Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0601

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0600 and Echvi_0601 are separated by 153 nucleotidesEchvi_0601 and Echvi_0602 are separated by 18 nucleotides Echvi_0600: Echvi_0600 - L-serine dehydratase, iron-sulfur-dependent, alpha subunit, at 676,693 to 677,601 _0600 Echvi_0601: Echvi_0601 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 677,755 to 678,714 _0601 Echvi_0602: Echvi_0602 - hypothetical protein, at 678,733 to 680,112 _0602 Position (kb) 677 678 679Strain fitness (log2 ratio) -2 -1 0 1 2 3at 676.809 kb on + strand, within Echvi_0600at 676.847 kb on - strand, within Echvi_0600at 676.876 kb on - strand, within Echvi_0600at 676.949 kb on - strand, within Echvi_0600at 676.987 kb on + strand, within Echvi_0600at 676.988 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 676.993 kb on - strand, within Echvi_0600at 677.034 kb on + strand, within Echvi_0600at 677.051 kb on + strand, within Echvi_0600at 677.215 kb on + strand, within Echvi_0600at 677.221 kb on - strand, within Echvi_0600at 677.223 kb on - strand, within Echvi_0600at 677.269 kb on + strand, within Echvi_0600at 677.269 kb on + strand, within Echvi_0600at 677.283 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.366 kb on + strand, within Echvi_0600at 677.367 kb on - strand, within Echvi_0600at 677.367 kb on - strand, within Echvi_0600at 677.450 kb on - strand, within Echvi_0600at 677.454 kb on + strand, within Echvi_0600at 677.455 kb on - strand, within Echvi_0600at 677.456 kb on + strand, within Echvi_0600at 677.456 kb on + strand, within Echvi_0600at 677.534 kb on + strandat 677.594 kb on + strandat 677.614 kb on + strandat 677.615 kb on - strandat 677.615 kb on - strandat 677.616 kb on + strandat 677.617 kb on - strandat 677.622 kb on - strandat 677.770 kb on + strandat 677.770 kb on + strandat 677.797 kb on - strandat 677.806 kb on + strandat 677.834 kb on + strandat 677.874 kb on + strand, within Echvi_0601at 677.960 kb on + strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.961 kb on - strand, within Echvi_0601at 677.964 kb on + strand, within Echvi_0601at 677.994 kb on + strand, within Echvi_0601at 677.997 kb on + strand, within Echvi_0601at 678.120 kb on - strand, within Echvi_0601at 678.120 kb on - strand, within Echvi_0601at 678.220 kb on + strand, within Echvi_0601at 678.278 kb on + strand, within Echvi_0601at 678.278 kb on + strand, within Echvi_0601at 678.302 kb on + strand, within Echvi_0601at 678.314 kb on + strand, within Echvi_0601at 678.315 kb on - strand, within Echvi_0601at 678.369 kb on + strand, within Echvi_0601at 678.398 kb on + strand, within Echvi_0601at 678.399 kb on - strand, within Echvi_0601at 678.399 kb on - strand, within Echvi_0601at 678.402 kb on + strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.403 kb on - strand, within Echvi_0601at 678.432 kb on + strand, within Echvi_0601at 678.433 kb on - strand, within Echvi_0601at 678.476 kb on + strand, within Echvi_0601at 678.539 kb on + strand, within Echvi_0601at 678.539 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.542 kb on + strand, within Echvi_0601at 678.543 kb on - strand, within Echvi_0601at 678.590 kb on + strand, within Echvi_0601at 678.590 kb on + strand, within Echvi_0601at 678.591 kb on - strand, within Echvi_0601at 679.345 kb on + strand, within Echvi_0602

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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676,809 + Echvi_0600 0.13 -0.3
676,847 - Echvi_0600 0.17 +0.2
676,876 - Echvi_0600 0.20 +0.6
676,949 - Echvi_0600 0.28 -0.7
676,987 + Echvi_0600 0.32 +0.3
676,988 - Echvi_0600 0.32 +0.0
676,993 - Echvi_0600 0.33 +0.2
676,993 - Echvi_0600 0.33 +1.8
676,993 - Echvi_0600 0.33 +0.4
676,993 - Echvi_0600 0.33 +2.5
677,034 + Echvi_0600 0.38 +1.9
677,051 + Echvi_0600 0.39 +0.6
677,215 + Echvi_0600 0.57 -0.1
677,221 - Echvi_0600 0.58 -0.4
677,223 - Echvi_0600 0.58 +1.0
677,269 + Echvi_0600 0.63 -1.4
677,269 + Echvi_0600 0.63 +0.9
677,283 + Echvi_0600 0.65 -0.0
677,366 + Echvi_0600 0.74 +0.8
677,366 + Echvi_0600 0.74 +3.7
677,366 + Echvi_0600 0.74 -0.3
677,367 - Echvi_0600 0.74 +0.1
677,367 - Echvi_0600 0.74 +0.4
677,450 - Echvi_0600 0.83 +1.6
677,454 + Echvi_0600 0.84 +2.1
677,455 - Echvi_0600 0.84 -0.4
677,456 + Echvi_0600 0.84 +0.3
677,456 + Echvi_0600 0.84 -0.5
677,534 + +0.6
677,594 + +1.1
677,614 + -1.3
677,615 - -0.6
677,615 - -0.7
677,616 + +2.6
677,617 - -2.0
677,622 - +0.7
677,770 + -0.8
677,770 + -0.7
677,797 - -0.4
677,806 + -0.8
677,834 + +0.2
677,874 + Echvi_0601 0.12 +1.8
677,960 + Echvi_0601 0.21 -0.5
677,961 - Echvi_0601 0.21 +1.1
677,961 - Echvi_0601 0.21 +0.8
677,961 - Echvi_0601 0.21 +1.0
677,961 - Echvi_0601 0.21 +1.3
677,964 + Echvi_0601 0.22 +0.7
677,994 + Echvi_0601 0.25 -1.6
677,997 + Echvi_0601 0.25 -0.9
678,120 - Echvi_0601 0.38 -0.2
678,120 - Echvi_0601 0.38 +0.6
678,220 + Echvi_0601 0.48 +0.0
678,278 + Echvi_0601 0.54 +0.3
678,278 + Echvi_0601 0.54 +1.6
678,302 + Echvi_0601 0.57 -1.7
678,314 + Echvi_0601 0.58 +0.0
678,315 - Echvi_0601 0.58 -0.4
678,369 + Echvi_0601 0.64 -0.0
678,398 + Echvi_0601 0.67 -0.7
678,399 - Echvi_0601 0.67 +0.9
678,399 - Echvi_0601 0.67 +1.0
678,402 + Echvi_0601 0.67 +0.1
678,403 - Echvi_0601 0.68 -0.2
678,403 - Echvi_0601 0.68 +0.6
678,403 - Echvi_0601 0.68 +2.0
678,403 - Echvi_0601 0.68 -0.2
678,432 + Echvi_0601 0.71 -1.2
678,433 - Echvi_0601 0.71 +0.9
678,476 + Echvi_0601 0.75 -0.6
678,539 + Echvi_0601 0.82 +0.8
678,539 + Echvi_0601 0.82 -0.8
678,542 + Echvi_0601 0.82 -1.0
678,542 + Echvi_0601 0.82 +0.3
678,542 + Echvi_0601 0.82 +0.4
678,543 - Echvi_0601 0.82 +0.1
678,590 + Echvi_0601 0.87 -0.5
678,590 + Echvi_0601 0.87 +2.5
678,591 - Echvi_0601 0.87 +0.4
679,345 + Echvi_0602 0.44 +0.3

Or see this region's nucleotide sequence