echvi_0616 at 689.475 kb on - strand, within Echvi_0616 at 689.653 kb on - strand, within Echvi_0616 at 689.653 kb on - strand, within Echvi_0616 at 689.734 kb on + strand at 689.838 kb on + strand, within Echvi_0616 at 689.842 kb on - strand, within Echvi_0616 at 689.842 kb on - strand, within Echvi_0616 at 689.849 kb on + strand, within Echvi_0616 at 689.866 kb on + strand, within Echvi_0616 at 689.867 kb on - strand, within Echvi_0616 at 689.906 kb on + strand, within Echvi_0616 at 689.906 kb on + strand, within Echvi_0616 at 689.907 kb on - strand, within Echvi_0616 at 689.907 kb on - strand, within Echvi_0616 at 689.908 kb on + strand, within Echvi_0616 at 689.974 kb on + strand, within Echvi_0616 at 689.977 kb on + strand, within Echvi_0616 at 689.977 kb on + strand, within Echvi_0616 at 689.978 kb on - strand, within Echvi_0616 at 690.010 kb on - strand, within Echvi_0616 at 690.021 kb on + strand, within Echvi_0616 at 690.050 kb on - strand, within Echvi_0616 at 690.050 kb on - strand, within Echvi_0616 at 690.098 kb on + strand at 690.102 kb on + strand at 690.134 kb on - strand at 690.155 kb on + strand at 690.171 kb on - strand at 690.174 kb on - strand at 690.190 kb on - strand at 690.225 kb on + strand at 690.336 kb on + strand at 690.337 kb on - strand at 690.349 kb on + strand at 690.349 kb on + strand at 690.349 kb on + strand at 690.380 kb on - strand at 690.401 kb on + strand at 690.401 kb on + strand at 690.402 kb on - strand at 690.423 kb on + strand at 690.423 kb on + strand at 690.433 kb on + strand at 690.434 kb on - strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.445 kb on + strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.446 kb on - strand at 690.447 kb on + strand at 690.448 kb on - strand at 690.448 kb on - strand at 690.448 kb on - strand at 690.466 kb on + strand at 690.466 kb on + strand at 690.467 kb on - strand at 690.572 kb on + strand, within Echvi_0617 at 690.572 kb on + strand, within Echvi_0617 at 690.583 kb on + strand, within Echvi_0617 at 690.583 kb on + strand, within Echvi_0617 at 690.584 kb on - strand, within Echvi_0617 at 690.584 kb on - strand, within Echvi_0617 at 690.610 kb on + strand, within Echvi_0617 at 690.611 kb on - strand, within Echvi_0617 at 690.636 kb on + strand, within Echvi_0617 at 690.643 kb on + strand, within Echvi_0617 at 690.644 kb on - strand, within Echvi_0617 at 690.650 kb on - strand, within Echvi_0617 at 690.650 kb on - strand, within Echvi_0617 at 690.659 kb on + strand, within Echvi_0617 at 690.660 kb on - strand, within Echvi_0617 at 690.719 kb on + strand, within Echvi_0617 at 690.748 kb on + strand, within Echvi_0617 at 690.748 kb on + strand, within Echvi_0617 at 690.748 kb on + strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.749 kb on - strand, within Echvi_0617 at 690.808 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.826 kb on + strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.827 kb on - strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.829 kb on + strand, within Echvi_0617 at 690.830 kb on - strand, within Echvi_0617 at 690.830 kb on - strand, within Echvi_0617 at 690.924 kb on + strand, within Echvi_0617 at 690.924 kb on + strand, within Echvi_0617 at 690.941 kb on - strand, within Echvi_0617 at 690.980 kb on - strand, within Echvi_0617 at 691.009 kb on + strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.035 kb on - strand, within Echvi_0617 at 691.036 kb on + strand, within Echvi_0617 at 691.036 kb on + strand, within Echvi_0617 at 691.037 kb on - strand, within Echvi_0617 at 691.077 kb on + strand, within Echvi_0617 at 691.077 kb on + strand, within Echvi_0617 at 691.078 kb on - strand, within Echvi_0617 at 691.096 kb on + strand, within Echvi_0617 at 691.097 kb on - strand, within Echvi_0617 at 691.108 kb on + strand, within Echvi_0617 at 691.109 kb on - strand, within Echvi_0617 at 691.109 kb on - strand, within Echvi_0617 at 691.110 kb on + strand, within Echvi_0617 at 691.110 kb on + strand, within Echvi_0617 at 691.110 kb on + strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.111 kb on - strand, within Echvi_0617 at 691.257 kb on + strand, within Echvi_0617 at 691.257 kb on + strand, within Echvi_0617 at 691.257 kb on + strand, within Echvi_0617 at 691.257 kb on + strand, within Echvi_0617 at 691.257 kb on + strand, within Echvi_0617 at 691.258 kb on - strand, within Echvi_0617 at 691.280 kb on + strand, within Echvi_0617 at 691.281 kb on - strand, within Echvi_0617 at 691.318 kb on + strand, within Echvi_0617 at 691.319 kb on - strand, within Echvi_0617 at 691.319 kb on - strand, within Echvi_0617 at 691.322 kb on - strand, within Echvi_0617 at 691.322 kb on - strand, within Echvi_0617 at 691.322 kb on - strand, within Echvi_0617 at 691.366 kb on + strand, within Echvi_0617 at 691.366 kb on + strand, within Echvi_0617 at 691.366 kb on + strand, within Echvi_0617 at 691.394 kb on + strand, within Echvi_0617 at 691.405 kb on + strand, within Echvi_0617 at 691.406 kb on - strand, within Echvi_0617 at 691.417 kb on + strand, within Echvi_0617 at 691.417 kb on + strand, within Echvi_0617 at 691.418 kb on - strand, within Echvi_0617 at 691.424 kb on + strand, within Echvi_0617 at 691.425 kb on - strand, within Echvi_0617 at 691.611 kb on + strand, within Echvi_0617 at 691.611 kb on + strand, within Echvi_0617 at 691.612 kb on - strand, within Echvi_0617 at 691.612 kb on - strand, within Echvi_0617 at 691.612 kb on - strand, within Echvi_0617 at 691.612 kb on - strand, within Echvi_0617 at 691.618 kb on + strand, within Echvi_0617 at 691.618 kb on + strand, within Echvi_0617 at 691.803 kb on + strand, within Echvi_0617 at 691.804 kb on - strand, within Echvi_0617 at 691.951 kb on + strand, within Echvi_0617 at 692.005 kb on + strand, within Echvi_0617 at 692.006 kb on - strand, within Echvi_0617 at 692.006 kb on - strand, within Echvi_0617 at 692.009 kb on - strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.056 kb on + strand, within Echvi_0617 at 692.056 kb on + strand, within Echvi_0617 at 692.057 kb on - strand, within Echvi_0617 at 692.057 kb on - strand, within Echvi_0617 at 692.169 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.204 kb on - strand, within Echvi_0617 at 692.245 kb on + strand, within Echvi_0617 at 692.246 kb on - strand, within Echvi_0617 at 692.261 kb on + strand, within Echvi_0617 at 692.262 kb on - strand, within Echvi_0617 at 692.273 kb on + strand, within Echvi_0617 at 692.273 kb on + strand, within Echvi_0617 at 692.344 kb on + strand, within Echvi_0617 at 692.345 kb on - strand, within Echvi_0617 at 692.347 kb on - strand, within Echvi_0617 at 692.391 kb on + strand, within Echvi_0617 at 692.391 kb on + strand, within Echvi_0617 at 692.396 kb on + strand, within Echvi_0617 at 692.397 kb on - strand, within Echvi_0617 at 692.469 kb on - strand, within Echvi_0617 at 692.505 kb on + strand, within Echvi_0617 at 692.528 kb on + strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.530 kb on + strand, within Echvi_0617 at 692.531 kb on - strand, within Echvi_0617 at 692.531 kb on - strand, within Echvi_0617 at 692.532 kb on + strand, within Echvi_0617 at 692.533 kb on - strand, within Echvi_0617 at 692.533 kb on - strand, within Echvi_0617 at 692.533 kb on - strand, within Echvi_0617 at 692.558 kb on + strand, within Echvi_0617 at 692.635 kb on - strand at 692.658 kb on - strand at 692.770 kb on + strand at 692.792 kb on + strand at 692.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 689,278 - +0.9 689,309 + -0.2 689,309 + -1.9 689,310 - +0.6 689,310 - +1.7 689,314 + +0.3 689,315 - +0.0 689,315 - -0.7 689,315 - +2.7 689,355 + Echvi_0616 0.10 +0.3 689,356 - Echvi_0616 0.11 -1.9 689,356 - Echvi_0616 0.11 +0.6 689,414 - Echvi_0616 0.17 +0.1 689,416 + Echvi_0616 0.17 -0.2 689,417 - Echvi_0616 0.18 -0.1 689,424 + Echvi_0616 0.18 -0.7 689,467 + Echvi_0616 0.23 -1.3 689,474 + Echvi_0616 0.24 -0.2 689,474 + Echvi_0616 0.24 +2.1 689,474 + Echvi_0616 0.24 -1.3 689,475 - Echvi_0616 0.24 -0.2 689,475 - Echvi_0616 0.24 +0.4 689,653 - Echvi_0616 0.44 -1.4 689,653 - Echvi_0616 0.44 -1.4 689,734 + +1.1 689,838 + Echvi_0616 0.65 -2.7 689,842 - Echvi_0616 0.66 -0.2 689,842 - Echvi_0616 0.66 +0.2 689,849 + Echvi_0616 0.67 -2.7 689,866 + Echvi_0616 0.69 -1.5 689,867 - Echvi_0616 0.69 -0.4 689,906 + Echvi_0616 0.73 -2.1 689,906 + Echvi_0616 0.73 -2.8 689,907 - Echvi_0616 0.73 -0.7 689,907 - Echvi_0616 0.73 +1.5 689,908 + Echvi_0616 0.73 -2.1 689,974 + Echvi_0616 0.81 -2.4 689,977 + Echvi_0616 0.81 -1.9 689,977 + Echvi_0616 0.81 -2.1 689,978 - Echvi_0616 0.81 -0.0 690,010 - Echvi_0616 0.85 +2.5 690,021 + Echvi_0616 0.86 -1.5 690,050 - Echvi_0616 0.90 +1.6 690,050 - Echvi_0616 0.90 -0.1 690,098 + -2.6 690,102 + -1.0 690,134 - -1.2 690,155 + -4.0 690,171 - +0.3 690,174 - -1.8 690,190 - -0.6 690,225 + -1.6 690,336 + +3.5 690,337 - +3.9 690,349 + +3.9 690,349 + +3.4 690,349 + +3.4 690,380 - +3.3 690,401 + +2.0 690,401 + +3.4 690,402 - +3.8 690,423 + +3.6 690,423 + +3.2 690,433 + +3.3 690,434 - +3.4 690,445 + +3.1 690,445 + +3.7 690,445 + +3.7 690,445 + +3.9 690,445 + +3.3 690,446 - +3.8 690,446 - +3.4 690,446 - +3.8 690,446 - +3.8 690,446 - +4.1 690,446 - +3.8 690,447 + +3.5 690,448 - +4.2 690,448 - +4.1 690,448 - +2.9 690,466 + +3.0 690,466 + +2.1 690,467 - +3.8 690,572 + Echvi_0617 0.12 +3.8 690,572 + Echvi_0617 0.12 +3.8 690,583 + Echvi_0617 0.12 +2.9 690,583 + Echvi_0617 0.12 +2.1 690,584 - Echvi_0617 0.12 +3.6 690,584 - Echvi_0617 0.12 +2.8 690,610 + Echvi_0617 0.13 +2.4 690,611 - Echvi_0617 0.13 +3.9 690,636 + Echvi_0617 0.14 +1.6 690,643 + Echvi_0617 0.14 +3.5 690,644 - Echvi_0617 0.15 +4.5 690,650 - Echvi_0617 0.15 +4.0 690,650 - Echvi_0617 0.15 +4.1 690,659 + Echvi_0617 0.15 +4.0 690,660 - Echvi_0617 0.15 +3.9 690,719 + Echvi_0617 0.17 +3.6 690,748 + Echvi_0617 0.18 +3.6 690,748 + Echvi_0617 0.18 +3.3 690,748 + Echvi_0617 0.18 +3.0 690,749 - Echvi_0617 0.19 +4.2 690,749 - Echvi_0617 0.19 +5.3 690,749 - Echvi_0617 0.19 +4.1 690,749 - Echvi_0617 0.19 +4.1 690,749 - Echvi_0617 0.19 +4.0 690,749 - Echvi_0617 0.19 +3.9 690,749 - Echvi_0617 0.19 +3.8 690,808 + Echvi_0617 0.21 +3.5 690,826 + Echvi_0617 0.21 +3.7 690,826 + Echvi_0617 0.21 +3.2 690,826 + Echvi_0617 0.21 +4.2 690,826 + Echvi_0617 0.21 +3.8 690,826 + Echvi_0617 0.21 +3.2 690,827 - Echvi_0617 0.21 +4.0 690,827 - Echvi_0617 0.21 +3.9 690,827 - Echvi_0617 0.21 +3.2 690,827 - Echvi_0617 0.21 +4.1 690,827 - Echvi_0617 0.21 +4.2 690,829 + Echvi_0617 0.22 +3.2 690,829 + Echvi_0617 0.22 +3.3 690,829 + Echvi_0617 0.22 +3.7 690,829 + Echvi_0617 0.22 +2.1 690,829 + Echvi_0617 0.22 +3.6 690,829 + Echvi_0617 0.22 +3.3 690,830 - Echvi_0617 0.22 +4.9 690,830 - Echvi_0617 0.22 +4.2 690,924 + Echvi_0617 0.25 +3.2 690,924 + Echvi_0617 0.25 +3.3 690,941 - Echvi_0617 0.26 +3.9 690,980 - Echvi_0617 0.27 +4.2 691,009 + Echvi_0617 0.28 +3.3 691,035 - Echvi_0617 0.29 +1.1 691,035 - Echvi_0617 0.29 +4.2 691,035 - Echvi_0617 0.29 +3.1 691,035 - Echvi_0617 0.29 +3.1 691,036 + Echvi_0617 0.29 +2.6 691,036 + Echvi_0617 0.29 +3.1 691,037 - Echvi_0617 0.29 +3.6 691,077 + Echvi_0617 0.31 +2.5 691,077 + Echvi_0617 0.31 +3.0 691,078 - Echvi_0617 0.31 +3.2 691,096 + Echvi_0617 0.32 +1.5 691,097 - Echvi_0617 0.32 +2.7 691,108 + Echvi_0617 0.32 +1.6 691,109 - Echvi_0617 0.32 +3.0 691,109 - Echvi_0617 0.32 +2.3 691,110 + Echvi_0617 0.32 +2.5 691,110 + Echvi_0617 0.32 +2.8 691,110 + Echvi_0617 0.32 +3.1 691,111 - Echvi_0617 0.32 +4.0 691,111 - Echvi_0617 0.32 +3.1 691,111 - Echvi_0617 0.32 +3.7 691,111 - Echvi_0617 0.32 +2.9 691,257 + Echvi_0617 0.38 +3.2 691,257 + Echvi_0617 0.38 +3.2 691,257 + Echvi_0617 0.38 +3.0 691,257 + Echvi_0617 0.38 +2.6 691,257 + Echvi_0617 0.38 +3.4 691,258 - Echvi_0617 0.38 +3.6 691,280 + Echvi_0617 0.39 +2.0 691,281 - Echvi_0617 0.39 +2.6 691,318 + Echvi_0617 0.40 +1.1 691,319 - Echvi_0617 0.40 +4.3 691,319 - Echvi_0617 0.40 +3.5 691,322 - Echvi_0617 0.40 +3.6 691,322 - Echvi_0617 0.40 +3.1 691,322 - Echvi_0617 0.40 +3.7 691,366 + Echvi_0617 0.42 -0.3 691,366 + Echvi_0617 0.42 +0.1 691,366 + Echvi_0617 0.42 +0.5 691,394 + Echvi_0617 0.43 +0.8 691,405 + Echvi_0617 0.43 +0.6 691,406 - Echvi_0617 0.43 +1.3 691,417 + Echvi_0617 0.44 -0.7 691,417 + Echvi_0617 0.44 +0.2 691,418 - Echvi_0617 0.44 +1.6 691,424 + Echvi_0617 0.44 +0.3 691,425 - Echvi_0617 0.44 +1.0 691,611 + Echvi_0617 0.51 -0.7 691,611 + Echvi_0617 0.51 -0.3 691,612 - Echvi_0617 0.51 +1.1 691,612 - Echvi_0617 0.51 +0.3 691,612 - Echvi_0617 0.51 +0.8 691,612 - Echvi_0617 0.51 +0.4 691,618 + Echvi_0617 0.52 -1.0 691,618 + Echvi_0617 0.52 -1.3 691,803 + Echvi_0617 0.59 -1.9 691,804 - Echvi_0617 0.59 +0.9 691,951 + Echvi_0617 0.64 -2.5 692,005 + Echvi_0617 0.66 -3.3 692,006 - Echvi_0617 0.66 -0.3 692,006 - Echvi_0617 0.66 +1.0 692,009 - Echvi_0617 0.66 +0.8 692,017 + Echvi_0617 0.67 -2.1 692,017 + Echvi_0617 0.67 -0.9 692,017 + Echvi_0617 0.67 -3.7 692,017 + Echvi_0617 0.67 -3.3 692,056 + Echvi_0617 0.68 -2.3 692,056 + Echvi_0617 0.68 -1.0 692,057 - Echvi_0617 0.68 +1.1 692,057 - Echvi_0617 0.68 +2.0 692,169 + Echvi_0617 0.72 -2.2 692,179 + Echvi_0617 0.73 -3.2 692,179 + Echvi_0617 0.73 -0.9 692,179 + Echvi_0617 0.73 -3.1 692,179 + Echvi_0617 0.73 -3.4 692,204 - Echvi_0617 0.74 +0.3 692,245 + Echvi_0617 0.75 -0.2 692,246 - Echvi_0617 0.75 +3.5 692,261 + Echvi_0617 0.76 -1.9 692,262 - Echvi_0617 0.76 +0.3 692,273 + Echvi_0617 0.76 -4.2 692,273 + Echvi_0617 0.76 -1.2 692,344 + Echvi_0617 0.79 -2.4 692,345 - Echvi_0617 0.79 +1.0 692,347 - Echvi_0617 0.79 +1.4 692,391 + Echvi_0617 0.81 -3.3 692,391 + Echvi_0617 0.81 -3.1 692,396 + Echvi_0617 0.81 -2.0 692,397 - Echvi_0617 0.81 +0.9 692,469 - Echvi_0617 0.84 +0.6 692,505 + Echvi_0617 0.85 -1.2 692,528 + Echvi_0617 0.86 -1.9 692,529 - Echvi_0617 0.86 +0.9 692,529 - Echvi_0617 0.86 -0.2 692,529 - Echvi_0617 0.86 +1.2 692,529 - Echvi_0617 0.86 +0.7 692,529 - Echvi_0617 0.86 +1.6 692,529 - Echvi_0617 0.86 +0.0 692,530 + Echvi_0617 0.86 -1.9 692,531 - Echvi_0617 0.86 +2.7 692,531 - Echvi_0617 0.86 +1.7 692,532 + Echvi_0617 0.86 -2.3 692,533 - Echvi_0617 0.86 +0.2 692,533 - Echvi_0617 0.86 +0.6 692,533 - Echvi_0617 0.86 +1.0 692,558 + Echvi_0617 0.87 -1.8 692,635 - +0.2 692,658 - +0.8 692,770 + -1.3 692,792 + +0.6 692,837 + -2.6
Or see this region's nucleotide sequence