Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0560

Experiment: m.b. Carbenicillin 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0559 and Echvi_0560 are separated by 154 nucleotidesEchvi_0560 and Echvi_0561 are separated by 145 nucleotides Echvi_0559: Echvi_0559 - hypothetical protein, at 631,967 to 633,889 _0559 Echvi_0560: Echvi_0560 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 634,044 to 634,712 _0560 Echvi_0561: Echvi_0561 - Sugar kinases, ribokinase family, at 634,858 to 635,865 _0561 Position (kb) 634 635Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 633.055 kb on + strand, within Echvi_0559at 633.066 kb on + strand, within Echvi_0559at 633.069 kb on + strand, within Echvi_0559at 633.069 kb on + strand, within Echvi_0559at 633.069 kb on + strand, within Echvi_0559at 633.069 kb on + strand, within Echvi_0559at 633.070 kb on - strand, within Echvi_0559at 633.088 kb on + strand, within Echvi_0559at 633.089 kb on - strand, within Echvi_0559at 633.111 kb on + strand, within Echvi_0559at 633.112 kb on - strand, within Echvi_0559at 633.146 kb on + strand, within Echvi_0559at 633.147 kb on - strand, within Echvi_0559at 633.147 kb on - strand, within Echvi_0559at 633.147 kb on - strand, within Echvi_0559at 633.147 kb on - strand, within Echvi_0559at 633.149 kb on + strand, within Echvi_0559at 633.149 kb on + strand, within Echvi_0559at 633.149 kb on + strand, within Echvi_0559at 633.150 kb on - strand, within Echvi_0559at 633.150 kb on - strand, within Echvi_0559at 633.150 kb on - strand, within Echvi_0559at 633.154 kb on + strand, within Echvi_0559at 633.154 kb on + strand, within Echvi_0559at 633.154 kb on + strand, within Echvi_0559at 633.155 kb on - strand, within Echvi_0559at 633.155 kb on - strand, within Echvi_0559at 633.155 kb on - strand, within Echvi_0559at 633.155 kb on - strand, within Echvi_0559at 633.182 kb on + strand, within Echvi_0559at 633.182 kb on + strand, within Echvi_0559at 633.185 kb on - strand, within Echvi_0559at 633.247 kb on - strand, within Echvi_0559at 633.277 kb on - strand, within Echvi_0559at 633.315 kb on - strand, within Echvi_0559at 633.414 kb on - strand, within Echvi_0559at 633.424 kb on - strand, within Echvi_0559at 633.431 kb on - strand, within Echvi_0559at 633.431 kb on - strand, within Echvi_0559at 633.432 kb on + strand, within Echvi_0559at 633.432 kb on + strand, within Echvi_0559at 633.433 kb on - strand, within Echvi_0559at 633.442 kb on - strand, within Echvi_0559at 633.454 kb on + strand, within Echvi_0559at 633.570 kb on + strand, within Echvi_0559at 633.570 kb on + strand, within Echvi_0559at 633.596 kb on - strand, within Echvi_0559at 633.600 kb on + strand, within Echvi_0559at 633.600 kb on + strand, within Echvi_0559at 633.601 kb on - strand, within Echvi_0559at 633.711 kb on + strandat 633.712 kb on - strandat 633.712 kb on - strandat 633.712 kb on - strandat 633.787 kb on - strandat 633.825 kb on + strandat 633.831 kb on + strandat 633.831 kb on + strandat 633.832 kb on - strandat 633.834 kb on - strandat 633.904 kb on + strandat 633.904 kb on + strandat 633.904 kb on + strandat 633.904 kb on + strandat 633.920 kb on - strandat 633.933 kb on + strandat 633.933 kb on + strandat 633.933 kb on + strandat 633.933 kb on + strandat 634.003 kb on - strandat 634.003 kb on - strandat 634.014 kb on + strandat 634.018 kb on + strandat 634.018 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.023 kb on + strandat 634.024 kb on - strandat 634.025 kb on + strandat 634.025 kb on + strandat 634.026 kb on - strandat 634.069 kb on + strandat 634.069 kb on + strandat 634.069 kb on + strandat 634.163 kb on + strand, within Echvi_0560at 634.164 kb on - strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.260 kb on + strand, within Echvi_0560at 634.261 kb on - strand, within Echvi_0560at 634.261 kb on - strand, within Echvi_0560at 634.261 kb on - strand, within Echvi_0560at 634.262 kb on + strand, within Echvi_0560at 634.262 kb on + strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.263 kb on - strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.266 kb on + strand, within Echvi_0560at 634.267 kb on - strand, within Echvi_0560at 634.267 kb on - strand, within Echvi_0560at 634.267 kb on - strand, within Echvi_0560at 634.269 kb on + strand, within Echvi_0560at 634.270 kb on - strand, within Echvi_0560at 634.270 kb on - strand, within Echvi_0560at 634.293 kb on + strand, within Echvi_0560at 634.293 kb on + strand, within Echvi_0560at 634.293 kb on + strand, within Echvi_0560at 634.294 kb on - strand, within Echvi_0560at 634.294 kb on - strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.351 kb on + strand, within Echvi_0560at 634.352 kb on - strand, within Echvi_0560at 634.352 kb on - strand, within Echvi_0560at 634.352 kb on - strand, within Echvi_0560at 634.358 kb on + strand, within Echvi_0560at 634.359 kb on - strand, within Echvi_0560at 634.359 kb on - strand, within Echvi_0560at 634.359 kb on - strand, within Echvi_0560at 634.362 kb on + strand, within Echvi_0560at 634.362 kb on + strand, within Echvi_0560at 634.362 kb on + strand, within Echvi_0560at 634.363 kb on - strand, within Echvi_0560at 634.363 kb on - strand, within Echvi_0560at 634.450 kb on - strand, within Echvi_0560at 634.463 kb on - strand, within Echvi_0560at 634.466 kb on - strand, within Echvi_0560at 634.585 kb on + strand, within Echvi_0560at 634.601 kb on + strand, within Echvi_0560at 634.708 kb on - strandat 634.711 kb on - strandat 634.741 kb on - strandat 634.752 kb on + strandat 634.752 kb on + strandat 634.753 kb on - strandat 634.765 kb on - strandat 634.799 kb on + strandat 634.807 kb on + strandat 634.808 kb on - strandat 634.809 kb on + strandat 634.809 kb on + strandat 634.810 kb on - strandat 634.832 kb on + strandat 634.832 kb on + strandat 634.995 kb on + strand, within Echvi_0561at 635.073 kb on + strand, within Echvi_0561at 635.265 kb on + strandat 635.275 kb on + strand, within Echvi_0561at 635.275 kb on + strand, within Echvi_0561at 635.276 kb on - strandat 635.389 kb on + strand, within Echvi_0561at 635.389 kb on + strand, within Echvi_0561at 635.389 kb on + strand, within Echvi_0561at 635.391 kb on + strand, within Echvi_0561at 635.393 kb on + strand, within Echvi_0561at 635.400 kb on - strand, within Echvi_0561at 635.521 kb on - strand, within Echvi_0561at 635.524 kb on - strand, within Echvi_0561at 635.627 kb on + strand, within Echvi_0561at 635.630 kb on + strand, within Echvi_0561

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
remove
633,055 + Echvi_0559 0.57 -1.3
633,066 + Echvi_0559 0.57 -0.3
633,069 + Echvi_0559 0.57 +0.6
633,069 + Echvi_0559 0.57 +1.3
633,069 + Echvi_0559 0.57 -0.9
633,069 + Echvi_0559 0.57 -0.2
633,070 - Echvi_0559 0.57 +1.2
633,088 + Echvi_0559 0.58 +0.2
633,089 - Echvi_0559 0.58 -2.2
633,111 + Echvi_0559 0.59 +1.6
633,112 - Echvi_0559 0.60 -0.3
633,146 + Echvi_0559 0.61 -1.4
633,147 - Echvi_0559 0.61 +0.5
633,147 - Echvi_0559 0.61 +0.2
633,147 - Echvi_0559 0.61 +0.3
633,147 - Echvi_0559 0.61 -0.4
633,149 + Echvi_0559 0.61 +0.2
633,149 + Echvi_0559 0.61 +1.7
633,149 + Echvi_0559 0.61 +0.3
633,150 - Echvi_0559 0.62 +0.2
633,150 - Echvi_0559 0.62 +0.7
633,150 - Echvi_0559 0.62 -0.3
633,154 + Echvi_0559 0.62 +0.2
633,154 + Echvi_0559 0.62 +0.6
633,154 + Echvi_0559 0.62 -0.6
633,155 - Echvi_0559 0.62 -0.4
633,155 - Echvi_0559 0.62 +0.6
633,155 - Echvi_0559 0.62 -0.5
633,155 - Echvi_0559 0.62 -0.9
633,182 + Echvi_0559 0.63 -0.2
633,182 + Echvi_0559 0.63 -0.4
633,185 - Echvi_0559 0.63 +0.2
633,247 - Echvi_0559 0.67 -0.6
633,277 - Echvi_0559 0.68 -0.3
633,315 - Echvi_0559 0.70 -0.2
633,414 - Echvi_0559 0.75 -1.0
633,424 - Echvi_0559 0.76 +0.4
633,431 - Echvi_0559 0.76 -0.2
633,431 - Echvi_0559 0.76 -1.0
633,432 + Echvi_0559 0.76 +0.3
633,432 + Echvi_0559 0.76 +0.4
633,433 - Echvi_0559 0.76 -0.0
633,442 - Echvi_0559 0.77 -2.2
633,454 + Echvi_0559 0.77 -1.3
633,570 + Echvi_0559 0.83 -0.3
633,570 + Echvi_0559 0.83 -1.9
633,596 - Echvi_0559 0.85 -0.3
633,600 + Echvi_0559 0.85 +1.1
633,600 + Echvi_0559 0.85 +1.3
633,601 - Echvi_0559 0.85 +0.3
633,711 + -2.3
633,712 - -0.0
633,712 - +0.2
633,712 - -0.6
633,787 - -0.8
633,825 + -0.0
633,831 + -0.6
633,831 + -0.3
633,832 - +0.2
633,834 - -1.1
633,904 + +0.7
633,904 + +0.6
633,904 + -0.2
633,904 + +0.3
633,920 - -0.2
633,933 + +0.4
633,933 + -1.1
633,933 + -0.7
633,933 + -1.4
634,003 - -0.1
634,003 - +0.8
634,014 + -0.9
634,018 + -1.3
634,018 + +0.3
634,023 + -0.3
634,023 + +1.2
634,023 + -0.2
634,023 + +1.0
634,023 + -0.4
634,024 - -0.7
634,025 + -1.2
634,025 + +0.2
634,026 - -1.3
634,069 + +0.1
634,069 + +0.2
634,069 + -0.4
634,163 + Echvi_0560 0.18 +0.3
634,164 - Echvi_0560 0.18 -1.8
634,260 + Echvi_0560 0.32 -0.8
634,260 + Echvi_0560 0.32 +0.8
634,260 + Echvi_0560 0.32 -1.0
634,260 + Echvi_0560 0.32 -1.4
634,261 - Echvi_0560 0.32 -1.4
634,261 - Echvi_0560 0.32 -0.3
634,261 - Echvi_0560 0.32 +0.2
634,262 + Echvi_0560 0.33 +1.2
634,262 + Echvi_0560 0.33 +0.2
634,263 - Echvi_0560 0.33 +0.8
634,263 - Echvi_0560 0.33 +1.4
634,263 - Echvi_0560 0.33 +0.2
634,263 - Echvi_0560 0.33 -0.0
634,266 + Echvi_0560 0.33 -1.1
634,266 + Echvi_0560 0.33 -0.1
634,266 + Echvi_0560 0.33 -0.5
634,266 + Echvi_0560 0.33 +0.2
634,266 + Echvi_0560 0.33 +0.1
634,266 + Echvi_0560 0.33 +0.2
634,267 - Echvi_0560 0.33 -0.7
634,267 - Echvi_0560 0.33 +1.2
634,267 - Echvi_0560 0.33 -0.2
634,269 + Echvi_0560 0.34 +0.8
634,270 - Echvi_0560 0.34 -0.3
634,270 - Echvi_0560 0.34 +1.3
634,293 + Echvi_0560 0.37 +0.1
634,293 + Echvi_0560 0.37 +2.2
634,293 + Echvi_0560 0.37 +0.6
634,294 - Echvi_0560 0.37 -0.3
634,294 - Echvi_0560 0.37 -0.4
634,351 + Echvi_0560 0.46 +1.5
634,351 + Echvi_0560 0.46 -0.1
634,351 + Echvi_0560 0.46 +0.2
634,351 + Echvi_0560 0.46 +0.3
634,352 - Echvi_0560 0.46 -0.3
634,352 - Echvi_0560 0.46 +0.7
634,352 - Echvi_0560 0.46 +0.3
634,358 + Echvi_0560 0.47 +2.2
634,359 - Echvi_0560 0.47 +0.0
634,359 - Echvi_0560 0.47 -0.9
634,359 - Echvi_0560 0.47 +1.7
634,362 + Echvi_0560 0.48 -0.4
634,362 + Echvi_0560 0.48 -0.1
634,362 + Echvi_0560 0.48 +0.4
634,363 - Echvi_0560 0.48 +0.3
634,363 - Echvi_0560 0.48 +1.1
634,450 - Echvi_0560 0.61 -0.1
634,463 - Echvi_0560 0.63 +0.7
634,466 - Echvi_0560 0.63 -0.4
634,585 + Echvi_0560 0.81 +2.2
634,601 + Echvi_0560 0.83 -0.3
634,708 - -0.4
634,711 - -0.5
634,741 - -0.3
634,752 + -1.2
634,752 + +2.2
634,753 - -0.7
634,765 - +0.0
634,799 + -0.8
634,807 + +1.6
634,808 - +0.6
634,809 + +1.2
634,809 + +0.8
634,810 - -0.8
634,832 + -0.7
634,832 + -2.1
634,995 + Echvi_0561 0.14 +2.0
635,073 + Echvi_0561 0.21 +2.8
635,265 + +2.2
635,275 + Echvi_0561 0.41 +0.8
635,275 + Echvi_0561 0.41 +2.2
635,276 - +4.2
635,389 + Echvi_0561 0.53 +0.6
635,389 + Echvi_0561 0.53 -0.5
635,389 + Echvi_0561 0.53 +0.7
635,391 + Echvi_0561 0.53 +0.5
635,393 + Echvi_0561 0.53 +1.6
635,400 - Echvi_0561 0.54 +2.2
635,521 - Echvi_0561 0.66 +2.2
635,524 - Echvi_0561 0.66 +1.6
635,627 + Echvi_0561 0.76 +0.7
635,630 + Echvi_0561 0.77 +0.6

Or see this region's nucleotide sequence