Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0410

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0409 and Echvi_0410 are separated by 224 nucleotidesEchvi_0410 and Echvi_0411 are separated by 186 nucleotides Echvi_0409: Echvi_0409 - Sugar phosphate permease, at 448,148 to 449,395 _0409 Echvi_0410: Echvi_0410 - Transcriptional regulators, at 449,620 to 450,393 _0410 Echvi_0411: Echvi_0411 - FOG: Transposase and inactivated derivatives, at 450,580 to 451,812 _0411 Position (kb) 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 448.706 kb on + strand, within Echvi_0409at 448.722 kb on - strand, within Echvi_0409at 448.730 kb on + strand, within Echvi_0409at 448.778 kb on + strand, within Echvi_0409at 448.778 kb on + strand, within Echvi_0409at 448.808 kb on + strand, within Echvi_0409at 448.809 kb on - strand, within Echvi_0409at 448.863 kb on - strand, within Echvi_0409at 448.863 kb on - strand, within Echvi_0409at 448.900 kb on + strand, within Echvi_0409at 448.920 kb on + strand, within Echvi_0409at 448.920 kb on + strand, within Echvi_0409at 448.920 kb on + strand, within Echvi_0409at 448.921 kb on - strand, within Echvi_0409at 448.921 kb on - strand, within Echvi_0409at 448.934 kb on - strand, within Echvi_0409at 448.936 kb on + strand, within Echvi_0409at 448.942 kb on + strand, within Echvi_0409at 448.943 kb on - strand, within Echvi_0409at 449.031 kb on + strand, within Echvi_0409at 449.031 kb on + strand, within Echvi_0409at 449.099 kb on + strand, within Echvi_0409at 449.120 kb on + strand, within Echvi_0409at 449.137 kb on + strand, within Echvi_0409at 449.137 kb on + strand, within Echvi_0409at 449.137 kb on + strand, within Echvi_0409at 449.138 kb on - strand, within Echvi_0409at 449.138 kb on - strand, within Echvi_0409at 449.138 kb on - strand, within Echvi_0409at 449.141 kb on + strand, within Echvi_0409at 449.141 kb on + strand, within Echvi_0409at 449.142 kb on - strand, within Echvi_0409at 449.150 kb on + strand, within Echvi_0409at 449.150 kb on + strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.151 kb on - strand, within Echvi_0409at 449.229 kb on + strand, within Echvi_0409at 449.230 kb on - strand, within Echvi_0409at 449.230 kb on - strand, within Echvi_0409at 449.233 kb on + strand, within Echvi_0409at 449.233 kb on + strand, within Echvi_0409at 449.233 kb on + strand, within Echvi_0409at 449.262 kb on + strand, within Echvi_0409at 449.267 kb on + strand, within Echvi_0409at 449.268 kb on - strandat 449.294 kb on + strandat 449.299 kb on + strandat 449.303 kb on - strandat 449.318 kb on + strandat 449.318 kb on + strandat 449.318 kb on + strandat 449.338 kb on + strandat 449.339 kb on - strandat 449.348 kb on - strandat 449.357 kb on + strandat 449.444 kb on + strandat 449.493 kb on + strandat 449.503 kb on + strandat 449.504 kb on - strandat 449.504 kb on - strandat 449.515 kb on - strandat 449.637 kb on + strandat 449.637 kb on + strandat 449.687 kb on + strandat 449.702 kb on + strand, within Echvi_0410at 449.706 kb on - strand, within Echvi_0410at 449.730 kb on + strand, within Echvi_0410at 449.749 kb on + strand, within Echvi_0410at 449.786 kb on - strand, within Echvi_0410at 449.833 kb on - strand, within Echvi_0410at 449.859 kb on + strand, within Echvi_0410at 449.860 kb on - strand, within Echvi_0410at 449.879 kb on + strand, within Echvi_0410at 449.914 kb on - strand, within Echvi_0410at 449.945 kb on + strand, within Echvi_0410at 449.961 kb on + strand, within Echvi_0410at 449.965 kb on + strand, within Echvi_0410at 449.965 kb on + strand, within Echvi_0410at 449.965 kb on + strand, within Echvi_0410at 449.966 kb on - strand, within Echvi_0410at 449.966 kb on - strandat 449.967 kb on + strand, within Echvi_0410at 449.968 kb on - strand, within Echvi_0410at 450.021 kb on + strand, within Echvi_0410at 450.022 kb on - strand, within Echvi_0410at 450.023 kb on + strand, within Echvi_0410at 450.024 kb on - strand, within Echvi_0410at 450.038 kb on - strand, within Echvi_0410at 450.050 kb on - strand, within Echvi_0410at 450.050 kb on - strand, within Echvi_0410at 450.061 kb on + strand, within Echvi_0410at 450.062 kb on - strand, within Echvi_0410at 450.062 kb on - strand, within Echvi_0410at 450.062 kb on - strand, within Echvi_0410at 450.065 kb on - strand, within Echvi_0410at 450.079 kb on + strand, within Echvi_0410at 450.079 kb on + strand, within Echvi_0410at 450.154 kb on + strand, within Echvi_0410at 450.155 kb on - strand, within Echvi_0410at 450.214 kb on + strand, within Echvi_0410at 450.235 kb on - strand, within Echvi_0410at 450.267 kb on + strand, within Echvi_0410at 450.277 kb on + strand, within Echvi_0410at 450.277 kb on + strand, within Echvi_0410at 450.277 kb on + strand, within Echvi_0410at 450.284 kb on + strand, within Echvi_0410at 450.292 kb on + strand, within Echvi_0410at 450.319 kb on - strandat 450.347 kb on - strandat 450.360 kb on + strandat 450.361 kb on - strandat 450.370 kb on + strandat 450.372 kb on + strandat 450.372 kb on + strandat 450.372 kb on + strandat 450.373 kb on - strandat 450.373 kb on - strandat 450.470 kb on + strandat 450.470 kb on + strandat 450.472 kb on + strandat 450.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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448,706 + Echvi_0409 0.45 -1.0
448,722 - Echvi_0409 0.46 -0.5
448,730 + Echvi_0409 0.47 -0.7
448,778 + Echvi_0409 0.50 +1.3
448,778 + Echvi_0409 0.50 -0.0
448,808 + Echvi_0409 0.53 +2.4
448,809 - Echvi_0409 0.53 +1.0
448,863 - Echvi_0409 0.57 +0.4
448,863 - Echvi_0409 0.57 +2.4
448,900 + Echvi_0409 0.60 -1.2
448,920 + Echvi_0409 0.62 -0.7
448,920 + Echvi_0409 0.62 -0.6
448,920 + Echvi_0409 0.62 +1.1
448,921 - Echvi_0409 0.62 -0.9
448,921 - Echvi_0409 0.62 +1.7
448,934 - Echvi_0409 0.63 +0.3
448,936 + Echvi_0409 0.63 +0.0
448,942 + Echvi_0409 0.64 +0.3
448,943 - Echvi_0409 0.64 -0.2
449,031 + Echvi_0409 0.71 -1.4
449,031 + Echvi_0409 0.71 -1.4
449,099 + Echvi_0409 0.76 -1.2
449,120 + Echvi_0409 0.78 -0.3
449,137 + Echvi_0409 0.79 -0.2
449,137 + Echvi_0409 0.79 +0.1
449,137 + Echvi_0409 0.79 -1.9
449,138 - Echvi_0409 0.79 +0.5
449,138 - Echvi_0409 0.79 +2.4
449,138 - Echvi_0409 0.79 -1.2
449,141 + Echvi_0409 0.80 -1.3
449,141 + Echvi_0409 0.80 +2.5
449,142 - Echvi_0409 0.80 +1.0
449,150 + Echvi_0409 0.80 -0.7
449,150 + Echvi_0409 0.80 +1.1
449,151 - Echvi_0409 0.80 -0.7
449,151 - Echvi_0409 0.80 +0.6
449,151 - Echvi_0409 0.80 +0.4
449,151 - Echvi_0409 0.80 +0.6
449,151 - Echvi_0409 0.80 +0.5
449,229 + Echvi_0409 0.87 +0.4
449,230 - Echvi_0409 0.87 -0.9
449,230 - Echvi_0409 0.87 -1.1
449,233 + Echvi_0409 0.87 -0.6
449,233 + Echvi_0409 0.87 -0.6
449,233 + Echvi_0409 0.87 -1.1
449,262 + Echvi_0409 0.89 +0.7
449,267 + Echvi_0409 0.90 -0.8
449,268 - +2.7
449,294 + +0.2
449,299 + -0.0
449,303 - -0.5
449,318 + +1.1
449,318 + +0.5
449,318 + +0.4
449,338 + +0.4
449,339 - +0.3
449,348 - -3.0
449,357 + -2.0
449,444 + -1.3
449,493 + +0.1
449,503 + +0.7
449,504 - -3.6
449,504 - +0.5
449,515 - -1.0
449,637 + -0.7
449,637 + +0.3
449,687 + -0.5
449,702 + Echvi_0410 0.11 -0.1
449,706 - Echvi_0410 0.11 -2.5
449,730 + Echvi_0410 0.14 -1.1
449,749 + Echvi_0410 0.17 -0.9
449,786 - Echvi_0410 0.21 -0.5
449,833 - Echvi_0410 0.28 -0.8
449,859 + Echvi_0410 0.31 -1.2
449,860 - Echvi_0410 0.31 +2.5
449,879 + Echvi_0410 0.33 -1.3
449,914 - Echvi_0410 0.38 +0.9
449,945 + Echvi_0410 0.42 -1.1
449,961 + Echvi_0410 0.44 -0.9
449,965 + Echvi_0410 0.45 -0.6
449,965 + Echvi_0410 0.45 -0.5
449,965 + Echvi_0410 0.45 +0.9
449,966 - Echvi_0410 0.45 +0.8
449,966 - +1.1
449,967 + Echvi_0410 0.45 -0.7
449,968 - Echvi_0410 0.45 -0.2
450,021 + Echvi_0410 0.52 -1.5
450,022 - Echvi_0410 0.52 -1.7
450,023 + Echvi_0410 0.52 +0.9
450,024 - Echvi_0410 0.52 -2.7
450,038 - Echvi_0410 0.54 -0.5
450,050 - Echvi_0410 0.56 -1.2
450,050 - Echvi_0410 0.56 +1.5
450,061 + Echvi_0410 0.57 +0.7
450,062 - Echvi_0410 0.57 -0.2
450,062 - Echvi_0410 0.57 +0.3
450,062 - Echvi_0410 0.57 -0.5
450,065 - Echvi_0410 0.57 -1.4
450,079 + Echvi_0410 0.59 +0.1
450,079 + Echvi_0410 0.59 -0.0
450,154 + Echvi_0410 0.69 -3.0
450,155 - Echvi_0410 0.69 -2.0
450,214 + Echvi_0410 0.77 -0.0
450,235 - Echvi_0410 0.79 -1.2
450,267 + Echvi_0410 0.84 -0.2
450,277 + Echvi_0410 0.85 +0.1
450,277 + Echvi_0410 0.85 -2.3
450,277 + Echvi_0410 0.85 -0.9
450,284 + Echvi_0410 0.86 -1.2
450,292 + Echvi_0410 0.87 +0.5
450,319 - -1.1
450,347 - -1.2
450,360 + -1.1
450,361 - -0.8
450,370 + +0.2
450,372 + +1.4
450,372 + +1.1
450,372 + +0.1
450,373 - -0.9
450,373 - -1.1
450,470 + -0.5
450,470 + -0.4
450,472 + -0.4
450,473 - +0.2

Or see this region's nucleotide sequence