Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0442

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0441 and Echvi_0442 are separated by 6 nucleotidesEchvi_0442 and Echvi_0443 overlap by 26 nucleotidesEchvi_0443 and Echvi_0444 are separated by 33 nucleotides Echvi_0441: Echvi_0441 - Predicted ATP-dependent endonuclease of the OLD family, at 479,953 to 481,680 _0441 Echvi_0442: Echvi_0442 - Superfamily I DNA and RNA helicases, at 481,687 to 483,507 _0442 Echvi_0443: Echvi_0443 - hypothetical protein, at 483,482 to 483,580 _0443 Echvi_0444: Echvi_0444 - Superfamily II DNA/RNA helicases, SNF2 family, at 483,614 to 487,027 _0444 Position (kb) 481 482 483 484Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 480.705 kb on - strand, within Echvi_0441at 480.748 kb on - strand, within Echvi_0441at 480.748 kb on - strand, within Echvi_0441at 480.748 kb on - strand, within Echvi_0441at 480.756 kb on + strand, within Echvi_0441at 480.756 kb on + strand, within Echvi_0441at 480.762 kb on + strand, within Echvi_0441at 480.794 kb on - strand, within Echvi_0441at 480.796 kb on - strand, within Echvi_0441at 480.804 kb on + strand, within Echvi_0441at 480.805 kb on - strand, within Echvi_0441at 480.810 kb on + strand, within Echvi_0441at 480.811 kb on - strand, within Echvi_0441at 480.811 kb on - strand, within Echvi_0441at 480.816 kb on + strand, within Echvi_0441at 480.820 kb on - strand, within Echvi_0441at 480.849 kb on - strand, within Echvi_0441at 480.870 kb on - strand, within Echvi_0441at 480.872 kb on + strand, within Echvi_0441at 480.873 kb on - strand, within Echvi_0441at 480.873 kb on - strand, within Echvi_0441at 480.910 kb on + strand, within Echvi_0441at 480.913 kb on - strand, within Echvi_0441at 480.913 kb on - strand, within Echvi_0441at 480.924 kb on + strand, within Echvi_0441at 480.924 kb on + strand, within Echvi_0441at 480.925 kb on - strand, within Echvi_0441at 480.925 kb on - strand, within Echvi_0441at 480.962 kb on + strand, within Echvi_0441at 480.962 kb on + strand, within Echvi_0441at 480.982 kb on + strand, within Echvi_0441at 480.982 kb on + strand, within Echvi_0441at 480.983 kb on - strand, within Echvi_0441at 480.983 kb on - strand, within Echvi_0441at 480.987 kb on + strand, within Echvi_0441at 480.987 kb on + strand, within Echvi_0441at 481.015 kb on - strand, within Echvi_0441at 481.036 kb on - strand, within Echvi_0441at 481.041 kb on + strand, within Echvi_0441at 481.041 kb on + strand, within Echvi_0441at 481.041 kb on + strand, within Echvi_0441at 481.042 kb on - strand, within Echvi_0441at 481.093 kb on + strand, within Echvi_0441at 481.096 kb on - strand, within Echvi_0441at 481.146 kb on + strand, within Echvi_0441at 481.147 kb on - strand, within Echvi_0441at 481.203 kb on - strand, within Echvi_0441at 481.203 kb on - strand, within Echvi_0441at 481.226 kb on - strand, within Echvi_0441at 481.250 kb on + strand, within Echvi_0441at 481.250 kb on + strand, within Echvi_0441at 481.256 kb on + strand, within Echvi_0441at 481.256 kb on + strand, within Echvi_0441at 481.256 kb on + strand, within Echvi_0441at 481.257 kb on - strand, within Echvi_0441at 481.257 kb on - strand, within Echvi_0441at 481.257 kb on - strand, within Echvi_0441at 481.257 kb on - strand, within Echvi_0441at 481.317 kb on + strand, within Echvi_0441at 481.334 kb on + strand, within Echvi_0441at 481.335 kb on - strand, within Echvi_0441at 481.342 kb on - strand, within Echvi_0441at 481.351 kb on - strand, within Echvi_0441at 481.382 kb on + strand, within Echvi_0441at 481.383 kb on - strand, within Echvi_0441at 481.431 kb on - strand, within Echvi_0441at 481.438 kb on - strand, within Echvi_0441at 481.492 kb on - strand, within Echvi_0441at 481.492 kb on - strand, within Echvi_0441at 481.492 kb on - strand, within Echvi_0441at 481.492 kb on - strand, within Echvi_0441at 481.493 kb on + strand, within Echvi_0441at 481.494 kb on - strand, within Echvi_0441at 481.494 kb on - strand, within Echvi_0441at 481.494 kb on - strand, within Echvi_0441at 481.494 kb on - strand, within Echvi_0441at 481.497 kb on - strand, within Echvi_0441at 481.664 kb on + strandat 481.665 kb on - strandat 481.706 kb on + strandat 481.794 kb on + strandat 481.800 kb on - strandat 481.869 kb on + strand, within Echvi_0442at 481.869 kb on + strand, within Echvi_0442at 481.870 kb on - strand, within Echvi_0442at 481.894 kb on - strand, within Echvi_0442at 481.911 kb on - strand, within Echvi_0442at 481.911 kb on - strand, within Echvi_0442at 481.939 kb on - strand, within Echvi_0442at 481.947 kb on + strand, within Echvi_0442at 481.947 kb on + strand, within Echvi_0442at 481.947 kb on + strand, within Echvi_0442at 481.947 kb on + strand, within Echvi_0442at 481.947 kb on + strand, within Echvi_0442at 481.951 kb on + strand, within Echvi_0442at 481.961 kb on - strand, within Echvi_0442at 481.991 kb on - strand, within Echvi_0442at 481.991 kb on - strand, within Echvi_0442at 482.025 kb on - strand, within Echvi_0442at 482.047 kb on - strand, within Echvi_0442at 482.136 kb on + strand, within Echvi_0442at 482.139 kb on + strand, within Echvi_0442at 482.218 kb on - strand, within Echvi_0442at 482.225 kb on + strand, within Echvi_0442at 482.238 kb on - strand, within Echvi_0442at 482.241 kb on + strand, within Echvi_0442at 482.241 kb on + strand, within Echvi_0442at 482.259 kb on - strand, within Echvi_0442at 482.303 kb on + strand, within Echvi_0442at 482.303 kb on + strand, within Echvi_0442at 482.306 kb on + strand, within Echvi_0442at 482.323 kb on - strand, within Echvi_0442at 482.328 kb on + strand, within Echvi_0442at 482.328 kb on + strand, within Echvi_0442at 482.328 kb on + strand, within Echvi_0442at 482.328 kb on + strand, within Echvi_0442at 482.329 kb on - strand, within Echvi_0442at 482.376 kb on - strand, within Echvi_0442at 482.397 kb on + strand, within Echvi_0442at 482.475 kb on + strand, within Echvi_0442at 482.475 kb on + strand, within Echvi_0442at 482.522 kb on - strand, within Echvi_0442at 482.556 kb on + strand, within Echvi_0442at 482.557 kb on - strand, within Echvi_0442at 482.581 kb on - strand, within Echvi_0442at 482.581 kb on - strand, within Echvi_0442at 482.585 kb on + strand, within Echvi_0442at 482.585 kb on + strand, within Echvi_0442at 482.586 kb on - strand, within Echvi_0442at 482.628 kb on - strand, within Echvi_0442at 482.655 kb on - strand, within Echvi_0442at 482.740 kb on - strand, within Echvi_0442at 482.745 kb on + strand, within Echvi_0442at 482.763 kb on - strand, within Echvi_0442at 482.778 kb on - strand, within Echvi_0442at 482.802 kb on + strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.852 kb on - strand, within Echvi_0442at 482.856 kb on + strand, within Echvi_0442at 482.927 kb on + strand, within Echvi_0442at 482.934 kb on + strand, within Echvi_0442at 482.935 kb on - strand, within Echvi_0442at 482.971 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.977 kb on - strand, within Echvi_0442at 482.982 kb on + strand, within Echvi_0442at 483.060 kb on + strand, within Echvi_0442at 483.060 kb on + strand, within Echvi_0442at 483.066 kb on - strandat 483.104 kb on + strand, within Echvi_0442at 483.105 kb on - strand, within Echvi_0442at 483.126 kb on - strand, within Echvi_0442at 483.132 kb on + strand, within Echvi_0442at 483.204 kb on + strand, within Echvi_0442at 483.205 kb on - strand, within Echvi_0442at 483.205 kb on - strand, within Echvi_0442at 483.207 kb on - strand, within Echvi_0442at 483.224 kb on + strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.269 kb on + strand, within Echvi_0442at 483.269 kb on + strand, within Echvi_0442at 483.273 kb on - strand, within Echvi_0442at 483.279 kb on + strand, within Echvi_0442at 483.279 kb on + strand, within Echvi_0442at 483.280 kb on - strand, within Echvi_0442at 483.285 kb on + strand, within Echvi_0442at 483.315 kb on - strand, within Echvi_0442at 483.421 kb on + strandat 483.578 kb on + strandat 483.579 kb on - strandat 483.601 kb on - strandat 483.601 kb on - strandat 483.602 kb on + strandat 483.640 kb on + strandat 483.660 kb on - strandat 483.740 kb on - strandat 483.740 kb on - strandat 483.987 kb on + strandat 483.993 kb on + strand, within Echvi_0444at 483.994 kb on - strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.139 kb on - strand, within Echvi_0444at 484.140 kb on + strand, within Echvi_0444at 484.141 kb on - strand, within Echvi_0444at 484.182 kb on - strand, within Echvi_0444at 484.207 kb on + strand, within Echvi_0444at 484.207 kb on + strand, within Echvi_0444at 484.222 kb on + strand, within Echvi_0444at 484.266 kb on + strand, within Echvi_0444at 484.317 kb on + strand, within Echvi_0444at 484.403 kb on + strand, within Echvi_0444at 484.403 kb on + strand, within Echvi_0444at 484.404 kb on - strand, within Echvi_0444

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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480,705 - Echvi_0441 0.44 +1.0
480,748 - Echvi_0441 0.46 -0.1
480,748 - Echvi_0441 0.46 -1.6
480,748 - Echvi_0441 0.46 +2.4
480,756 + Echvi_0441 0.46 +0.1
480,756 + Echvi_0441 0.46 -0.3
480,762 + Echvi_0441 0.47 +0.5
480,794 - Echvi_0441 0.49 -1.6
480,796 - Echvi_0441 0.49 -1.0
480,804 + Echvi_0441 0.49 +0.9
480,805 - Echvi_0441 0.49 -0.9
480,810 + Echvi_0441 0.50 +1.7
480,811 - Echvi_0441 0.50 -0.0
480,811 - Echvi_0441 0.50 +0.1
480,816 + Echvi_0441 0.50 -0.1
480,820 - Echvi_0441 0.50 -0.9
480,849 - Echvi_0441 0.52 -0.5
480,870 - Echvi_0441 0.53 +0.4
480,872 + Echvi_0441 0.53 +0.1
480,873 - Echvi_0441 0.53 -0.7
480,873 - Echvi_0441 0.53 -0.3
480,910 + Echvi_0441 0.55 +0.0
480,913 - Echvi_0441 0.56 -2.8
480,913 - Echvi_0441 0.56 -1.3
480,924 + Echvi_0441 0.56 +0.1
480,924 + Echvi_0441 0.56 +0.6
480,925 - Echvi_0441 0.56 +0.1
480,925 - Echvi_0441 0.56 +0.0
480,962 + Echvi_0441 0.58 -0.2
480,962 + Echvi_0441 0.58 -0.0
480,982 + Echvi_0441 0.60 +0.4
480,982 + Echvi_0441 0.60 -0.2
480,983 - Echvi_0441 0.60 -1.4
480,983 - Echvi_0441 0.60 -0.3
480,987 + Echvi_0441 0.60 -0.5
480,987 + Echvi_0441 0.60 -2.3
481,015 - Echvi_0441 0.61 -0.1
481,036 - Echvi_0441 0.63 +0.3
481,041 + Echvi_0441 0.63 -1.0
481,041 + Echvi_0441 0.63 +1.2
481,041 + Echvi_0441 0.63 +0.6
481,042 - Echvi_0441 0.63 -0.0
481,093 + Echvi_0441 0.66 +0.0
481,096 - Echvi_0441 0.66 -0.1
481,146 + Echvi_0441 0.69 +0.9
481,147 - Echvi_0441 0.69 -1.2
481,203 - Echvi_0441 0.72 -1.1
481,203 - Echvi_0441 0.72 -1.6
481,226 - Echvi_0441 0.74 +0.5
481,250 + Echvi_0441 0.75 -0.6
481,250 + Echvi_0441 0.75 +1.1
481,256 + Echvi_0441 0.75 +0.0
481,256 + Echvi_0441 0.75 -1.1
481,256 + Echvi_0441 0.75 -2.3
481,257 - Echvi_0441 0.75 +0.5
481,257 - Echvi_0441 0.75 -0.2
481,257 - Echvi_0441 0.75 -0.3
481,257 - Echvi_0441 0.75 +0.3
481,317 + Echvi_0441 0.79 +0.3
481,334 + Echvi_0441 0.80 +0.5
481,335 - Echvi_0441 0.80 +0.3
481,342 - Echvi_0441 0.80 -0.7
481,351 - Echvi_0441 0.81 +0.5
481,382 + Echvi_0441 0.83 +0.5
481,383 - Echvi_0441 0.83 +0.1
481,431 - Echvi_0441 0.86 -0.4
481,438 - Echvi_0441 0.86 +0.3
481,492 - Echvi_0441 0.89 -1.0
481,492 - Echvi_0441 0.89 -0.8
481,492 - Echvi_0441 0.89 -2.7
481,492 - Echvi_0441 0.89 -0.2
481,493 + Echvi_0441 0.89 +0.9
481,494 - Echvi_0441 0.89 +0.7
481,494 - Echvi_0441 0.89 +0.1
481,494 - Echvi_0441 0.89 -1.9
481,494 - Echvi_0441 0.89 -0.3
481,497 - Echvi_0441 0.89 +0.1
481,664 + -0.2
481,665 - +0.0
481,706 + +1.1
481,794 + -2.4
481,800 - -0.2
481,869 + Echvi_0442 0.10 -0.8
481,869 + Echvi_0442 0.10 -0.5
481,870 - Echvi_0442 0.10 -0.1
481,894 - Echvi_0442 0.11 +0.5
481,911 - Echvi_0442 0.12 +0.3
481,911 - Echvi_0442 0.12 +0.3
481,939 - Echvi_0442 0.14 -0.6
481,947 + Echvi_0442 0.14 -1.2
481,947 + Echvi_0442 0.14 +0.5
481,947 + Echvi_0442 0.14 +0.5
481,947 + Echvi_0442 0.14 -0.3
481,947 + Echvi_0442 0.14 +1.0
481,951 + Echvi_0442 0.14 +0.2
481,961 - Echvi_0442 0.15 -1.0
481,991 - Echvi_0442 0.17 -0.5
481,991 - Echvi_0442 0.17 -0.4
482,025 - Echvi_0442 0.19 -2.3
482,047 - Echvi_0442 0.20 -0.4
482,136 + Echvi_0442 0.25 +0.8
482,139 + Echvi_0442 0.25 +0.2
482,218 - Echvi_0442 0.29 -2.1
482,225 + Echvi_0442 0.30 -0.7
482,238 - Echvi_0442 0.30 +2.4
482,241 + Echvi_0442 0.30 -0.2
482,241 + Echvi_0442 0.30 +1.1
482,259 - Echvi_0442 0.31 -1.2
482,303 + Echvi_0442 0.34 +0.5
482,303 + Echvi_0442 0.34 +1.7
482,306 + Echvi_0442 0.34 -0.0
482,323 - Echvi_0442 0.35 -0.2
482,328 + Echvi_0442 0.35 +0.4
482,328 + Echvi_0442 0.35 +4.1
482,328 + Echvi_0442 0.35 -0.4
482,328 + Echvi_0442 0.35 -0.8
482,329 - Echvi_0442 0.35 +0.4
482,376 - Echvi_0442 0.38 -1.6
482,397 + Echvi_0442 0.39 -1.2
482,475 + Echvi_0442 0.43 -0.2
482,475 + Echvi_0442 0.43 +2.1
482,522 - Echvi_0442 0.46 -0.3
482,556 + Echvi_0442 0.48 -0.1
482,557 - Echvi_0442 0.48 -0.7
482,581 - Echvi_0442 0.49 -0.2
482,581 - Echvi_0442 0.49 -0.7
482,585 + Echvi_0442 0.49 +0.0
482,585 + Echvi_0442 0.49 -0.5
482,586 - Echvi_0442 0.49 +0.0
482,628 - Echvi_0442 0.52 -1.1
482,655 - Echvi_0442 0.53 -0.2
482,740 - Echvi_0442 0.58 -0.3
482,745 + Echvi_0442 0.58 -0.9
482,763 - Echvi_0442 0.59 -1.3
482,778 - Echvi_0442 0.60 -0.7
482,802 + Echvi_0442 0.61 -0.1
482,838 - Echvi_0442 0.63 -1.4
482,838 - Echvi_0442 0.63 +0.7
482,838 - Echvi_0442 0.63 +0.5
482,852 - Echvi_0442 0.64 +0.7
482,856 + Echvi_0442 0.64 +0.9
482,927 + Echvi_0442 0.68 +0.7
482,934 + Echvi_0442 0.68 -1.5
482,935 - Echvi_0442 0.69 -0.7
482,971 - Echvi_0442 0.71 -0.7
482,974 - Echvi_0442 0.71 +0.6
482,974 - Echvi_0442 0.71 -0.2
482,974 - Echvi_0442 0.71 -0.7
482,977 - Echvi_0442 0.71 -0.2
482,982 + Echvi_0442 0.71 +0.5
483,060 + Echvi_0442 0.75 -0.5
483,060 + Echvi_0442 0.75 -1.1
483,066 - -0.2
483,104 + Echvi_0442 0.78 +1.1
483,105 - Echvi_0442 0.78 -0.1
483,126 - Echvi_0442 0.79 -1.0
483,132 + Echvi_0442 0.79 +1.5
483,204 + Echvi_0442 0.83 +0.9
483,205 - Echvi_0442 0.83 -0.2
483,205 - Echvi_0442 0.83 +0.7
483,207 - Echvi_0442 0.83 -0.3
483,224 + Echvi_0442 0.84 +0.2
483,267 - Echvi_0442 0.87 +0.9
483,267 - Echvi_0442 0.87 -0.3
483,267 - Echvi_0442 0.87 -0.7
483,267 - Echvi_0442 0.87 -0.7
483,269 + Echvi_0442 0.87 -1.3
483,269 + Echvi_0442 0.87 +0.2
483,273 - Echvi_0442 0.87 -1.1
483,279 + Echvi_0442 0.87 +1.5
483,279 + Echvi_0442 0.87 +1.9
483,280 - Echvi_0442 0.87 -0.7
483,285 + Echvi_0442 0.88 +0.0
483,315 - Echvi_0442 0.89 -1.1
483,421 + -0.2
483,578 + -2.5
483,579 - -0.3
483,601 - -0.9
483,601 - -0.8
483,602 + -0.5
483,640 + -0.0
483,660 - +0.5
483,740 - +1.1
483,740 - +1.4
483,987 + +1.1
483,993 + Echvi_0444 0.11 +0.7
483,994 - Echvi_0444 0.11 -1.3
484,134 + Echvi_0444 0.15 -1.3
484,134 + Echvi_0444 0.15 +0.4
484,134 + Echvi_0444 0.15 -2.0
484,135 - Echvi_0444 0.15 +0.0
484,135 - Echvi_0444 0.15 +0.7
484,135 - Echvi_0444 0.15 +1.1
484,135 - Echvi_0444 0.15 +0.2
484,138 + Echvi_0444 0.15 +1.1
484,138 + Echvi_0444 0.15 +0.1
484,138 + Echvi_0444 0.15 +0.5
484,138 + Echvi_0444 0.15 +1.1
484,139 - Echvi_0444 0.15 +1.2
484,140 + Echvi_0444 0.15 +0.0
484,141 - Echvi_0444 0.15 +1.3
484,182 - Echvi_0444 0.17 +0.0
484,207 + Echvi_0444 0.17 -1.0
484,207 + Echvi_0444 0.17 -0.5
484,222 + Echvi_0444 0.18 +0.2
484,266 + Echvi_0444 0.19 +0.1
484,317 + Echvi_0444 0.21 -0.8
484,403 + Echvi_0444 0.23 +0.9
484,403 + Echvi_0444 0.23 -0.4
484,404 - Echvi_0444 0.23 +1.2

Or see this region's nucleotide sequence