Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0555 and Echvi_0556 are separated by 242 nucleotides Echvi_0556 and Echvi_0557 are separated by 263 nucleotides Echvi_0557 and Echvi_0558 are separated by 208 nucleotides
Echvi_0555: Echvi_0555 - Small-conductance mechanosensitive channel, at 624,954 to 627,503
_0555
Echvi_0556: Echvi_0556 - Alpha-L-fucosidase, at 627,746 to 629,080
_0556
Echvi_0557: Echvi_0557 - Molecular chaperone (small heat shock protein), at 629,344 to 629,772
_0557
Echvi_0558: Echvi_0558 - periplasmic serine protease, Do/DeqQ family, at 629,981 to 631,468
_0558
Position (kb) 627
628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 626.766 kb on - strand, within Echvi_0555 at 626.775 kb on + strand, within Echvi_0555 at 626.775 kb on + strand, within Echvi_0555 at 626.775 kb on + strand, within Echvi_0555 at 626.776 kb on - strand, within Echvi_0555 at 626.776 kb on - strand, within Echvi_0555 at 626.776 kb on - strand, within Echvi_0555 at 626.777 kb on + strand, within Echvi_0555 at 626.777 kb on + strand, within Echvi_0555 at 626.777 kb on + strand, within Echvi_0555 at 626.778 kb on - strand, within Echvi_0555 at 626.778 kb on - strand, within Echvi_0555 at 626.778 kb on - strand, within Echvi_0555 at 626.779 kb on + strand, within Echvi_0555 at 626.779 kb on + strand, within Echvi_0555 at 626.779 kb on + strand, within Echvi_0555 at 626.780 kb on - strand, within Echvi_0555 at 626.780 kb on - strand, within Echvi_0555 at 626.784 kb on - strand, within Echvi_0555 at 626.853 kb on + strand, within Echvi_0555 at 626.887 kb on + strand, within Echvi_0555 at 626.917 kb on + strand, within Echvi_0555 at 626.917 kb on + strand, within Echvi_0555 at 626.918 kb on - strand, within Echvi_0555 at 626.919 kb on + strand, within Echvi_0555 at 626.936 kb on + strand, within Echvi_0555 at 627.006 kb on + strand, within Echvi_0555 at 627.012 kb on + strand, within Echvi_0555 at 627.013 kb on - strand, within Echvi_0555 at 627.013 kb on - strand, within Echvi_0555 at 627.013 kb on - strand, within Echvi_0555 at 627.018 kb on - strand, within Echvi_0555 at 627.018 kb on - strand, within Echvi_0555 at 627.026 kb on + strand, within Echvi_0555 at 627.072 kb on - strand, within Echvi_0555 at 627.100 kb on - strand, within Echvi_0555 at 627.116 kb on - strand, within Echvi_0555 at 627.128 kb on + strand, within Echvi_0555 at 627.132 kb on + strand, within Echvi_0555 at 627.132 kb on + strand, within Echvi_0555 at 627.200 kb on + strand, within Echvi_0555 at 627.219 kb on + strand, within Echvi_0555 at 627.220 kb on - strand, within Echvi_0555 at 627.220 kb on - strand, within Echvi_0555 at 627.231 kb on - strand, within Echvi_0555 at 627.278 kb on + strand at 627.281 kb on + strand at 627.281 kb on + strand at 627.282 kb on - strand at 627.282 kb on - strand at 627.285 kb on + strand at 627.285 kb on + strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.293 kb on - strand at 627.321 kb on - strand at 627.344 kb on + strand at 627.345 kb on - strand at 627.401 kb on + strand at 627.408 kb on + strand at 627.454 kb on - strand at 627.517 kb on + strand at 627.527 kb on + strand at 627.687 kb on + strand at 627.740 kb on + strand at 627.740 kb on + strand at 627.745 kb on + strand at 627.745 kb on + strand at 627.783 kb on + strand at 627.891 kb on - strand, within Echvi_0556 at 627.936 kb on - strand, within Echvi_0556 at 627.944 kb on + strand, within Echvi_0556 at 627.945 kb on - strand, within Echvi_0556 at 627.945 kb on - strand, within Echvi_0556 at 627.945 kb on - strand, within Echvi_0556 at 627.953 kb on + strand, within Echvi_0556 at 627.953 kb on + strand, within Echvi_0556 at 627.953 kb on + strand, within Echvi_0556 at 627.954 kb on - strand, within Echvi_0556 at 627.955 kb on + strand, within Echvi_0556 at 627.955 kb on + strand, within Echvi_0556 at 627.989 kb on + strand, within Echvi_0556 at 627.989 kb on + strand, within Echvi_0556 at 627.990 kb on - strand, within Echvi_0556 at 627.990 kb on - strand, within Echvi_0556 at 627.990 kb on - strand, within Echvi_0556 at 628.190 kb on + strand, within Echvi_0556 at 628.190 kb on + strand, within Echvi_0556 at 628.190 kb on + strand, within Echvi_0556 at 628.191 kb on - strand, within Echvi_0556 at 628.224 kb on - strand, within Echvi_0556 at 628.400 kb on - strand, within Echvi_0556 at 628.517 kb on + strand, within Echvi_0556 at 628.578 kb on - strand, within Echvi_0556 at 628.600 kb on - strand, within Echvi_0556 at 628.606 kb on - strand, within Echvi_0556 at 628.698 kb on + strand, within Echvi_0556 at 628.699 kb on - strand, within Echvi_0556 at 628.699 kb on - strand, within Echvi_0556 at 628.742 kb on + strand, within Echvi_0556 at 628.743 kb on - strand, within Echvi_0556 at 628.743 kb on - strand, within Echvi_0556 at 628.743 kb on - strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.819 kb on + strand, within Echvi_0556 at 628.820 kb on - strand, within Echvi_0556 at 628.820 kb on - strand, within Echvi_0556 at 628.820 kb on - strand, within Echvi_0556 at 628.820 kb on - strand, within Echvi_0556 at 628.820 kb on - strand, within Echvi_0556 at 628.833 kb on - strand, within Echvi_0556 at 628.839 kb on + strand, within Echvi_0556 at 628.897 kb on - strand, within Echvi_0556 at 628.967 kb on + strand at 628.967 kb on + strand at 628.991 kb on + strand at 629.088 kb on - strand at 629.099 kb on + strand at 629.172 kb on - strand at 629.172 kb on - strand at 629.292 kb on - strand at 629.340 kb on + strand at 629.340 kb on + strand at 629.343 kb on + strand at 629.344 kb on - strand at 629.344 kb on - strand at 629.359 kb on + strand at 629.359 kb on + strand at 629.359 kb on + strand at 629.360 kb on - strand at 629.388 kb on + strand, within Echvi_0557 at 629.388 kb on + strand, within Echvi_0557 at 629.388 kb on + strand, within Echvi_0557 at 629.488 kb on + strand, within Echvi_0557 at 629.488 kb on + strand, within Echvi_0557 at 629.546 kb on + strand, within Echvi_0557 at 629.546 kb on + strand, within Echvi_0557 at 629.546 kb on + strand, within Echvi_0557 at 629.547 kb on - strand, within Echvi_0557 at 629.547 kb on - strand, within Echvi_0557 at 629.553 kb on + strand, within Echvi_0557 at 629.727 kb on + strand, within Echvi_0557 at 629.727 kb on + strand, within Echvi_0557 at 629.728 kb on - strand, within Echvi_0557 at 629.728 kb on - strand, within Echvi_0557 at 629.728 kb on - strand, within Echvi_0557 at 629.728 kb on - strand, within Echvi_0557 at 629.770 kb on + strand at 629.778 kb on - strand at 629.881 kb on - strand at 629.894 kb on + strand at 629.937 kb on - strand at 630.027 kb on + strand at 630.028 kb on - strand at 630.028 kb on - strand at 630.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 626,766 - Echvi_0555 0.71 -0.9 626,775 + Echvi_0555 0.71 -1.3 626,775 + Echvi_0555 0.71 -0.1 626,775 + Echvi_0555 0.71 -0.1 626,776 - Echvi_0555 0.71 +0.0 626,776 - Echvi_0555 0.71 +1.5 626,776 - Echvi_0555 0.71 +0.6 626,777 + Echvi_0555 0.71 -0.6 626,777 + Echvi_0555 0.71 +0.2 626,777 + Echvi_0555 0.71 -0.7 626,778 - Echvi_0555 0.72 -0.9 626,778 - Echvi_0555 0.72 +0.0 626,778 - Echvi_0555 0.72 -0.2 626,779 + Echvi_0555 0.72 -1.4 626,779 + Echvi_0555 0.72 +0.2 626,779 + Echvi_0555 0.72 +1.0 626,780 - Echvi_0555 0.72 +0.4 626,780 - Echvi_0555 0.72 +0.7 626,784 - Echvi_0555 0.72 +0.6 626,853 + Echvi_0555 0.74 -2.6 626,887 + Echvi_0555 0.76 -1.1 626,917 + Echvi_0555 0.77 -0.5 626,917 + Echvi_0555 0.77 +2.2 626,918 - Echvi_0555 0.77 -0.3 626,919 + Echvi_0555 0.77 -1.1 626,936 + Echvi_0555 0.78 -1.2 627,006 + Echvi_0555 0.80 -0.1 627,012 + Echvi_0555 0.81 +0.5 627,013 - Echvi_0555 0.81 +1.2 627,013 - Echvi_0555 0.81 +0.4 627,013 - Echvi_0555 0.81 -0.4 627,018 - Echvi_0555 0.81 +0.0 627,018 - Echvi_0555 0.81 +1.0 627,026 + Echvi_0555 0.81 +0.5 627,072 - Echvi_0555 0.83 +1.4 627,100 - Echvi_0555 0.84 +0.1 627,116 - Echvi_0555 0.85 +0.2 627,128 + Echvi_0555 0.85 +0.0 627,132 + Echvi_0555 0.85 -0.8 627,132 + Echvi_0555 0.85 -0.7 627,200 + Echvi_0555 0.88 -0.4 627,219 + Echvi_0555 0.89 +0.2 627,220 - Echvi_0555 0.89 +0.6 627,220 - Echvi_0555 0.89 -0.7 627,231 - Echvi_0555 0.89 +0.3 627,278 + +0.2 627,281 + -0.3 627,281 + +0.1 627,282 - -0.4 627,282 - -0.6 627,285 + +0.4 627,285 + -0.1 627,286 - -2.5 627,286 - +0.8 627,293 - -0.4 627,321 - +0.3 627,344 + -1.1 627,345 - -1.2 627,401 + -3.4 627,408 + -0.2 627,454 - -0.0 627,517 + -2.8 627,527 + -0.3 627,687 + +0.4 627,740 + +0.0 627,740 + +0.8 627,745 + -0.5 627,745 + -1.6 627,783 + +0.3 627,891 - Echvi_0556 0.11 -1.3 627,936 - Echvi_0556 0.14 +0.6 627,944 + Echvi_0556 0.15 +0.4 627,945 - Echvi_0556 0.15 +0.2 627,945 - Echvi_0556 0.15 -1.8 627,945 - Echvi_0556 0.15 -0.5 627,953 + Echvi_0556 0.16 +1.2 627,953 + Echvi_0556 0.16 +0.5 627,953 + Echvi_0556 0.16 +1.3 627,954 - Echvi_0556 0.16 -0.2 627,955 + Echvi_0556 0.16 +0.3 627,955 + Echvi_0556 0.16 +3.0 627,989 + Echvi_0556 0.18 -0.1 627,989 + Echvi_0556 0.18 +0.5 627,990 - Echvi_0556 0.18 +1.0 627,990 - Echvi_0556 0.18 -0.3 627,990 - Echvi_0556 0.18 -0.3 628,190 + Echvi_0556 0.33 -1.0 628,190 + Echvi_0556 0.33 +0.1 628,190 + Echvi_0556 0.33 +0.6 628,191 - Echvi_0556 0.33 +0.9 628,224 - Echvi_0556 0.36 -0.0 628,400 - Echvi_0556 0.49 +0.6 628,517 + Echvi_0556 0.58 +0.2 628,578 - Echvi_0556 0.62 -0.3 628,600 - Echvi_0556 0.64 +1.5 628,606 - Echvi_0556 0.64 +0.7 628,698 + Echvi_0556 0.71 +0.1 628,699 - Echvi_0556 0.71 -0.6 628,699 - Echvi_0556 0.71 -2.2 628,742 + Echvi_0556 0.75 +2.2 628,743 - Echvi_0556 0.75 +0.2 628,743 - Echvi_0556 0.75 +1.8 628,743 - Echvi_0556 0.75 -0.6 628,819 + Echvi_0556 0.80 -0.5 628,819 + Echvi_0556 0.80 +1.0 628,819 + Echvi_0556 0.80 -0.6 628,819 + Echvi_0556 0.80 +0.5 628,819 + Echvi_0556 0.80 -1.6 628,819 + Echvi_0556 0.80 -1.5 628,819 + Echvi_0556 0.80 -0.1 628,820 - Echvi_0556 0.80 +1.3 628,820 - Echvi_0556 0.80 +1.1 628,820 - Echvi_0556 0.80 -0.2 628,820 - Echvi_0556 0.80 -0.0 628,820 - Echvi_0556 0.80 +0.2 628,833 - Echvi_0556 0.81 +0.8 628,839 + Echvi_0556 0.82 -0.4 628,897 - Echvi_0556 0.86 +0.1 628,967 + +1.2 628,967 + -0.4 628,991 + +0.2 629,088 - +0.2 629,099 + +0.3 629,172 - +0.0 629,172 - -1.6 629,292 - -0.3 629,340 + -2.2 629,340 + -0.6 629,343 + +0.1 629,344 - +0.9 629,344 - +0.7 629,359 + -1.3 629,359 + +1.0 629,359 + +0.5 629,360 - -0.2 629,388 + Echvi_0557 0.10 +0.4 629,388 + Echvi_0557 0.10 -0.1 629,388 + Echvi_0557 0.10 +0.3 629,488 + Echvi_0557 0.34 -0.1 629,488 + Echvi_0557 0.34 +0.3 629,546 + Echvi_0557 0.47 -0.9 629,546 + Echvi_0557 0.47 -0.4 629,546 + Echvi_0557 0.47 -1.3 629,547 - Echvi_0557 0.47 -1.0 629,547 - Echvi_0557 0.47 -0.4 629,553 + Echvi_0557 0.49 +0.3 629,727 + Echvi_0557 0.89 -1.0 629,727 + Echvi_0557 0.89 -1.1 629,728 - Echvi_0557 0.90 +1.1 629,728 - Echvi_0557 0.90 -1.5 629,728 - Echvi_0557 0.90 -0.6 629,728 - Echvi_0557 0.90 -0.6 629,770 + -1.0 629,778 - +0.0 629,881 - +0.0 629,894 + +0.7 629,937 - -2.9 630,027 + -0.3 630,028 - -1.6 630,028 - -0.3 630,055 - -0.8
Or see this region's nucleotide sequence