Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0493 and Echvi_0494 are separated by 250 nucleotides Echvi_0494 and Echvi_0495 are separated by 72 nucleotides
Echvi_0493: Echvi_0493 - TonB-linked outer membrane protein, SusC/RagA family, at 546,862 to 549,831
_0493
Echvi_0494: Echvi_0494 - hypothetical protein, at 550,082 to 551,230
_0494
Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301
_0495
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 549.083 kb on + strand, within Echvi_0493 at 549.083 kb on + strand, within Echvi_0493 at 549.174 kb on - strand, within Echvi_0493 at 549.254 kb on + strand, within Echvi_0493 at 549.254 kb on + strand, within Echvi_0493 at 549.333 kb on + strand, within Echvi_0493 at 549.333 kb on + strand, within Echvi_0493 at 549.367 kb on - strand, within Echvi_0493 at 549.448 kb on + strand, within Echvi_0493 at 549.490 kb on + strand, within Echvi_0493 at 549.490 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.499 kb on + strand, within Echvi_0493 at 549.529 kb on - strand, within Echvi_0493 at 549.573 kb on + strand at 549.627 kb on + strand at 549.627 kb on + strand at 549.782 kb on - strand at 549.790 kb on + strand at 549.818 kb on - strand at 549.845 kb on + strand at 549.859 kb on + strand at 549.872 kb on + strand at 549.872 kb on + strand at 550.034 kb on - strand at 550.039 kb on + strand at 550.065 kb on - strand at 550.129 kb on + strand at 550.130 kb on - strand at 550.236 kb on - strand at 550.247 kb on + strand, within Echvi_0494 at 550.290 kb on - strand, within Echvi_0494 at 550.458 kb on + strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.499 kb on + strand, within Echvi_0494 at 550.501 kb on + strand, within Echvi_0494 at 550.502 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.616 kb on + strand, within Echvi_0494 at 550.617 kb on - strand, within Echvi_0494 at 550.631 kb on - strand, within Echvi_0494 at 550.641 kb on - strand, within Echvi_0494 at 550.650 kb on - strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.654 kb on - strand, within Echvi_0494 at 550.703 kb on + strand, within Echvi_0494 at 550.744 kb on + strand, within Echvi_0494 at 550.745 kb on - strand, within Echvi_0494 at 550.810 kb on + strand, within Echvi_0494 at 550.832 kb on + strand at 550.833 kb on - strand, within Echvi_0494 at 550.865 kb on - strand, within Echvi_0494 at 550.876 kb on + strand, within Echvi_0494 at 550.983 kb on + strand, within Echvi_0494 at 550.986 kb on - strand, within Echvi_0494 at 550.986 kb on - strand, within Echvi_0494 at 551.074 kb on + strand, within Echvi_0494 at 551.150 kb on - strand at 551.215 kb on + strand at 551.216 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.256 kb on + strand at 551.256 kb on + strand at 551.256 kb on + strand at 551.259 kb on - strand at 551.259 kb on - strand at 551.302 kb on - strand at 551.304 kb on + strand at 551.308 kb on + strand at 551.308 kb on + strand at 551.309 kb on - strand at 551.318 kb on + strand at 551.319 kb on - strand at 551.362 kb on + strand at 551.541 kb on + strand, within Echvi_0495 at 551.541 kb on + strand, within Echvi_0495 at 551.684 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.688 kb on - strand, within Echvi_0495 at 551.785 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.982 kb on + strand, within Echvi_0495 at 551.983 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.995 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.998 kb on - strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.164 kb on + strand, within Echvi_0495 at 552.166 kb on + strand, within Echvi_0495 at 552.167 kb on - strand, within Echvi_0495
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 549,083 + Echvi_0493 0.75 -0.5 549,083 + Echvi_0493 0.75 +0.2 549,174 - Echvi_0493 0.78 -0.7 549,254 + Echvi_0493 0.81 -0.4 549,254 + Echvi_0493 0.81 -2.2 549,333 + Echvi_0493 0.83 +0.3 549,333 + Echvi_0493 0.83 +0.1 549,367 - Echvi_0493 0.84 +0.7 549,448 + Echvi_0493 0.87 -1.1 549,490 + Echvi_0493 0.88 +0.7 549,490 + Echvi_0493 0.88 -0.4 549,493 + Echvi_0493 0.89 -0.7 549,493 + Echvi_0493 0.89 -0.3 549,493 + Echvi_0493 0.89 +0.5 549,494 - Echvi_0493 0.89 +0.6 549,494 - Echvi_0493 0.89 +0.2 549,494 - Echvi_0493 0.89 -0.9 549,499 + Echvi_0493 0.89 +1.4 549,529 - Echvi_0493 0.90 -0.2 549,573 + -0.0 549,627 + +0.9 549,627 + +0.1 549,782 - +0.4 549,790 + -0.6 549,818 - -0.2 549,845 + -0.9 549,859 + +0.2 549,872 + -0.2 549,872 + +1.6 550,034 - -1.0 550,039 + -0.7 550,065 - -1.0 550,129 + +0.1 550,130 - -0.7 550,236 - +0.8 550,247 + Echvi_0494 0.14 -0.4 550,290 - Echvi_0494 0.18 -0.7 550,458 + Echvi_0494 0.33 +2.9 550,459 - Echvi_0494 0.33 -0.1 550,459 - Echvi_0494 0.33 -1.6 550,499 + Echvi_0494 0.36 +2.1 550,501 + Echvi_0494 0.36 -0.7 550,502 - Echvi_0494 0.37 +0.1 550,521 - Echvi_0494 0.38 -0.7 550,521 - Echvi_0494 0.38 -1.2 550,583 - Echvi_0494 0.44 +1.8 550,583 - Echvi_0494 0.44 -0.2 550,616 + Echvi_0494 0.46 +0.2 550,617 - Echvi_0494 0.47 -1.0 550,631 - Echvi_0494 0.48 -0.2 550,641 - Echvi_0494 0.49 -1.4 550,650 - Echvi_0494 0.49 -0.9 550,653 + Echvi_0494 0.50 -0.2 550,653 + Echvi_0494 0.50 +0.4 550,653 + Echvi_0494 0.50 -1.4 550,654 - Echvi_0494 0.50 +1.0 550,703 + Echvi_0494 0.54 -0.1 550,744 + Echvi_0494 0.58 -0.9 550,745 - Echvi_0494 0.58 -1.0 550,810 + Echvi_0494 0.63 -1.4 550,832 + +2.1 550,833 - Echvi_0494 0.65 -1.5 550,865 - Echvi_0494 0.68 +0.1 550,876 + Echvi_0494 0.69 -0.8 550,983 + Echvi_0494 0.78 +1.4 550,986 - Echvi_0494 0.79 -0.7 550,986 - Echvi_0494 0.79 -0.1 551,074 + Echvi_0494 0.86 -0.0 551,150 - +0.6 551,215 + -0.1 551,216 - -0.7 551,218 - -2.2 551,218 - +0.3 551,218 - -0.5 551,218 - +1.1 551,218 - +0.0 551,256 + +2.5 551,256 + +0.5 551,256 + -1.4 551,259 - -0.5 551,259 - -0.6 551,302 - -0.0 551,304 + +0.6 551,308 + +0.6 551,308 + +0.1 551,309 - -1.4 551,318 + +0.3 551,319 - -1.7 551,362 + -0.2 551,541 + Echvi_0495 0.24 -1.0 551,541 + Echvi_0495 0.24 +1.1 551,684 + Echvi_0495 0.38 -1.4 551,687 + Echvi_0495 0.38 +1.3 551,687 + Echvi_0495 0.38 -0.9 551,688 - Echvi_0495 0.39 -1.0 551,785 + Echvi_0495 0.48 -1.9 551,787 + Echvi_0495 0.48 -0.1 551,787 + Echvi_0495 0.48 -0.3 551,788 - Echvi_0495 0.49 -0.2 551,788 - Echvi_0495 0.49 +0.0 551,900 + Echvi_0495 0.60 -1.1 551,900 + Echvi_0495 0.60 -0.1 551,900 + Echvi_0495 0.60 -0.2 551,901 - Echvi_0495 0.60 -0.5 551,901 - Echvi_0495 0.60 -0.3 551,982 + Echvi_0495 0.68 -0.1 551,983 - Echvi_0495 0.68 +0.6 551,986 - Echvi_0495 0.68 -0.4 551,986 - Echvi_0495 0.68 +1.3 551,995 + Echvi_0495 0.69 +1.2 551,997 + Echvi_0495 0.69 +0.9 551,997 + Echvi_0495 0.69 +0.4 551,997 + Echvi_0495 0.69 -0.2 551,998 - Echvi_0495 0.70 -1.8 552,133 + Echvi_0495 0.83 +1.1 552,133 + Echvi_0495 0.83 -0.1 552,134 - Echvi_0495 0.83 -0.2 552,134 - Echvi_0495 0.83 +0.3 552,134 - Echvi_0495 0.83 -0.7 552,136 - Echvi_0495 0.83 -0.9 552,136 - Echvi_0495 0.83 -1.1 552,136 - Echvi_0495 0.83 -0.4 552,136 - Echvi_0495 0.83 -0.1 552,136 - Echvi_0495 0.83 +0.9 552,136 - Echvi_0495 0.83 +0.7 552,138 + Echvi_0495 0.84 +1.6 552,138 + Echvi_0495 0.84 +1.9 552,139 - Echvi_0495 0.84 +1.1 552,139 - Echvi_0495 0.84 -1.2 552,139 - Echvi_0495 0.84 +0.1 552,164 + Echvi_0495 0.86 -3.3 552,166 + Echvi_0495 0.86 +0.6 552,167 - Echvi_0495 0.86 +1.0
Or see this region's nucleotide sequence