Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0449 and Echvi_0450 are separated by 80 nucleotides Echvi_0450 and Echvi_0451 are separated by 120 nucleotides Echvi_0451 and Echvi_0452 are separated by 8 nucleotides Echvi_0452 and Echvi_0453 are separated by 199 nucleotides
Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480
_0449
Echvi_0450: Echvi_0450 - hypothetical protein, at 493,561 to 494,091
_0450
Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504
_0451
Echvi_0452: Echvi_0452 - hypothetical protein, at 495,513 to 496,055
_0452
Echvi_0453: Echvi_0453 - RNA polymerase sigma factor, sigma-70 family, at 496,255 to 496,812
_0453
Position (kb) 494
495
496 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 493.246 kb on + strand, within Echvi_0449 at 493.247 kb on - strand, within Echvi_0449 at 493.276 kb on + strand, within Echvi_0449 at 493.286 kb on - strand, within Echvi_0449 at 493.432 kb on + strand at 493.432 kb on + strand at 493.433 kb on - strand at 493.433 kb on - strand at 493.435 kb on + strand at 493.435 kb on + strand at 493.436 kb on - strand at 493.437 kb on + strand at 493.438 kb on - strand at 493.451 kb on + strand at 493.451 kb on + strand at 493.451 kb on + strand at 493.452 kb on - strand at 493.452 kb on - strand at 493.475 kb on + strand at 493.476 kb on - strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.488 kb on - strand at 493.490 kb on + strand at 493.491 kb on - strand at 493.527 kb on - strand at 493.550 kb on + strand at 493.563 kb on - strand at 493.661 kb on - strand, within Echvi_0450 at 493.702 kb on - strand, within Echvi_0450 at 493.717 kb on + strand, within Echvi_0450 at 493.718 kb on - strand, within Echvi_0450 at 493.825 kb on - strand, within Echvi_0450 at 493.863 kb on + strand, within Echvi_0450 at 493.919 kb on + strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.963 kb on + strand, within Echvi_0450 at 493.963 kb on + strand, within Echvi_0450 at 493.964 kb on - strand, within Echvi_0450 at 494.074 kb on + strand at 494.116 kb on + strand at 494.126 kb on + strand at 494.128 kb on + strand at 494.177 kb on - strand at 494.210 kb on + strand at 494.213 kb on + strand at 494.220 kb on + strand at 494.220 kb on + strand at 494.238 kb on - strand at 494.243 kb on - strand at 494.271 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.292 kb on + strand at 494.348 kb on + strand, within Echvi_0451 at 494.349 kb on - strand, within Echvi_0451 at 494.407 kb on - strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.409 kb on - strand, within Echvi_0451 at 494.409 kb on - strand, within Echvi_0451 at 494.507 kb on + strand, within Echvi_0451 at 494.510 kb on + strand, within Echvi_0451 at 494.620 kb on + strand, within Echvi_0451 at 494.621 kb on - strand, within Echvi_0451 at 494.621 kb on - strand, within Echvi_0451 at 494.625 kb on - strand, within Echvi_0451 at 494.637 kb on + strand, within Echvi_0451 at 494.683 kb on - strand, within Echvi_0451 at 494.683 kb on - strand, within Echvi_0451 at 494.685 kb on + strand, within Echvi_0451 at 494.685 kb on + strand, within Echvi_0451 at 494.692 kb on + strand, within Echvi_0451 at 494.693 kb on - strand, within Echvi_0451 at 494.698 kb on - strand, within Echvi_0451 at 494.698 kb on - strand, within Echvi_0451 at 494.759 kb on + strand, within Echvi_0451 at 494.772 kb on + strand, within Echvi_0451 at 494.804 kb on + strand, within Echvi_0451 at 494.814 kb on + strand, within Echvi_0451 at 494.815 kb on - strand, within Echvi_0451 at 494.817 kb on + strand, within Echvi_0451 at 494.824 kb on + strand, within Echvi_0451 at 494.825 kb on - strand, within Echvi_0451 at 494.825 kb on - strand, within Echvi_0451 at 494.825 kb on - strand, within Echvi_0451 at 494.826 kb on + strand, within Echvi_0451 at 494.959 kb on + strand, within Echvi_0451 at 495.086 kb on - strand, within Echvi_0451 at 495.090 kb on + strand, within Echvi_0451 at 495.190 kb on + strand, within Echvi_0451 at 495.218 kb on - strand, within Echvi_0451 at 495.218 kb on - strand, within Echvi_0451 at 495.218 kb on - strand, within Echvi_0451 at 495.218 kb on - strand, within Echvi_0451 at 495.221 kb on + strand, within Echvi_0451 at 495.221 kb on + strand, within Echvi_0451 at 495.221 kb on + strand, within Echvi_0451 at 495.222 kb on - strand, within Echvi_0451 at 495.222 kb on - strand, within Echvi_0451 at 495.222 kb on - strand, within Echvi_0451 at 495.224 kb on - strand, within Echvi_0451 at 495.264 kb on + strand, within Echvi_0451 at 495.308 kb on + strand, within Echvi_0451 at 495.308 kb on + strand, within Echvi_0451 at 495.308 kb on + strand, within Echvi_0451 at 495.308 kb on + strand, within Echvi_0451 at 495.309 kb on - strand, within Echvi_0451 at 495.355 kb on - strand, within Echvi_0451 at 495.424 kb on - strand at 495.507 kb on + strand at 495.519 kb on - strand at 495.589 kb on + strand, within Echvi_0452 at 495.745 kb on + strand, within Echvi_0452 at 495.787 kb on - strand, within Echvi_0452 at 495.787 kb on - strand, within Echvi_0452 at 495.788 kb on + strand, within Echvi_0452 at 495.788 kb on + strand, within Echvi_0452 at 495.789 kb on - strand, within Echvi_0452 at 495.789 kb on - strand, within Echvi_0452 at 495.820 kb on + strand, within Echvi_0452 at 495.889 kb on + strand, within Echvi_0452 at 495.899 kb on + strand, within Echvi_0452 at 495.900 kb on - strand, within Echvi_0452 at 495.907 kb on - strand, within Echvi_0452 at 495.925 kb on + strand, within Echvi_0452 at 495.926 kb on - strand, within Echvi_0452 at 495.926 kb on - strand, within Echvi_0452 at 495.972 kb on - strand, within Echvi_0452 at 496.124 kb on + strand at 496.156 kb on + strand at 496.156 kb on + strand at 496.158 kb on + strand at 496.158 kb on + strand at 496.158 kb on + strand at 496.159 kb on - strand at 496.159 kb on - strand at 496.192 kb on + strand at 496.192 kb on + strand at 496.230 kb on + strand at 496.238 kb on - strand at 496.252 kb on + strand at 496.287 kb on - strand at 496.290 kb on + strand at 496.291 kb on - strand at 496.291 kb on - strand at 496.321 kb on + strand, within Echvi_0453 at 496.323 kb on + strand, within Echvi_0453 at 496.323 kb on + strand, within Echvi_0453 at 496.324 kb on - strand, within Echvi_0453 at 496.363 kb on + strand, within Echvi_0453 at 496.368 kb on + strand, within Echvi_0453 at 496.380 kb on + strand, within Echvi_0453 at 496.381 kb on - strand, within Echvi_0453 at 496.381 kb on - strand, within Echvi_0453 at 496.381 kb on - strand, within Echvi_0453 at 496.381 kb on - strand, within Echvi_0453 at 496.412 kb on + strand, within Echvi_0453 at 496.412 kb on + strand, within Echvi_0453 at 496.413 kb on - strand, within Echvi_0453 at 496.415 kb on + strand, within Echvi_0453 at 496.415 kb on + strand, within Echvi_0453 at 496.416 kb on - strand, within Echvi_0453 at 496.416 kb on - strand, within Echvi_0453 at 496.416 kb on - strand, within Echvi_0453 at 496.433 kb on + strand, within Echvi_0453 at 496.497 kb on + strand, within Echvi_0453
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 493,246 + Echvi_0449 0.79 -0.5 493,247 - Echvi_0449 0.79 +1.2 493,276 + Echvi_0449 0.82 +1.9 493,286 - Echvi_0449 0.83 +0.0 493,432 + -1.1 493,432 + -0.5 493,433 - +0.0 493,433 - +0.2 493,435 + -0.1 493,435 + -0.5 493,436 - -1.2 493,437 + -0.9 493,438 - +0.0 493,451 + -0.5 493,451 + -1.4 493,451 + -1.8 493,452 - +1.3 493,452 - +0.9 493,475 + +0.0 493,476 - -0.5 493,487 + +0.2 493,487 + -1.6 493,487 + +1.3 493,487 + +0.2 493,488 - +0.8 493,490 + -0.5 493,491 - -0.2 493,527 - -0.1 493,550 + -0.7 493,563 - -0.7 493,661 - Echvi_0450 0.19 +3.1 493,702 - Echvi_0450 0.27 +1.1 493,717 + Echvi_0450 0.29 -2.0 493,718 - Echvi_0450 0.30 -0.2 493,825 - Echvi_0450 0.50 -1.3 493,863 + Echvi_0450 0.57 -0.1 493,919 + Echvi_0450 0.67 -0.6 493,920 - Echvi_0450 0.68 -0.0 493,920 - Echvi_0450 0.68 +0.7 493,920 - Echvi_0450 0.68 +0.5 493,963 + Echvi_0450 0.76 -0.1 493,963 + Echvi_0450 0.76 +1.0 493,964 - Echvi_0450 0.76 -1.2 494,074 + +1.2 494,116 + +0.8 494,126 + -0.9 494,128 + -0.5 494,177 - -0.3 494,210 + +0.5 494,213 + +0.6 494,220 + +0.4 494,220 + +0.7 494,238 - +1.5 494,243 - +0.7 494,271 + -1.0 494,273 + -0.7 494,273 + +1.1 494,273 + +0.4 494,273 + +1.5 494,292 + -0.3 494,348 + Echvi_0451 0.11 +2.8 494,349 - Echvi_0451 0.11 +1.2 494,407 - Echvi_0451 0.15 -0.5 494,408 + Echvi_0451 0.15 -0.5 494,408 + Echvi_0451 0.15 +0.3 494,408 + Echvi_0451 0.15 -0.0 494,408 + Echvi_0451 0.15 -1.2 494,409 - Echvi_0451 0.15 +0.3 494,409 - Echvi_0451 0.15 +0.2 494,507 + Echvi_0451 0.23 -0.7 494,510 + Echvi_0451 0.23 +1.3 494,620 + Echvi_0451 0.32 +1.2 494,621 - Echvi_0451 0.32 -0.7 494,621 - Echvi_0451 0.32 -2.0 494,625 - Echvi_0451 0.32 -0.7 494,637 + Echvi_0451 0.33 -2.0 494,683 - Echvi_0451 0.36 +0.3 494,683 - Echvi_0451 0.36 -0.9 494,685 + Echvi_0451 0.37 +0.4 494,685 + Echvi_0451 0.37 +1.1 494,692 + Echvi_0451 0.37 +0.7 494,693 - Echvi_0451 0.37 +2.6 494,698 - Echvi_0451 0.38 +0.5 494,698 - Echvi_0451 0.38 +1.1 494,759 + Echvi_0451 0.42 +1.0 494,772 + Echvi_0451 0.43 -0.4 494,804 + Echvi_0451 0.46 -0.0 494,814 + Echvi_0451 0.47 +2.1 494,815 - Echvi_0451 0.47 +1.3 494,817 + Echvi_0451 0.47 +0.7 494,824 + Echvi_0451 0.47 -1.2 494,825 - Echvi_0451 0.47 +0.4 494,825 - Echvi_0451 0.47 +0.2 494,825 - Echvi_0451 0.47 +1.1 494,826 + Echvi_0451 0.47 +0.9 494,959 + Echvi_0451 0.58 -0.1 495,086 - Echvi_0451 0.68 -0.8 495,090 + Echvi_0451 0.68 -0.5 495,190 + Echvi_0451 0.76 -1.0 495,218 - Echvi_0451 0.78 +0.0 495,218 - Echvi_0451 0.78 +0.6 495,218 - Echvi_0451 0.78 -0.7 495,218 - Echvi_0451 0.78 +0.0 495,221 + Echvi_0451 0.78 -0.7 495,221 + Echvi_0451 0.78 -0.4 495,221 + Echvi_0451 0.78 +1.0 495,222 - Echvi_0451 0.78 +0.5 495,222 - Echvi_0451 0.78 +0.3 495,222 - Echvi_0451 0.78 -0.5 495,224 - Echvi_0451 0.78 -0.3 495,264 + Echvi_0451 0.81 +0.1 495,308 + Echvi_0451 0.85 -0.3 495,308 + Echvi_0451 0.85 +0.5 495,308 + Echvi_0451 0.85 -0.9 495,308 + Echvi_0451 0.85 -1.0 495,309 - Echvi_0451 0.85 +0.7 495,355 - Echvi_0451 0.88 +0.4 495,424 - +0.5 495,507 + -0.3 495,519 - -0.2 495,589 + Echvi_0452 0.14 -1.6 495,745 + Echvi_0452 0.43 -0.5 495,787 - Echvi_0452 0.50 +0.7 495,787 - Echvi_0452 0.50 -1.4 495,788 + Echvi_0452 0.51 +0.4 495,788 + Echvi_0452 0.51 -0.6 495,789 - Echvi_0452 0.51 +0.6 495,789 - Echvi_0452 0.51 +0.4 495,820 + Echvi_0452 0.57 +1.5 495,889 + Echvi_0452 0.69 +0.1 495,899 + Echvi_0452 0.71 -0.1 495,900 - Echvi_0452 0.71 +1.0 495,907 - Echvi_0452 0.73 +0.6 495,925 + Echvi_0452 0.76 +0.8 495,926 - Echvi_0452 0.76 +0.5 495,926 - Echvi_0452 0.76 -0.3 495,972 - Echvi_0452 0.85 -1.0 496,124 + -0.1 496,156 + +1.8 496,156 + -0.6 496,158 + +0.5 496,158 + -1.9 496,158 + +0.7 496,159 - +2.1 496,159 - -0.8 496,192 + -0.7 496,192 + -0.5 496,230 + -1.0 496,238 - +1.2 496,252 + +0.1 496,287 - -1.3 496,290 + +1.1 496,291 - -1.0 496,291 - +0.2 496,321 + Echvi_0453 0.12 +2.1 496,323 + Echvi_0453 0.12 +1.5 496,323 + Echvi_0453 0.12 -0.6 496,324 - Echvi_0453 0.12 -0.2 496,363 + Echvi_0453 0.19 +0.3 496,368 + Echvi_0453 0.20 +0.8 496,380 + Echvi_0453 0.22 +0.7 496,381 - Echvi_0453 0.23 +0.1 496,381 - Echvi_0453 0.23 -0.1 496,381 - Echvi_0453 0.23 +0.3 496,381 - Echvi_0453 0.23 -0.6 496,412 + Echvi_0453 0.28 +0.0 496,412 + Echvi_0453 0.28 +2.4 496,413 - Echvi_0453 0.28 -0.5 496,415 + Echvi_0453 0.29 -0.0 496,415 + Echvi_0453 0.29 +0.3 496,416 - Echvi_0453 0.29 -0.9 496,416 - Echvi_0453 0.29 -0.2 496,416 - Echvi_0453 0.29 +1.1 496,433 + Echvi_0453 0.32 -1.5 496,497 + Echvi_0453 0.43 +1.4
Or see this region's nucleotide sequence