Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0571

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0570 and Echvi_0571 overlap by 38 nucleotidesEchvi_0571 and Echvi_0572 are separated by 23 nucleotides Echvi_0570: Echvi_0570 - hypothetical protein, at 648,864 to 650,018 _0570 Echvi_0571: Echvi_0571 - hypothetical protein, at 649,981 to 650,226 _0571 Echvi_0572: Echvi_0572 - hypothetical protein, at 650,250 to 651,383 _0572 Position (kb) 649 650 651Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 649.070 kb on + strand, within Echvi_0570at 649.095 kb on + strand, within Echvi_0570at 649.105 kb on - strand, within Echvi_0570at 649.105 kb on - strand, within Echvi_0570at 649.141 kb on + strand, within Echvi_0570at 649.142 kb on - strand, within Echvi_0570at 649.195 kb on + strand, within Echvi_0570at 649.196 kb on - strand, within Echvi_0570at 649.268 kb on + strand, within Echvi_0570at 649.272 kb on + strand, within Echvi_0570at 649.288 kb on - strand, within Echvi_0570at 649.319 kb on - strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.324 kb on + strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.325 kb on - strand, within Echvi_0570at 649.331 kb on + strand, within Echvi_0570at 649.332 kb on - strand, within Echvi_0570at 649.332 kb on - strand, within Echvi_0570at 649.458 kb on - strand, within Echvi_0570at 649.521 kb on - strand, within Echvi_0570at 649.571 kb on - strand, within Echvi_0570at 649.609 kb on + strand, within Echvi_0570at 649.613 kb on + strand, within Echvi_0570at 649.613 kb on + strand, within Echvi_0570at 649.614 kb on - strand, within Echvi_0570at 649.614 kb on - strand, within Echvi_0570at 649.616 kb on + strand, within Echvi_0570at 649.712 kb on + strand, within Echvi_0570at 649.712 kb on + strand, within Echvi_0570at 649.768 kb on - strand, within Echvi_0570at 649.769 kb on + strand, within Echvi_0570at 649.769 kb on + strand, within Echvi_0570at 649.770 kb on - strand, within Echvi_0570at 649.770 kb on - strand, within Echvi_0570at 649.916 kb on + strandat 649.916 kb on + strandat 649.916 kb on + strandat 649.917 kb on - strandat 649.948 kb on - strandat 650.004 kb on + strandat 650.005 kb on - strandat 650.028 kb on + strand, within Echvi_0571at 650.028 kb on + strand, within Echvi_0571at 650.029 kb on - strand, within Echvi_0571at 650.029 kb on - strand, within Echvi_0571at 650.032 kb on - strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.039 kb on + strand, within Echvi_0571at 650.040 kb on - strand, within Echvi_0571at 650.040 kb on - strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.043 kb on + strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.044 kb on - strand, within Echvi_0571at 650.045 kb on + strand, within Echvi_0571at 650.046 kb on - strand, within Echvi_0571at 650.066 kb on - strand, within Echvi_0571at 650.094 kb on + strand, within Echvi_0571at 650.095 kb on - strand, within Echvi_0571at 650.099 kb on - strand, within Echvi_0571at 650.110 kb on + strand, within Echvi_0571at 650.173 kb on - strand, within Echvi_0571at 650.173 kb on - strand, within Echvi_0571at 650.195 kb on - strand, within Echvi_0571at 650.195 kb on - strand, within Echvi_0571at 650.228 kb on + strandat 650.228 kb on + strandat 650.229 kb on - strandat 650.240 kb on + strandat 650.262 kb on + strandat 650.263 kb on - strandat 650.263 kb on - strandat 650.275 kb on + strandat 650.275 kb on + strandat 650.275 kb on + strandat 650.276 kb on - strandat 650.276 kb on - strandat 650.276 kb on - strandat 650.279 kb on - strandat 650.279 kb on - strandat 650.279 kb on - strandat 650.280 kb on + strandat 650.400 kb on + strand, within Echvi_0572at 650.401 kb on - strand, within Echvi_0572at 650.401 kb on - strand, within Echvi_0572at 650.451 kb on - strand, within Echvi_0572at 650.451 kb on - strand, within Echvi_0572at 650.454 kb on + strand, within Echvi_0572at 650.485 kb on + strand, within Echvi_0572at 650.485 kb on + strand, within Echvi_0572at 650.490 kb on - strand, within Echvi_0572at 650.512 kb on + strand, within Echvi_0572at 650.515 kb on + strand, within Echvi_0572at 650.515 kb on + strand, within Echvi_0572at 650.515 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.520 kb on + strand, within Echvi_0572at 650.521 kb on - strand, within Echvi_0572at 650.521 kb on - strand, within Echvi_0572at 650.521 kb on - strand, within Echvi_0572at 650.553 kb on + strand, within Echvi_0572at 650.554 kb on - strand, within Echvi_0572at 650.554 kb on - strand, within Echvi_0572at 650.578 kb on + strand, within Echvi_0572at 650.578 kb on + strand, within Echvi_0572at 650.579 kb on - strand, within Echvi_0572at 650.579 kb on - strand, within Echvi_0572at 650.579 kb on - strand, within Echvi_0572at 650.586 kb on - strand, within Echvi_0572at 650.671 kb on - strand, within Echvi_0572at 650.671 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.727 kb on - strand, within Echvi_0572at 650.728 kb on + strand, within Echvi_0572at 650.730 kb on + strand, within Echvi_0572at 650.753 kb on + strand, within Echvi_0572at 650.755 kb on + strand, within Echvi_0572at 650.773 kb on + strand, within Echvi_0572at 650.786 kb on + strand, within Echvi_0572at 650.791 kb on + strand, within Echvi_0572at 650.792 kb on - strand, within Echvi_0572at 650.795 kb on + strand, within Echvi_0572at 650.795 kb on + strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.861 kb on - strand, within Echvi_0572at 650.863 kb on + strand, within Echvi_0572at 650.864 kb on - strand, within Echvi_0572at 650.882 kb on + strand, within Echvi_0572at 650.883 kb on - strand, within Echvi_0572at 650.958 kb on - strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.994 kb on + strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.995 kb on - strand, within Echvi_0572at 650.996 kb on + strand, within Echvi_0572at 651.036 kb on - strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.038 kb on + strand, within Echvi_0572at 651.039 kb on - strand, within Echvi_0572at 651.058 kb on + strand, within Echvi_0572at 651.177 kb on - strand, within Echvi_0572

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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649,070 + Echvi_0570 0.18 -0.6
649,095 + Echvi_0570 0.20 -1.2
649,105 - Echvi_0570 0.21 -0.9
649,105 - Echvi_0570 0.21 -0.5
649,141 + Echvi_0570 0.24 -0.7
649,142 - Echvi_0570 0.24 -0.3
649,195 + Echvi_0570 0.29 -3.1
649,196 - Echvi_0570 0.29 -0.8
649,268 + Echvi_0570 0.35 -0.8
649,272 + Echvi_0570 0.35 -1.2
649,288 - Echvi_0570 0.37 +2.1
649,319 - Echvi_0570 0.39 -1.9
649,324 + Echvi_0570 0.40 -2.1
649,324 + Echvi_0570 0.40 -0.9
649,324 + Echvi_0570 0.40 -1.3
649,324 + Echvi_0570 0.40 +0.6
649,324 + Echvi_0570 0.40 -1.2
649,325 - Echvi_0570 0.40 +0.2
649,325 - Echvi_0570 0.40 +1.4
649,325 - Echvi_0570 0.40 -0.4
649,325 - Echvi_0570 0.40 -0.6
649,331 + Echvi_0570 0.40 +0.1
649,332 - Echvi_0570 0.41 +1.7
649,332 - Echvi_0570 0.41 +0.6
649,458 - Echvi_0570 0.51 -0.4
649,521 - Echvi_0570 0.57 -1.7
649,571 - Echvi_0570 0.61 +0.6
649,609 + Echvi_0570 0.65 -1.9
649,613 + Echvi_0570 0.65 +0.8
649,613 + Echvi_0570 0.65 -1.5
649,614 - Echvi_0570 0.65 +0.5
649,614 - Echvi_0570 0.65 -0.2
649,616 + Echvi_0570 0.65 +0.2
649,712 + Echvi_0570 0.73 -0.8
649,712 + Echvi_0570 0.73 +0.3
649,768 - Echvi_0570 0.78 +1.7
649,769 + Echvi_0570 0.78 -1.2
649,769 + Echvi_0570 0.78 +0.3
649,770 - Echvi_0570 0.78 +0.8
649,770 - Echvi_0570 0.78 -0.0
649,916 + +0.6
649,916 + +0.5
649,916 + +0.6
649,917 - +0.8
649,948 - -0.3
650,004 + +0.6
650,005 - -0.5
650,028 + Echvi_0571 0.19 -0.9
650,028 + Echvi_0571 0.19 -0.9
650,029 - Echvi_0571 0.20 -0.8
650,029 - Echvi_0571 0.20 -0.9
650,032 - Echvi_0571 0.21 -1.9
650,039 + Echvi_0571 0.24 -1.3
650,039 + Echvi_0571 0.24 -0.1
650,039 + Echvi_0571 0.24 -0.9
650,039 + Echvi_0571 0.24 +4.1
650,040 - Echvi_0571 0.24 -0.8
650,040 - Echvi_0571 0.24 +0.5
650,043 + Echvi_0571 0.25 -1.7
650,043 + Echvi_0571 0.25 +0.9
650,043 + Echvi_0571 0.25 +0.7
650,043 + Echvi_0571 0.25 -1.6
650,044 - Echvi_0571 0.26 +1.4
650,044 - Echvi_0571 0.26 -2.1
650,044 - Echvi_0571 0.26 +0.3
650,044 - Echvi_0571 0.26 -0.1
650,044 - Echvi_0571 0.26 +0.2
650,045 + Echvi_0571 0.26 -2.3
650,046 - Echvi_0571 0.26 -1.5
650,066 - Echvi_0571 0.35 +0.4
650,094 + Echvi_0571 0.46 -0.7
650,095 - Echvi_0571 0.46 -0.4
650,099 - Echvi_0571 0.48 -0.7
650,110 + Echvi_0571 0.52 +0.4
650,173 - Echvi_0571 0.78 -1.4
650,173 - Echvi_0571 0.78 -0.7
650,195 - Echvi_0571 0.87 +0.1
650,195 - Echvi_0571 0.87 -0.4
650,228 + -1.6
650,228 + +0.6
650,229 - -1.9
650,240 + -0.4
650,262 + -0.9
650,263 - +0.7
650,263 - -0.2
650,275 + -0.0
650,275 + -1.0
650,275 + -0.0
650,276 - +0.1
650,276 - -0.6
650,276 - -0.4
650,279 - +0.1
650,279 - -1.2
650,279 - +0.2
650,280 + +0.9
650,400 + Echvi_0572 0.13 -0.6
650,401 - Echvi_0572 0.13 +1.0
650,401 - Echvi_0572 0.13 -1.2
650,451 - Echvi_0572 0.18 +1.0
650,451 - Echvi_0572 0.18 +1.0
650,454 + Echvi_0572 0.18 +0.0
650,485 + Echvi_0572 0.21 +0.1
650,485 + Echvi_0572 0.21 -1.1
650,490 - Echvi_0572 0.21 -1.2
650,512 + Echvi_0572 0.23 +1.3
650,515 + Echvi_0572 0.23 +0.9
650,515 + Echvi_0572 0.23 -0.3
650,515 + Echvi_0572 0.23 -0.4
650,520 + Echvi_0572 0.24 -2.7
650,520 + Echvi_0572 0.24 +0.6
650,520 + Echvi_0572 0.24 -0.2
650,520 + Echvi_0572 0.24 +1.7
650,520 + Echvi_0572 0.24 -1.2
650,521 - Echvi_0572 0.24 +2.1
650,521 - Echvi_0572 0.24 -1.4
650,521 - Echvi_0572 0.24 -0.3
650,553 + Echvi_0572 0.27 -0.2
650,554 - Echvi_0572 0.27 -0.4
650,554 - Echvi_0572 0.27 -0.1
650,578 + Echvi_0572 0.29 +0.5
650,578 + Echvi_0572 0.29 +0.1
650,579 - Echvi_0572 0.29 -1.4
650,579 - Echvi_0572 0.29 +0.6
650,579 - Echvi_0572 0.29 +0.3
650,586 - Echvi_0572 0.30 -0.4
650,671 - Echvi_0572 0.37 +0.7
650,671 - Echvi_0572 0.37 -0.2
650,727 - Echvi_0572 0.42 -1.0
650,727 - Echvi_0572 0.42 +0.2
650,727 - Echvi_0572 0.42 +0.4
650,728 + Echvi_0572 0.42 +1.1
650,730 + Echvi_0572 0.42 +0.1
650,753 + Echvi_0572 0.44 -0.1
650,755 + Echvi_0572 0.45 +0.6
650,773 + Echvi_0572 0.46 +0.1
650,786 + Echvi_0572 0.47 +0.1
650,791 + Echvi_0572 0.48 -1.0
650,792 - Echvi_0572 0.48 -1.7
650,795 + Echvi_0572 0.48 -0.9
650,795 + Echvi_0572 0.48 +0.4
650,861 - Echvi_0572 0.54 -1.3
650,861 - Echvi_0572 0.54 -0.0
650,861 - Echvi_0572 0.54 -0.2
650,863 + Echvi_0572 0.54 +0.6
650,864 - Echvi_0572 0.54 -1.2
650,882 + Echvi_0572 0.56 +0.1
650,883 - Echvi_0572 0.56 +0.4
650,958 - Echvi_0572 0.62 +1.3
650,994 + Echvi_0572 0.66 -0.7
650,994 + Echvi_0572 0.66 -0.7
650,994 + Echvi_0572 0.66 -1.0
650,994 + Echvi_0572 0.66 -0.1
650,994 + Echvi_0572 0.66 +2.9
650,994 + Echvi_0572 0.66 -0.3
650,995 - Echvi_0572 0.66 -0.3
650,995 - Echvi_0572 0.66 +1.1
650,995 - Echvi_0572 0.66 -1.3
650,995 - Echvi_0572 0.66 -1.3
650,996 + Echvi_0572 0.66 -1.7
651,036 - Echvi_0572 0.69 -0.7
651,038 + Echvi_0572 0.69 -1.9
651,038 + Echvi_0572 0.69 -1.5
651,038 + Echvi_0572 0.69 -0.4
651,039 - Echvi_0572 0.70 -1.6
651,058 + Echvi_0572 0.71 +0.4
651,177 - Echvi_0572 0.82 -1.1

Or see this region's nucleotide sequence